Personality has been reported in a large variety of animal species, but it is not obvious why animals have personality. Variation in physiological traits, such as growth rate, should theoretically affect variation in behaviours and thus can explain why we observe variation in personalities. Growth rate is, theoretically, positively correlated with active personality types. Empirical studies have reported this pattern in different fish species, but there are not yet many studies on endothermic animals. I have therefore scored behaviours of 100 red junglefowl (Gallus gallus) chicks in four personality assays; novel arena, novel object, tonic immobility, and a proactive-reactive test, together with recording variation in growth rate of these individuals. The chicks individual growth rate (% day-1) were calculated and the relationship between personality and growth rate investigated. There was significant difference in growth rate between the sexes, where males grew faster than females, detected already at one week of age. However, no significant correlations between behavioural traits and growth rate were observed, indicating that personality seem to be independent of growth rate. Further studies should therefore investigate the generality of this finding, and alternative underlying mechanisms for variation in personality should be explored.

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Consistent between-individual differences in behaviour (termed “animal personality”) may be driven by adaptive differences in behavioural and physiological life-history traits. The Pace of Life Syndrome (POLS) hypothesis predicts a suit of correlations between those life-history traits along a fast-slow continuum. Therefore, according to the POLS, individuals that are fast-paced would be bolder, more explorative, show high growth-rates, lower immunity and a higher metabolic rate. A mechanistic link between such traits could also explain variation in cognitive traits, where bold individuals are faster at a given task but pay less attention to external cues and therefore make decisions less accurately. Here, I tested the POLS hypothesis focusing on between and within-individual variance in boldness, metabolic rate (MR), cognitive performance (as decision-making performance) and exploration in the hermit crab Pagurus bernhardus. In addition, I also investigated the potential role of anthropogenic disturbances (constant light exposure) as a driver of between and within-individual variation in boldness. Hermit crabs demonstrated consistent between-individual differences in boldness and exploration, providing evidence for the presence of animal personality. However, variation between individuals in boldness, exploration and cognitive performance were not underpinned by variation in MR. Although there were no between-individual correlations among MR and behaviour, MR did co-vary with within-individual variance in boldness. My results indicate that less predictable hermit crabs, on average, have a higher MR during startle responses compared with those that are relatively consistent in their behaviour. Boldness was positively correlated with exploration rate, indicating that more explorative were also bolder, as well as cognitive performance, as bold individuals had a better performance than shy. Finally, constant light exposure is likely to modify hermit crab personality and physiology. Hermit crabs kept under a constant light regime were less bold and had a higher metabolic rate, than when kept under standard light and dark regime, indicating possible effects light pollution in this species. These results only partially support the POLS hypothesis.

The persistence of a species in the face of environmental change is a function of the extent to which populations respond differently to changes in their environment and the spatial correspondence between the scale of disturbance and the scale of adaptation. The pattern by which a population, or genotype, expresses a range of phenotypes across an environmental gradient is called a norm of reaction. The level of phenotypic plasticity displayed within a population (i.e. the slope of the reaction norm) reflects the short-term response of a population to environmental change while variation in reaction norm slopes among populations reflects the spatial scale of variation in these responses. Using a reaction norm framework, I examined the spatial scale of genetic variation in plasticity for life-history traits in Atlantic cod (Gadus morhua), a marine fish of global biological and socioeconomic importance. Through common-garden experiments, I found evidence of both adaptive and non-adaptive plasticity for larval growth rate and survival in two cod populations that experience contrasting thermal environments in nature. A comparison of these reaction norms with those of four cod populations studied previously revealed significant genetic divergence in adaptive traits at a smaller spatial scale than has previously been shown for a marine fish with no apparent physical barriers to gene flow (<250 km). This fine-scale genetic structure is likely the result of populations being locally adapted to seasonal changes in temperature during the larval stage caused by differences in spawning times and may be maintained by behavioural barriers to gene flow. Implications of variation in life-history trait plasticity to fisheries management in the face of predicted changes in climate are discussed.

