After termination, cover crop residue can suppress weeds by reducing sunlight, decreasing soil temperature, and providing a physical barrier. Experiments were implemented to monitor horseweed suppression from different cover crops as well as two fall-applied residual herbicide treatments. Results suggest that cover crops, other than forage radish in monoculture, can suppress horseweed more consistently than flumioxazin + paraquat or metribuzin + chlorimuron-ethyl. Cover crop biomass is positively correlated to weed suppression. Subsequent experiments were designed to determine the amount of weed suppression from different cover crop treatments and if carbon to nitrogen (C:N) ratios or lignin content are also correlated to weed suppression or cover crop residue thickness. Results indicate that cereal rye alone and mixtures containing cereal rye produced the most biomass and suppressed weeds more than hairy vetch, crimson clover, and forage radish alone. Analyses indicate that lignin, as well as biomass, is an important indicator of weed suppression. While cover crops provide many benefits, integrating cover crops into production can be difficult. Hairy vetch, a legume cover crop, can become a weed in subsequent seasons. Multiple experiments were implemented to determine germination phenology and viability of two hairy vetch cultivars, Groff and Purple Bounty, and to determine when viable seed are produced. Almost all germination occurred in the initial cover crop growing season for both cultivars. Both cultivars had <1% of viable seed at the termination of the experiment. These results indicate that seed dormancy is not the primary cause of weediness. / Master of Science in Life Sciences / Cover crops are grown in the time between cash crop production, such as corn or soybeans. These crops are not grown for profit but mainly for environmental benefits such as reducing erosion and increasing soil organic matter and water infiltration. Another benefit of cover crops is the ability to suppress weeds. Cover crops can suppress weeds while they are actively growing by competing for resources such as light, water, and nutrients. After the cover crops have been terminated, or killed prior to cash crop planting, the residue can form a mulch layer on the soil surface which acts to suppress weeds by reducing the amount of sunlight that reaches the soil surface, decreasing soil temperature, and providing a physical barrier to slow weed growth. Horseweed is a problematic weed for growers to control and the number of herbicide options that growers can utilize is decreasing due to herbicide resistance. This weed has small seed and multiple germination periods, which cover crops have the ability to target. Experiments were designed to compare horseweed suppression from different cover crop monocultures and mixtures with suppression obtained from two fall-applied residual herbicide programs. The cover crop species used were cereal rye, crimson clover, hairy vetch, and forage radish. The cover crops were planted and herbicides applied in the fall. Data collected included horseweed counts, visible suppression ratings, and horseweed biomass taken in the following corn or soybean growing season. All cover crop treatments suppressed horseweed as compared to the nontreated check, with the exception of forage radish alone. The fall-applied herbicides did not perform as well as the cover crops. Results indicate that integration of cover crops is a viable tactic for horseweed management. As cover crop biomass increases the level of weed suppression also increases. Experiments were implemented to measure the level of weed suppression and to determine if the composition of the cover crop residue is important in weed suppression. Monocultures and mixtures of the same four cover crop species listed above were grown prior to corn and soybean production. At cover crop termination, samples were taken to determine biomass, carbon to nitrogen (C:N) ratio, and lignin content. Cereal rye and mixtures containing cereal rye provided > 55% weed suppression 6 weeks after cover crop termination. Analyses also indicated that lignin, as well as biomass, is an important predictor of weed suppression after termination. While cover crops have many benefits, there can be some complications. Hairy vetch is a legume cover crop species that has the ability to suppress weeds but can also become weedy in subsequent crops. Experiments were performed to track germination and seed viability of two hairy vetch cultivars, Groff and Purple Bounty as well as determine when seeds are added to the soil seedbank. Over the course of the experiment, Groff had greater germination than Purple Bounty by 30% in the initial germination periods. Both cultivars had <1% of seed still viable at the end of the experiment. Also, both cultivars produce viable seed in mid-June. The results from these experiments indicate that seed dormancy is not the primary cause of weediness in hairy vetch and that if proper termination occurs prior to mid-June, seeds will not be added to the soil seedbank.

京都大学 / 新制・課程博士 / 博士(エネルギー科学) / 甲第24922号 / エネ博第464号 / 新制||エネ||87(附属図書館) / 京都大学大学院エネルギー科学研究科エネルギー社会・環境科学専攻 / (主査)教授 河本 晴雄, 教授 亀田 貴之, 准教授 南 英治 / 学位規則第4条第1項該当 / Doctor of Energy Science / Kyoto University / DFAM

京都大学 / 新制・課程博士 / 博士(エネルギー科学) / 甲第25397号 / エネ博第476号 / 新制||エネ||89(附属図書館) / 京都大学大学院エネルギー科学研究科エネルギー基礎科学専攻 / (主査)教授 片平 正人, 教授 森井 孝, 教授 河本 晴雄 / 学位規則第4条第1項該当 / Doctor of Energy Science / Kyoto University / DFAM

