A solid-liquid two phase partitioning system (TPPS) is a new technology platform for destroying toxic organic compounds. TPPS have traditionally been operated by using an immiscible organic phase which partitions organic compounds into the aqueous phase. TPPS using an immiscible organic phase suffers from several limitations such as the organic phase could be biodegradable and hence only certain compatible microbial strains could be used. This therefore, eliminates the desired use of mixed microbial populations for efficient degradation. A solid-liquid two phase partitioning system, in which solid polymeric beads replace liquid organic phase, appears to have benefits over the traditional liquid-liquid partitioning systems. The choice of suitable polymeric material should have similar absorption properties as the liquid organic solvent but have the added benefit of being able to be used with mixed microbial population. In this study, poly (ethylene-co-vinyl acetate), brand name ELVAX 40W, was selected as the test polymer in an effort to lower the concentrations of selected analytes; phenol, 4- nitrophenol and o-cresol in aqueous solutions. Studies were performed to determine the degree of partitioning using HPLC and UV-VIS. Kinetic studies were also performed and illustrated a first order dependence on the absorption of the phenols tested. Activation energies were also determined for each analyte. Rate constants were on the order of 10-4 min-1. Activation energy ranged from 19-46 kJ/mol. Regeneration tests showed that a release of analyte from the polymer is possible when the beads are placed in water. Therefore the ability to reuse the polymer is possible and therefore cost efficient. The polymer was observed to lower high concentrations up to 2000 ppm suggesting its potential use to treat the high concentrations of toxic organic compounds.

Abstract The aim of this PhD-study was to address some of the overlapping bottlenecks in protein engineering and metagenomics by developing or applying new tools which are useful for both disciplines. Two enzymes were studied as an example: Triosephosphate Isomerase (TIM) and Uridine Phosphorylase (UP). TIM is an important enzyme of the glycolysis pathway and has been investigated via means of protein engineering, while UP is a key enzyme in the pyrimidine-salvage pathway. In this thesis TIM was used to address protein engineering aspects, while UP was used in regards to some metagenomic and bioinformatic aspects. The aspects of a structural driven rational design approach and its implications for further engineering of monomeric TIM variants are discussed. Process development based on a new technology, EnBase®, addresses the relative instability of new variants, compared to its ancestors, for further studies. EnBase® is then applied for the production of 15N isotope labeling of a monomeric TIM variant, A-TIM. Systematical function- and engineering studies on dimeric TIM and monomeric TIM in regards to the hinges of the catalytic loop-6 were conducted to investigate enzyme activity and stability. Both the A178L and P168A were proposed to induce loop-6 closure, a wanted feature for A-TIM variants. The P168A mutants are hardly active, but gave great insight into the catalytic machinery, while the A178L mutants did induce partial loop-6 closure, however in addition, monomeric A178L was destabilized. Homology driven genome mining and subsequent isolation- high throughput (HTP) overexpression of a thermostable UP from the Archaea Aeopyrum pernix was carried out as an example for the production of recombinant proteins. In addition an alternative kinetic method to study the kinetics of UP by means of NMR directly from cell lysate is discussed. The combination of expression libraries and EnBase® in a HTP manner may relieve up the gene-to-product bottleneck. The structural aspects of A. pernix UP are explored by means of simple bioinformatic tools in the last section of this thesis. A thermostable, truncated version of UP was created and its use for protein engineering in the future is explored. The long N-terminal and C-terminal ends of A. pernix UP seem to be involved in stabilizing the dimeric and hexameric structures of UP. However, deletion of the N-terminal end of A. pernix UP yielded a thermostable protein. Overall, the finding in regards to process optimization and HTP expression and optimization and the underlying methods used in the TIM studies and the UP studies are interchangeable.

The glyoxalase system, which has been known since 1913, is widely distributed in nature. The system consists of two enzymes, glyoxalase I and glyoxalase II. Methylglyoxal is very unstable and undergoes oxidation and polymerization reactions. One of the purposes of this study was to find a simple, convenient and reproducible method of methylglyoxal preparation. Another objective was the purification of both glyoxalase enzymes employing affinity chromatography as a major step. The purified enzymes were to be characterized by chemical, physical and kinetic properties as an approach to the understanding of the biological function of the system.