The song thrush (Turdus philomelos) was introduced to New Zealand from Britain during the mid 19th century and has become one of the most common terrestrial bird species in New Zealand. In this study, I surveyed a range of life-history traits in New Zealand song thrushes for comparison with traits of British thrushes. Clutch size, egg size and nest size have decreased, while the nestling period is shorter and the incubation period longer. This combination of changes suggests birds are investing less energy into each reproductive bout. Birds also appear unable to raise large broods, as nestling starvation is common in New Zealand, which suggests that food is limiting. I experimentally tested the ability of song thrushes to incubate enlarged clutches and broods, but productivity was not higher for enlarged broods and natural 3- and 4-egg clutches produced similar numbers of fledglings. Thus reduced clutch size may be an adaptation to the local environment. Differences in female incubation behaviour, with 3- and 4-egg clutches receiving higher levels of incubation and more visits per hour than 5-egg clutches, also suggest New Zealand thrushes have difficulty coping with clutches as large as those in Britain. The decrease in clutch size between New Zealand and Britain is in the direction and magnitude expected based on the change in latitude, which supports the hypothesis that factors affecting foraging time and food availability, such as daylength, temperature and rainfall, may be selecting for smaller clutches. Egg size was also found to have decreased in New Zealand, though this may be the result of smaller adult size. Hatchling mass was related to egg volume, but I found no effect of egg volume or clutch size on hatching success. However, nests containing more pointed eggs (i.e., abnormally-shaped eggs), had lower survival and hatching/fledgling success. Data from the national nest record database and my study both suggest that differences in song thrush productivity are the result of differential survival of nestlings. Nestling mortality due to starvation was common at Kowhai Bush, but rare in Britain, so either adult condition or food availability may be lowering reproductive success in New Zealand. High rates of nest failure (>65%) could also affect clutch size, but the strong directional selection imposed by food limitation during the nestling period suggests that increases in food supply would result in increased reproductive success even with the same levels of nest failure. When comparing clutch size throughout New Zealand, I found a significant, positive relationship with rainfall, which further suggests that food limitation may be the main factor driving changes in life-history traits of song thrushes in New Zealand.

Coral reefs ecosystems are deteriorating and facing dramatic changes. These changes suggest a shift in dominance from corals to other benthic organisms. Particularly in the Caribbean Sea, with corals dying, sponges have become the leading habitat-forming benthic animals. However, little is known about what life-history traits allow organisms to proliferate in a marine system that is undergoing change. Thus, the objective of this dissertation was to try to understand the current increase of encrusting excavating sponges on deteriorating Caribbean coral reefs through the study of reproduction, recruitment and dispersal potential of the widely distributed and currently expanding species, Cliona delitrix. Different methodological approaches were used, such as histology, electron microscopy, quantification of sponges in the field, genetics, and mathematical modeling. Results are presented in four different chapters. It was found that Cliona delitrix has an extended reproductive cycle in Florida, USA, from April - May to around November - December depending on a >25°C sea-water temperature threshold. C. delitrix gametogenesis is asynchronous and it has multiple spawning events. C. delitrix is recruiting abundantly on Caribbean coral reefs, preferentially on recent coral mortality than on old coral mortality. The increase in C. delitrix and other excavating sponges can be explained by the repeated spawning and by the coincidence in time and space of larval production with the availability of new dead coral, which tend to overlap during the warmest months of the year. Eggs or larvae of C. delitrix appear to survive enough to be transported by currents over larger distances. It was found that dispersal ranges for Cliona delitrix may reach as far as ~315 km in the Florida reef track, and over ~971 km in the South Caribbean Sea, between Belize and Panama. Thus, reproduction, dispersal, and recruitment patterns of C. delitrix along with oceanographic currents, and eddies that form at different periods of time, are sustaining the spread of this sponge on coral reefs. According to mathematical models carried out, C. delitrix increase on reefs fluctuates depending of coral mortality events and available space on old dead coral (colonized by algae and other invertebrates). However, under temperature anomalies, these sponges will 2 tend to increase and take over the reef system only if heat stress and coral mortality is moderate. Under massive mortality events both corals and sponges will tend to decline, although sponges at a slower rate than corals. In general, coral excavating sponges have been favored by coral mortality, especially during past few decades. However as bioeroders, their success is also limited by the success of calcifying corals. In a reef management context and based on this dissertation’s findings, it is suggested that excavating sponges, and especially Cliona delitrix, should be more formally included in reef monitoring programs. Their increase can be used to track coral mortality events on reefs (past and future), and also can be used as another major bioindicator of health on coral reefs.