Development of biomass feedstocks with desirable traits for cost-effective conversion is one of the main focus areas in biofuels research. As suggested by techno-economic analyses, the success of a lignocellulose-based biorefinery largely relies on the utilization of lignin to generate value-added products, i.e. fuels and chemicals. The fate of lignin and its structural/compositional changes during pretreatment have received increasing attention; however, the effect of genetic modification on the fractionation, depolymerization and catalytic upgrading of lignin from genetically engineered plants is not well understood. This study aims to fractionate and characterize the lignin streams from a wild-type and two genetically engineered switchgrass (Panicum virgatum) species (low lignin content with high S/G ratio and high lignin content) using three different pretreatment methods, i.e. dilute sulfuric acid, ammonia hydroxide, and aqueous ionic liquid (cholinium lysinate). The structural and compositional features and impact of lignin modification on lignin-carbohydrate complex characteristics and the deconstruction of cell-wall compounds were investigated. Moreover, a potential way to upgrade low molecular weight lignin to lipids by Rhodococcus opacus was evaluated. Results from this study provide a better understanding of how lignin engineering of switchgrass influences lignin fractionation and upgrading during conversion processes based on different pretreatment technologies.

The first part of this thesis describes my research towards the valorisation of lignin. Due to environmental and political pressures, there has been a drive to start the transition from a fossil fuel based economy to a renewable based one. This will require the development of novel routes to renewable chemicals, one source of which may be the biopolymer lignin. Through the synthesis of advanced lignin model compounds, the chemistry of real lignin is explored. This work culminates in the development of a novel method for the depolymerisation of real lignin to simple mixtures of aromatic chemicals that could be useful building blocks for the chemical industry. One of the key steps in this process is the oxidation of the β-O-4 linkages in lignin using catalytic amounts of DDQ and molecular oxygen as the terminal oxidant. The second part of this thesis details the first synthesis of melohenine B and O-ethyl-14-epimelohenine B, two medium sized ring containing natural products. The key step in the synthesis of these natural products was the photo-sensitised oxidative cleavage of an indolic substrate by molecular oxygen. Additionally, the use of residual dipolar coupling (RDC) analysis for the conformational analysis of these molecules in solution has been explored. Finally, the absolute configurational assignment of the natural products was established and their biological activities investigated.