No description available.

Interest in recovery of carboxylic acids from their aqueous solutions and production media has been growing with the improvements in the production techniques. Reactive extraction is proposed as a promising method to achieve high distribution coefficients with good selectivity. In the present study, equilibrium and kinetic studies, needed for the design of a recovery unit were carried out. Reactive extraction of pyruvic, acetic and lactic acids from their single and mixed acid solutions were carried out with tertiary amines, Alamine 336 and trioctylamine, dissolved in diluents, 1-octanol and oleyl alcohol. The kinetic parameters such as reaction order and rate constant were calculated by using the aqueous solution of pyruvic acid with 1-octanol solution of trioctylamine. The distribution coefficient of pyruvic acid was obtained as 0.30 and 0.07 with 1-octanol and oleyl alcohol respectively. The trend did not change after the addition of the extractants to the diluents. As expected, the more polar diluent extracted more acid than the less polar one. The extractant was observed to be the limiting reagent of the reversible complexation reaction in the organic phase. It was seen that loading ratio was not affected by the concentration of the extractant in the organic phase but increased with the equilibrium concentration of the acid in the aqueous phase. The results showed that mainly (1-1) acid-amine reaction occurred in the organic phase. Because tertiary amines can react with only undissociated acids, the increase in the initial pH of the aqueous phase caused a decrease in the distribution coefficients of the carboxylic acids studied. The effect of the concentration of the organic phase disappeared when the initial pH of the aqueous phase was 4.0 and a distribution coefficient value of 0.1 was achieved for all concentration levels of organic phase. Similar results were obtained for acetic and lactic acids and this behavior was used to propose a selective recovery of the acids from their mixed acid solutions. The presence of acetic acid prevented the extraction of pyruvic acid. The increase in the concentration of the extractant in the organic phase caused an increase in the distribution coefficient of pyruvic acid. During the extraction process, lactic acid could not be recovered from ternary acid solutions because of its high hydrophilicity. The results of reactive extraction of lactic and pyruvic acids from their binary acid solutions showed that at higher concentration of lactic acid, the distribution of pyruvic acid was negatively affected. On the other hand, the presence of lactic acid at a low concentration level did not affect the distribution of pyruvic acid. It was found that the reaction between pyruvic acid and trioctylamine in 1-octanol was first order with respect to the reactants with a second order rate constant of 0.94 L mol-1 s-1. The enhancement factor of the system was obtained as 25.

Hialuronidases são responsáveis pela hidrólise de hialuronan, o principal componente da matriz intersticial. Estas enzimas são ubíquas nas peçonhas de serpentes, contudo suas concentrações e características podem variar entre as espécies. Embora estudos indiquem a presença de atividade hialuronidásica na peçonha de Crotalus durissus terrificus e a hialuronidase apresente importante papel no envenenamento local e sistêmico, a enzima ainda não havia sido estudada. Os objetivos deste trabalho focaram o isolamento e a caracterização funcional e estrutural da hialuronidase (CdtHya1) presente na peçonha de serpente Crotalus durissus terrificus. CdtHya1 foi purificada por cromatografia de troca iônica seguida de filtração molecular e interação hidrofóbica (recuperação proteica = 0,23%), consistindo no primeiro estudo de isolamento e caracterização