L’écosystème pélagique du Golfe du Lion a subi un changement très marqué de la dynamique de population des poissons petits pélagiques depuis 2008. L'anchois (Engraulis encrasicolus) et la sardine (Sardina pilchardus), exploités économiquement, sont devenus plus petits et plus maigres tandis que le sprat (Sprattus sprattus), non exploité car de faible valeur commerciale a fortement augmenté en abondance et en biomasse. Cette thèse analyse les changements observés en se basant sur la condition corporelle, i.e. les réserves énergétiques des individus, et les causes et conséquences de ses variations. La condition corporelle était optimale, en 2005 et 2006 pour l’anchois et la sardine, puis s’est dégradée depuis 2008 pour rester à de faibles niveaux depuis 2010. Les principaux paramètres expliquant les changements de condition corporelle sont la concentration zooplanctonique pour les deux espèces ainsi que la température de surface pour la sardine et le débit du Rhône pour l’anchois. Depuis 2008, les sardines les plus âgées semblent être les plus touchées par cette chute de condition. Le chapitre suivant a permis d'identifier des changements temporels des niches isotopiques qui sont aujourd’hui partagées par l’anchois et la sardine avec le sprat alors qu’elles ne l’étaient pas en 2004-2005. En plus de cette compétition potentielle, les proies aujourd’hui consommées sont de plus petite taille et probablement moins énergétiques. Ces deux résultats peuvent expliquer la plus faible condition actuellement observée par un apport nutritif actuellement réduit. Malgré les plus faibles réserves disponibles, les deux espèces investissent toujours autant dans la reproduction, voire même plus pour la sardine, comme suggéré par plusieurs proxys que sont l’indice gonado-somatique ou la durée de la période de reproduction. L’investissement énergétique semble donc se faire vers la reproduction au détriment de la survie, ce qui explique la disparition des sardines les plus âgées (celles en âge de se reproduire). Des effets maternels ont aussi été montrés, les plus grands individus pondant plus d’œufs et ceux en meilleure condition produisant des œufs de meilleure qualité. Le stock de sardine produit ainsi moins d’œufs depuis 2010 alors que l’anchois en produit plus, ce qui pourrait venir de l’augmentation du nombre d’individus et de l’abaissement de la taille et de l’âge à maturité. Dans une étude à large échelle, nous avons mis en évidence que la baisse de la condition est également perceptible dans d’autres zones de Méditerranée. Néanmoins, les variations de condition ne sont pas régies de façon synchrone en Méditerranée, pointant l’importance des facteurs locaux dans cette mer quasi-fermée. De plus, les anchois présentent une meilleure condition corporelle dans les zones de convergence des masses d’eaux (e.g. fronts, upwellings locaux) alors que les sardines préfèrent les zones de forte production primaire. Ces différences pourraient être liées aux différences dans le cycle de reproduction et dans le comportement alimentaire. Ces travaux de thèse complètent les précédents travaux faits sur les mécanismes top-down et soulignent ici le rôle que joue la ressource alimentaire (contrôle 'bottom-up') dans les variations de condition corporelle dans le Golfe du Lion et en Méditerranée. L’étude de la condition corporelle a aussi permis de comprendre les raisons de la troncation démographique observée chez la sardine. Malgré cela, il est toujours nécessaire d’estimer si un seuil létal de la condition corporelle existe chez nos espèces et d’améliorer le suivi zooplanctonique pour mieux comprendre le lien entre la productivité planctonique et la dynamique de population des petits pélagiques. Cette thèse permet une avancée notable dans la compréhension de la dynamique de population des petits pélagiques et permettra d’appréhender au mieux les répercussions écologiques et économiques de la baisse générale de leur condition dans toute la Méditerranée. / Multiple changes have been described since 2008 in the Gulf of Lions ecosystem and particularly in small pelagic fish dynamic. In particular, the two main exploited species, i.e. anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus) are now smaller and in poor condition while a third species, the sprat (Sprattus sprattus) strongly increased in terms of biomass and abundance. This PhD thesis investigated these changes through the analysis of small pelagic fish body condition (i.e individual energy stores) variations, its causes and consequences. Anchovy and sardine body condition was optimal in 2005 and 2006 and decreased after 2008 to remain steady at low level since 2010. Moreover, older sardine have particularly displayed poor body condition since 2008. A part of these changes is associated with changes in zooplankton concentration for both species, but also with both sea surface temperature and diatoms for sardine and Rhône outflow for anchovy. Thus, as bottom-up control was highlighted, the following chapter investigated potential changes in diet through isotope and stomach content analyses. Isotopic niche varied temporally and have been overlapping since 2010 for both anchovy and sardine with the sprat, resulting in a potential new trophic competition. Further, preys are also smaller and probably less energetic. Both studies may explain the poorer body condition by a reduced food supply. Although smaller energy stores are available, both species still allocate a large part of their energy to reproduction, as observed through e.g. gonado-somatic indices. This bias in energy allocation towards reproduction might impair survival and explain the disappearance of oldest mature sardine in the Gulf of Lions. Maternal effects were also underlined. Indeed, large individuals spawn more eggs while fatter individual spawn higher quality eggs. The decrease in size and condition has thus led to a lower production of eggs since 2010 for sardines while anchovy managed to maintain if not increase its egg production thanks to the expanding number of individuals and the decline of anchovy size and age at maturity. At a broader scale, we pointed out that fish body condition decreased in other Mediterranean areas such as the Adriatic Sea, the Catalan Sea or the Strait of Sicily. Nonetheless, body condition variations were not synchronous in the Mediterranean Sea, pointing out the importance of local factors in this quasi-enclosed basin. Furthermore, anchovy displays a better body condition in high energetic areas (fronts areas, local upwellings) when sardine prefers areas with high primary productivity. Those differences could be linked to the different reproductive cycles and trophic behaviours. This PhD thesis complements the previous work made on top-down processes and strengthens the bottom-up importance to determine forage fish body condition both in the Gulf of Lions and the Mediterranean Sea. Studying body condition allowed understanding the reasons of the sardine demographic truncation. Indeed, the older the individual the poorer the body condition, preventing them to achieve both reproduction and survival. This PhD thesis reaches new conclusions and improves knowledge on small pelagic fish dynamic in the Gulf of Lions. Although, further work is still necessary to estimate experimentally if a body condition threshold exists and to improve zooplanktonic monitoring to better understand the link between planktonic productivity and small pelagic fish dynamic. This will help to investigate deeply the ecological and economical consequences of small pelagic fish decreasing body condition in the Mediterranean.