Técnicas analíticas empregadas para a quantificação do teor de lignina em plantas forrageiras, atualmente em uso, são questionáveis quanto às suas acurácias. O método lignina detergente ácido (LDA), que é um dos métodos mais utilizado em Ciência Animal e Agronomia, apresenta algumas falhas, particularmente devido à parcial solubilização da lignina durante a preparação da fibra em detergente ácido (FDA). A lignina Klason (LK), outro método muito usado, apresenta o inconveniente de mensurar a proteína da parede celular como sendo lignina. Em ambos os procedimentos recomenda-se também mensurar cinzas nos resíduos de lignina. A quantificação da concentração de lignina pelo método espectrofotométrico lignina brometo de acetila (LBA) vem ganhando interesse de pesquisadores no Brasil e no exterior. Nesta metodologia, a lignina da planta contida na preparação parede celular (PC) é solubilizada numa solução a 25% de brometo de acetila em ácido acético e a absorbância mensurada é com luz UV a 280 nm. O valor da absorbância é inserido numa equação de regressão e a concentração de lignina é obtida. Para que esta técnica analítica seja mais aceita pelos pesquisadores, ela deve ser, obviamente, convincente e atrativa. O presente trabalho analisou alguns parâmetros relacionados à LBA em 7 gramíneas e 6 leguminosas, em dois estádios de maturidade. Dentre as diferentes temperaturas de pré-secagem, os resultados indicaram que os procedimentos de 55&deg;C com ventilação e liofilização podem ser utilizados com a mesma eficácia. As temperaturas de 55&deg;C sem ventilação e 80&deg;C sem ventilação não são recomendadas, pois aumentaram os valores de FDA e LDA, possivelmente devido ao surgimento de artefatos de técnica como os compostos de Maillard. No método LBA os valores menores das amostras de leguminosas chamaram a atenção e colocaram em questão se a lignina destas plantas seria menos solúvel no reagente brometo de acetila. Dentre algumas alterações na metodologia da técnica LBA, a utilização do moinho de bolas (para diminuir o tamanho particular) nas amostras de PC não mostrou efeito; a hipótese era melhorar a solubilização da lignina usando partículas menores. O uso de um ultrasonicador, que aumenta a vibração das moléculas e assim, facilitaria a solubilização da lignina no reagente brometo de acetila, melhorou a solubilização da lignina em cerca de 10%, tanto nas gramíneas como nas leguminosas. Foi acoplado um ensaio biológico como referência, a degradabilidade in vitro da matéria seca (DIVMS); e como a lignina está intimamente associada à estrutura fibrosa da parede celular, também foi feito um ensaio de degradabilidade in vitro da fibra em detergente neutro (DIVFDN). Os resultados confirmaram o efeito da maturidade, reduzindo a degradabilidade nas plantas mais maduras, e que o teor de lignina de leguminosas é realmente inferior ao de gramíneas. Os resultados de degradabilidade apresentaram coeficientes de correlação mais elevados com o método LBA, quando foi empregada a técnica do ultrasom; o método LK mostrou os menores coeficientes. Também testou-se, com sucesso, a utilização da FDN, como preparação fibrosa, ao invés de PC. A razão é simples: enquanto que a FDN é amplamente conhecida, a preparação PC não o é. Inquestionável que esta manobra facilitará substancialmente a divulgação desse método, tornando-a mais aceitável pela comunidade científica / Analytical techniques employed to quantify lignin content in forages, currently in use, are questionable as to their accuracies. The method acid detergent lignin (ADL), which is one of the most used method in Animal Science and Agronomy, has some flaws, due to the partial lignin solubilization during the preparation of acid detergent fiber (ADF). The Klason lignin method (KL), another analytical procedure commonly used, has the drawback of measuring the cell wall protein as lignin. In both procedures also are recommended to measure ash content in the lignin residues. Quantification of lignin concentration by the spectrophotometric acetyl bromide lignin method (ABL) has been gaining interest from researchers in Brazil and abroad. In this methodology, the lignin contained in the plant cell wall preparation (CW) is solubilized in a 25% acetyl bromide in acetic acid solution and the absorbance is measured with UV light at 280 nm. The absorbance value is inserted in a regression equation and the concentration of lignin is obtained. For this analytical technique be better accepted by researchers, it must be, obviously, convincing and attractive. This study analyzed some LBA-related parameters in 7 grasses and 6 legumes in two stages of maturity. Among the different temperatures of pre-drying, the results indicated that the procedures at 55&deg;C with ventilation and lyophilization can be used just as effectively. Temperatures of 55 and 80 both without ventilation are not recommended because they increased ADF and ADL values, possibly due to the emergence of technical artifacts such as the compounds of Maillard. The ABL method yielded lower values for legume samples which called into question if the lignin of these plants is less soluble in the acetyl bromide reagent. Among some changes studied in the ABL technique it was the utilization of ball milling in the PC samples, which showed no effect; the hypothesis was to reduce the particle size and thus improve the solubilization of lignin. The use of an ultrasonicator, which increases the vibration of molecules and possibly allowing better solubilization of lignin in the acetyl bromide reagent improved lignin solubilization by about 10%, both in grasses. As a reference, an in vitro dry matter degradability (IVDMD) was conducted. Because lignin is closely linked to the fibrous structure of the cell wall, an in vitro neutral detergent fiber degradability (IVNDFD) test of. Results confirmed the effect of maturity, reducing degradability as the plants matured, and that concentration of lignin is lower in legumes than in grasses. The degradability results showed higher correlation coefficients with the ABL method when the ultrasonicator was used; the KL method showed the lowest coefficients. We also tested, successfully, the use of NDF as a fiber preparation, instead of crude CW. While NDF is widely known, CW preparation is not. This maneuver will substantially facilitate the dissemination of this method, making it more acceptable to the scientific community

The oxidation of lignin model compounds was studied in conventional solvents in parallel with oxidations in ionic liquid solvents. Catalyst systems were investigated in ionic liquid solvents to determine how reaction rates and the selectivity for benzylic carbon oxidation were affected. Oxidation rates were often lower in ionic liquids than in conventional solvents ‒ as indicated by lower conversion in a standard reaction time ‒ likely due, at least in part, to the higher viscosity of ionic liquids. Mechano chemical treatment of Indulin AT kraft lignin by ball milling with KOH and toluene produced significant carbonyl functionality, among other changes. The chemical reactivity of the lignin was increased, resulting in greater lignin degradation from porphyrin oxidation followed by Baeyer-Villiger oxidation. The mechanochemical treatment produced a level of lignin oxidation that was similar to that produced by porphyrin-catalyzed oxidation. Combining mechanochemical treatment with porphyrin oxidation produced a synergistic positive effect on the depolymerization of lignin, as demonstrated by a significantly higher yield of monomers. The methyl ester of vanillic acid was obtained as the main monomeric product (after methylation), along with a small amount of methyl 5-carbomethoxyvanillate.