de uma hialuronidase crotálica. Os 44 primeiros aminoácidos do seu N-terminal foram determinados por degradação de Edman e mostraram compartilhar um elevado grau de identidade sequencial com outras hialuronidases depositadas em bancos de dados. CdtHya1 é uma glicoproteína e apresentou atividade máxima a 37°C, pH 5,5 e na presença de NaCl 0,2 mol/L. Seu monômero de 64,5 kDa foi estimado por SDS-PAGE sob condições redutoras. A atividade específica da peçonha solúvel foi 145 unidades turbidimétricas reduzidas por miligrama (UTR/mg), contra 5.066 UTR/mg para CdtHya1. A enzima apresentou Kcat de 3.781,0 min-1 sobre hialuronan e em torno de 400 min-1 sobre os sulfatos de condroitina A, B e C, indicando maior atividade sobre hialuronan. Cátions divalentes (Ca2+ e Mg2+) e NaCl 1 mol/L reduzem significativamente a atividade enzimática. A enzima pura (32 UTR/40 ?L) diminuiu o edema provocado pela injeção subplantar de tampão, crotoxina ou fosfolipase A2 (PLA2), aumentando a difusão destes pelos tecidos dos camundongos. CdtHya1 potencializou a ação da crotoxina, como evidenciado pela morte de camundongos até o final do ensaio de edema de pata. A enzima nativa pura foi submetida a ensaios cristalográficos preliminares onde foram obtidos os primeiros cristais, constituindo assim um passo importante para a determinação da primeira estrutura tridimensional de hialuronidase de peçonha de serpente. Este estudo relata o procedimento de purificação da CdtHya1, a primeira hialuronidase isolada de peçonhas crotálicas com alta atividade antiedematogênica. / Hyaluronidases are responsible for hyaluronan hydrolysis, the major component of the interstitial matrix. These enzymes are ubiquitous in snake venoms, however their concentrations and characteristics may vary between species. Although studies indicate the presence of hyaluronidase activity in the Crotalus durissus terrificus venom and hyaluronidase presents important role in local and systemic envenoming, the enzyme has not been studied yet. The objectives of this study focused on the isolation and functional and structural characterization of hyaluronidase (CdtHya1) presents in Crotalus durissus terrificus snake venom. CdtHya1 was purified by ion exchange chromatography followed by molecular filtration and hydrophobic interaction (protein recovery = 0.23%), consisting in the first study on the isolation and characterization of a crotalic hyaluronidase. Its first 44 N-terminal amino acids were determined by Edman degradation and showed to share a high level of sequence identity against other hyaluronidases deposited in data banks. CdtHya1 is a glycoprotein and it showed maximum activity at 37 °C, pH 5.5 and in the presence of 0.2 mol/L NaCl. Its monomer of 64.5 kDa was estimated by SDS-PAGE under reducing conditions. The soluble venom specific activity was 145 turbidity reducing units per milligram (TRU/mg), against 5,066 TRU/mg for CdtHya1. The enzyme showed Kcat of 3,781.0 min-1 on hyaluronan and about 400 min-1 on chondroitin sulphates A, B or C, indicating higher activity on hyaluronan. Divalent cations (Ca2+ and Mg2+) and 1 mol/L NaCl significantly reduce the enzyme activity.The pure enzyme (32 TRU/40 ?L) decreased the edema caused by subplantar injections of buffer, crotoxin or phospholipase A2 (PLA2), increasing their diffusion through mice tissues. CdtHya1 potentiated crotoxin action, as evidenced by mice death by the end of the paw edema assay. The pure native enzyme was subjected to preliminary crystallographic studies where the first crystals were obtained, thus providing an important step in determining the first three-dimensional structure of hyaluronidase snake venom. This study reports the purification procedure of CdtHya1, the first hyaluronidase isolated from crotalic venoms with high antiedematogenic activity.