In the seed beetle Callosobruchus maculatus, the female is the larger sex and the male is the smaller sex. However, males that are almost as large as females can also occur, which is due to a specific Y chromosome haplotype. This Y chromosome polymorphism is not expected since the Y chromosome does not recombine and has lost genetic variation as a consequence. Nevertheless, the Y chromosome manages to maintain this polymorphism. Thus, the questions asked are how this occurs and how the large male Y haplotype persists to exist since previous studies have shown how small males have the higher fitness. In this study, large males were from line SL3b Y and small males were from line SL1b Y. To answer the questions, two important measures of fitness were conducted, mating- and lifetime reproductive success, as well as lifetime-history traits of the SL1b Y and SL3b Y males. Males from line SL3b Y turned out to have a faster growth rate and a shorter development time compared to the SL1b Y males. Both the SL3b Y males with a shorter development time and the SL1b Y males with a longer development time had larger body sizes. Large males also showed to have heavier ejaculate weight and produced more offspring compared to the other male Y haplotype. However, neither of the males had higher pre-mating success. In conclusion, the two male Y haplotypes must coexist in nature since their traits are beneficial in different environments and circumstances.

Avian life histories range along the axis from slow to fast, with slow life histories being characterized by greater investments in future reproduction, and fast by greater investments in current reproduction. The concept of pace-of-life syndromes refers to the coevolution of life strategies and related physiological, immunological and behavioral traits. Avian species from tropical areas are characterised by slower life histories (longer parental care, later maturation, smaller clutches, reduced metabolic rate) when compared to temperate zone species. Within this latitudinal gradient, investments in the total amount (weight) of body feathers have also been shown to be reduced in tropical birds. It remains unclear, however, whether feather growth itself follows this latitudinal pattern, and is slower in tropical species. Tropical birds have lower basal levels of corticosterone and testosterone, however available studies are based mainly on analyzes of hormone concentrations from plasma. The first aim of this diploma thesis was to evaluate differences between tropical (Cameroon) and temperate zone (the Czech Republic) passerine species in investments in tail feather growth by using methods of comparative ptilochronology. The second aim of the diploma thesis was to analyze concentrations of steroid...