Hialuronidases são responsáveis pela hidrólise de hialuronan, o principal componente da matriz intersticial. Estas enzimas são ubíquas nas peçonhas de serpentes, contudo suas concentrações e características podem variar entre as espécies. Embora estudos indiquem a presença de atividade hialuronidásica na peçonha de Crotalus durissus terrificus e a hialuronidase apresente importante papel no envenenamento local e sistêmico, a enzima ainda não havia sido estudada. Os objetivos deste trabalho focaram o isolamento e a caracterização funcional e estrutural da hialuronidase (CdtHya1) presente na peçonha de serpente Crotalus durissus terrificus. CdtHya1 foi purificada por cromatografia de troca iônica seguida de filtração molecular e interação hidrofóbica (recuperação proteica = 0,23%), consistindo no primeiro estudo de isolamento e caracterização de uma hialuronidase crotálica. Os 44 primeiros aminoácidos do seu N-terminal foram determinados por degradação de Edman e mostraram compartilhar um elevado grau de identidade sequencial com outras hialuronidases depositadas em bancos de dados. CdtHya1 é uma glicoproteína e apresentou atividade máxima a 37°C, pH 5,5 e na presença de NaCl 0,2 mol/L. Seu monômero de 64,5 kDa foi estimado por SDS-PAGE sob condições redutoras. A atividade específica da peçonha solúvel foi 145 unidades turbidimétricas reduzidas por miligrama (UTR/mg), contra 5.066 UTR/mg para CdtHya1. A enzima apresentou Kcat de 3.781,0 min-1 sobre hialuronan e em torno de 400 min-1 sobre os sulfatos de condroitina A, B e C, indicando maior atividade sobre hialuronan. Cátions divalentes (Ca2+ e Mg2+) e NaCl 1 mol/L reduzem significativamente a atividade enzimática. A enzima pura (32 UTR/40 ?L) diminuiu o edema provocado pela injeção subplantar de tampão, crotoxina ou fosfolipase A2 (PLA2), aumentando a difusão destes pelos tecidos dos camundongos. CdtHya1 potencializou a ação da crotoxina, como evidenciado pela morte de camundongos até o final do ensaio de edema de pata. A enzima nativa pura foi submetida a ensaios cristalográficos preliminares onde foram obtidos os primeiros cristais, constituindo assim um passo importante para a determinação da primeira estrutura tridimensional de hialuronidase de peçonha de serpente. Este estudo relata o procedimento de purificação da CdtHya1, a primeira hialuronidase isolada de peçonhas crotálicas com alta atividade antiedematogênica. / Hyaluronidases are responsible for hyaluronan hydrolysis, the major component of the interstitial matrix. These enzymes are ubiquitous in snake venoms, however their concentrations and characteristics may vary between species. Although studies indicate the presence of hyaluronidase activity in the Crotalus durissus terrificus venom and hyaluronidase presents important role in local and systemic envenoming, the enzyme has not been studied yet. The objectives of this study focused on the isolation and functional and structural characterization of hyaluronidase (CdtHya1) presents in Crotalus durissus terrificus snake venom. CdtHya1 was purified by ion exchange chromatography followed by molecular filtration and hydrophobic interaction (protein recovery = 0.23%), consisting in the first study on the isolation and characterization of a crotalic hyaluronidase. Its first 44 N-terminal amino acids were determined by Edman degradation and showed to share a high level of sequence identity against other hyaluronidases deposited in data banks. CdtHya1 is a glycoprotein and it showed maximum activity at 37 °C, pH 5.5 and in the presence of 0.2 mol/L NaCl. Its monomer of 64.5 kDa was estimated by SDS-PAGE under reducing conditions. The soluble venom specific activity was 145 turbidity reducing units per milligram (TRU/mg), against 5,066 TRU/mg for CdtHya1. The enzyme showed Kcat of 3,781.0 min-1 on hyaluronan and about 400 min-1 on chondroitin sulphates A, B or C, indicating higher activity on hyaluronan. Divalent cations (Ca2+ and Mg2+) and 1 mol/L NaCl significantly reduce the enzyme activity.The pure enzyme (32 TRU/40 ?L) decreased the edema caused by subplantar injections of buffer, crotoxin or phospholipase A2 (PLA2), increasing their diffusion through mice tissues. CdtHya1 potentiated crotoxin action, as evidenced by mice death by the end of the paw edema assay. The pure native enzyme was subjected to preliminary crystallographic studies where the first crystals were obtained, thus providing an important step in determining the first three-dimensional structure of hyaluronidase snake venom. This study reports the purification procedure of CdtHya1, the first hyaluronidase isolated from crotalic venoms with high antiedematogenic activity.

Les ribozymes sont des ARN catalytiques fréquemment exploités pour le développement d’outils biochimiques et d’agents thérapeutiques. Ils sont particulièrement intéressants pour effectuer l’inactivation de gènes, en permettant la dégradation d’ARNm ou d’ARN viraux associés à des maladies. Les ribozymes les plus utilisés en ce moment pour le développement d’agents thérapeutiques sont les ribozymes hammerhead et hairpin, qui permettent la reconnaissance spécifique d’ARN simple brin par la formation de structures secondaires stables. In vivo, la majorité des ARN adoptent des structures secondaires et tertiaires complexes et les régions simples brins sont parfois difficiles d’accès. Il serait intéressant de pouvoir cibler des ARN repliés et un motif d’ARN intéressant à cibler est la tige-boucle d’ARN qui peut être importante dans le repliement global des ARN et pour accomplir des fonctions biologiques. Le ribozyme VS de Neurospora fait la reconnaissance de son substrat replié en tigeboucle de façon spécifique par une interaction kissing-loop, mais il n’a jamais été exploité pour faire la reconnaissance d’un ARN cible très différent de son substrat naturel. Le but des travaux présentés dans cette thèse est de déterminer si le ribozyme VS possède l’adaptabilité nécessaire pour l’ingénierie de ribozymes qui clivent des ARN cibles différents du substrat naturel. Dans le cadre de cette thèse, le ribozyme VS a été modifié pour l’adapter à différents substrats et des études de cinétiques ont été réalisées pour évaluer l’impact de ces modifications sur l’activité de clivage du ribozyme. Dans un premier temps, le ribozyme a été modifié pour faire la reconnaissance et le clivage de substrats possédant différentes longueurs de tiges Ib. Le ribozyme a été adapté avec succès à ces substrats de différentes longueurs de tige Ib, avec une activité qui est similaire à celle du ribozyme avec un substrat sans modification. Dans un deuxième temps, c’est l’interaction kissing-loop I/V du ribozyme qui a été substituée de façon rationnelle, dans le but de savoir si un ribozyme VS mutant peut reconnaitre et cliver un substrat ayant une boucle différente de celle de son substrat naturel. L’interaction kissing-loop I/V a été substituée pour les interactions kissing-loop TAR/TAR* de l’ARN du VIH-1 et L22/L88 de l’ARN 23S de Deinococcus radiodurans. La réaction de iii clivage des ribozymes comportant ces nouvelles interactions kissing-loop est toujours observée, mais avec une activité diminuée. Finalement, la sélection in vitro (SELEX) de ribozymes a été effectuée pour permettre un clivage plus efficace d’un substrat mutant avec une nouvelle boucle. Le SELEX a permis la sélection d’un ribozyme qui clive un substrat avec une boucle terminale mutée pour celle de l’ARN TAR du VIH-1 et cela avec une activité de clivage très efficace. L’ensemble de ces études démontre que le ribozyme VS peut être modifié de diverses façons pour la reconnaissance spécifique de différents substrats, tout en conservant une bonne activité de clivage. Ces résultats montrent le grand potentiel d’ingénierie du ribozyme VS et sont prometteurs pour la poursuite d’études d’ingénierie du ribozyme VS, en vue du clivage d’ARN cibles repliés en tige-boucle complètement différents du substrat naturel du ribozyme VS. / Ribozymes are catalytic RNAs frequently exploited for the development of biochemistry tools and therapeutic agents. They are particularly interesting in gene inactivation strategies for the degradation of mRNA and viral RNA genome. Currently, the most common ribozymes used in the development of therapeutic agents are the hammerhead and hairpin ribozymes, which can specifically recognize and cleave target single-stranded RNAs through the formation of stable secondary structures. In vivo, single-stranded RNAs can be difficult to target because most RNA adopt complex secondary and tertiary structures. It could be worthwhile to target folded RNA motifs, and an interesting target is the stem-loop structure because stem-loops are important for the overall folding of RNA molecules and they can perform important biological functions. The Neurospora VS ribozyme recognizes its stem-loop folded substrate via a specific kissing-loop interaction, but it has never been exploited for the recognition of target RNA very different from its natural substrate. The goal of the work presented in this thesis is to determine whether the VS ribozyme possesses the necessary adaptability for engineering ribozymes that target RNAs different from its natural substrate. For this thesis, the VS ribozyme was adapted for the recognition of different substrates and kinetic studies were performed to evaluate the effect of these modifications on the cleavage activity. In a first study, the VS ribozyme was modified to recognize and cleave substrates with different stem Ib lengths. The VS ribozyme was successfully adapted to theses substrates of different lengths with a cleavage activity similar to the unmodified ribozyme and substrate. In a second study, the I/V kissing-loop interaction was substituted by rational design, in order to establish if the VS ribozyme variants could recognize and cleave a substrate with a different loop than its natural substrate. The I/V kissing-loop interaction was substituted for the HIV-1 TAR/TAR* and the Deinococcus radiodurans RNA large rRNA subunit L22/L88 kissing-loop interactions. The cleavage reaction was observed for the ribozymes with these new interactions, but with reduced activity. Finally, in vitro selection (SELEX) was used to enable more efficient cleavage of a mutant substrate with a new loop. SELEX experiments enabled v the selection of ribozyme variants that cleave a substrate with a terminal loop mutated to that of the HIV-1 TAR RNA with a very efficient cleavage activity. All of the studies presented in this thesis show that the VS ribozyme can be modified in various ways for the specific recognition of different substrates, while maintaining efficient cleavage activity. These results demonstrate the great potential of VS ribozyme engineering and are very promising for further engineering studies of VS-derived ribozymes for the cleavage of stem-loop folded target RNA completely different from its natural VS ribozyme substrate.

L'analyse cinétique d'interactions de protéines offre une multitude d'informations sur les fonctions physiologiques de ces molécules au sein de l'activité cellulaire, et peut donc contribuer à l'amélioration des diagnostics médicaux ainsi qu'à la découverte de nouveaux traitements thérapeutiques. La résonance plasmonique de surface (SPR) est la technique de biodétection optique de référence pour les études cinétiques d'interaction de molécules biologiques. Si la SPR offre une détection en temps réel et sans marquage, elle nécessite en revanche des équipements coûteux et sophistiqués ainsi que du personnel qualifié, limitant ainsi son utilisation au sein de laboratoires de recherche académiques. Dans ces travaux de thèse, nous avons développé une plateforme de biodétection basée sur l'utilisation de nanofentes biofonctionnalisées combinées avec une détection par microscopie à fluorescence. Ce système permet l'observation en temps réel d'interactions protéines-protéines et la détermination des constantes cinétiques associées, avec des temps de réponse optimisés et une excellente efficacité de capture. La fonctionnalité du système a été démontrée par l'étude des cinétiques d'interaction de deux couples modèles de différentes affinités : le couple streptavidine/biotine et le couple IgG de souris/anti-IgG de souris. Une très bonne cohérence entre les constantes cinétiques extraites, celles obtenues par des expériences similaires réalisées en SPR et les valeurs rapportées dans la littérature montre que notre approche pourrait être facilement applicable pour l'étude cinétique d'interactions de protéines avec une sensibilité allant jusqu'au pM, sur une large gamme de constantes de dissociation. De plus, nous avons intégré un générateur de gradient de concentrations microfluidique en amont de nos nanofentes, permettant ainsi des mesures simultanées de cinétiques d'interactions à différentes concentrations d'analyte en une seule expérience. Ce système intégré offre de nombreux avantages, tels qu'une réduction de la consommation des réactifs et des temps d'analyse par rapport aux approches séquentielles classiques. Cette technologie innovante pourrait ainsi être un outil précieux non seulement pour les domaines du biomédical et de la médecine personnalisée mais aussi pour la recherche fondamentale en chimie et biologie. / Kinetic monitoring of protein-protein interactions offers fundamental insights of their cellular functions and is a vital key for the improvement of diagnostic tests as well as the discovery of novel therapeutic drugs. Surface plasmon resonance (SPR) is an established biosensor technology routinely used for kinetic studies of biomolecular interactions. While SPR offers the benefits of real-time and label-free detection, it requires expensive and sophisticated optical apparatus and highly trained personnel, thus limiting the accessibility of standard laboratories. In this PhD project, we have developed an alternative and cost-effective biosensor platform exploiting biofunctionalized nanofluidic slits, or nanoslits, combined with a bench-top fluorescence microscope. Our approach enables the visualization of protein interactions in real-time with the possibility to determine associated kinetic parameters along with optimized response times and enhanced binding efficiency. We have demonstrated the effectiveness of our devices through kinetic studies of two representative protein-receptor pairs with different binding affinities: streptavidin-biotin and mouse IgG/anti-mouse IgG interactions. Good agreement of extracted kinetic parameters between our device, SPR measurements and literature values indicated that this approach could be readily applicable to study kinetics of protein interactions with sensitivity down to 1 pM on a large scale of dissociation constants. In addition, we have incorporated a microfluidic gradient generator to our validated nanoslit device, which has allowed one-shot parallel kinetic measurements to be realized in a single-experiment. This integrated system provides advantages of diminished material consumption and analysis time over the conventional kinetic assays. We believe that this innovative technology will drive future advancements not only in the discipline of biomedical and personalized medicine, but also in basic chemical/biological research.

Le monoxyde de carbone déshydrogénase (CODH) catalyse la réduction réversible du dioxyde de carbone par son site actif. En utilisant une méthode électrochimique appelée voltammétrie de film protéique, nous étudions le mécanisme enzymatique de CODH en immobilisant l'enzyme à une surface d'électrode de graphite où le transfert direct d'électrons est possible. Traditionnellement, pour empêcher la déplétion du substrat à l'électrode, les électrochimistes utilisent des électrodes tournantes (RDE). Cependant, comme la CODH est très active, même la RDE ne peut pas empêcher l'épuisement, ce qui masque les caractéristiques cinétiques importantes de l’enzyme. Nous ne pouvons pas résoudre le problème avec RDE, puisque nous l’utilisons déjà à la vitesse maximum. Par conséquent, nous devons concevoir une nouvelle cellule électrochimique. Pour cela, nous avons utilisé des simulations de dynamique des fluides computationnelles pour explorer diverses géométries afin d'en trouver une appropriée. Nous avons commencé par valider notre méthode numérique avec la solution théorique bien définie de la cellule réelle de RDE. Après la bonne validation, nous avons déterminé les vitesses de transport de masse au sein de plusieurs géométries et à basé sur l'optimisation des paramètres géométriques, nous avons atteint notre conception appropriée. Ce nouveau prototype a une électrode graphite uniformément accessible avec un taux de transport trois fois plus rapide que le RDE à des vitesses de solution acceptables. Nous avons construit, mis en place avec succès le système pour caractériser ses performances de transport, et trouvé un excellent accord entre les résultats numériques et expérimentaux / Carbon monoxide dehydrogenase (CODH) catalyzes the reversible reduction of carbon dioxide by its active site. Thus, CODH participates in the first step of fuel production. Using an electrochemical method called protein film voltammetry, we study the enzymatic mechanism of CODH by immobilizing the enzyme at a graphite electrode surface where direct electron transfer is possible. Traditionally, to prevent depletion of the substrate at the electrode, electrochemists use rotating electrodes (RDE). However, since CODH is very active, even RDE cannot prevent depletion, which masks the important kinetic characteristics of the enzyme and complicates the analysis of the enzymatic response.We cannot solve the problem with RDE, since we already use it at maximum speed. Therefore, we must completely change our approach and design a new electrochemical cell. For this, we used computational fluid dynamics (CFD) simulations to explore various geometries to find a suitable one. We began by validating our numerical method with the well-defined theoretical solution of the real cell of RDE. After good validation, we determined the mass transport velocities within several proposed geometries of the flow cell of hydrodynamic channel and jet electrodes. Based on the optimization of geometric parameters, we have achieved our proper design of jet electrode. This new prototype has a uniformly accessible graphite electrode with a transport rate three times faster than the RDE at acceptable solution speeds. We have successfully built and implemented the system to characterize its transport performance. We found an excellent agreement between the numerical and experimental results