Softwood is the predominant form of land plant biomass in the Northern hemisphere, and is among the most recalcitrant biomass resources to bioprocess technologies. The white rot fungus Phanerochaete carnosa has been isolated almost exclusively from softwoods, while most other known white-rot species, including Phanerochaete chrysosporium, were mainly isolated from hardwoods. Accordingly, it is anticipated that P. carnosa encodes a distinct set of enzymes and proteins that promote softwood decomposition. To elucidate the genetic basis of softwood bioconversion by P. carnosa, its genome was sequenced and transcriptomes were evaluated after growth on wood compared to liquid medium. Results indicate that P. carnosa differs from P. chrysosporium in the number and expression levels of genes that encode lignin peroxidase (LiP) and manganese peroxidase (MnP), two enzymes that modify lignin present in wood. P. carnosa has more genes for MnP with higher expression levels than LiP, while the reverse has been observed for P. chrysosporium. The abundances of transcripts predicted to encode lignocellulose-modifying enzymes were then measured over the course of P. carnosa cultivation on four wood species. Profiles were consistent with decay of lignin before carbohydrates. Transcripts encoding MnP were highly abundant, and those encoding MnP and LiP featured significant substrate-dependent response. Since differences in modes of lignin degradation catalyzed by MnP and LiP could affect the ability of each to degrade lignin from different types of wood, their activity on various hardwoods and softwoods were tested. Results suggest that MnP degrades softwood lignin more effectively than hardwood lignin, consistent with high levels of this enzyme in P. carnosa.

This study considered the potential use of lignin as possible renewable fuel and chemical feedstock source. Among the various polymers present in lignocellulosic biomass, the polyaromatic lignin is the one component that is most chemically similar to petroleum. However, it still contains a much larger amount of oxygen compared to crude oil. As such, two strategies were employed in this study: (1) studying the lignin depolymerization in the presence of high temperature and base catalysts; and, (2) employing hydrodeoxygenation as a means to decrease the O/C ratio in lignin-derived model compounds. The base-catalyzed depolymerization (BCD) of organosolv lignin was done in a 500-mL Monel Parr reactor at temperatures ranging from 165°C to 350°C. Complete solubilization of lignin derivatives was possible in the presence of NaOH and KOH, except at 350°C. NMR experiments revealed formation of oxidized groups (carboxylic and hydroxyl groups) as well as alkyl groups. On the other hand, the use of NH4OH showed N incorporation. Identified and quantified DCM-soluble monomeric compounds were at most 6% of the starting material and are mainly phenolic. This study revealed the apparent susceptibility of syringyl units over guaiacyl units in BCD. This could in turn guide the choice of substrate on which base-catalyzed depolymerization could be applied. Syringaldehyde was used as the starting material to study batch hydrodeoxygenation (HDO) using several non-cobalt/molybdenum based catalysts. A 50-ml Parr reactor was used, pressurized by 1000 psig of H2 and heated to 300°C. Nickel based catalysts (nickel phosphide, nickel oxide and nickel phosphate) as well as supported precious metals (Pt and Pd) were tested as HDO catalysts. Of the three O-containing functional groups of syringaldehyde, the aldehydic group was found to be the most susceptible. In the presence of the Al2O3-supported catalysts, the methyl groups liberated were found to be incorporated back into the aromatic ring, forming alkylated compounds. In the last section of this dissertation, hydrothermally synthesized supported Ni on mesoporous silica (MCF) and acid catalysts (HY and H-Al-MCF) were used for probing the effect of bifunctional metal-acid catalysis on phenol hydrodeoxygenation/hydrogenation. Catalyst configurations were varied from the previously studied wet-impregnated Pt/HY catalyst. Based on a hypothesis that coking catalyzed by the acidic zeolite in the wet impregnated Pt/HY catalyst was the main cause of catalyst deactivation and decreased phenol conversion, separately synthesized metal and acid catalyst systems were tested. Complete phenol conversion was sustained for at least three times longer in a continuous flow reactor operated at 200°C and 0.79 MPa of flowing H2. The separation of the metal and acid sites generated a tunable system capable of producing cyclohexanol, cyclohexane or cyclohexene at very high selectivities, even achieving 99% selectivities for cyclohexane.

The blending of lignin as a component in a thermoplastic blend poses a challenge in the form of dispersion and compatibility. Polyesters such as poly(lactic acid) and poly(butylene adipate-co-terephthalate) offer the best opportunity of compatibility in melt blending with lignin due to their ability to form hydrogen bonds. The fractionation of lignin into more homogeneous fractions offers better dispersion and more consistent properties, retaining the toughness of the original polymer in addition to bridging stress transfer between PLA and PBAT. Functionalization of lignin was done by lactic acid grafting. The resulting blend of PLA/PBAT/modified fractionated lignin showed improved interaction between lignin and PLA, but reduced compatibility between lignin and PBAT. This thesis provides a deeper understanding on the effect of lignin heterogeneity, its fractions, and the functionalization of lignin on lignin and bioplastic blends to further the use of a largely produced industrial by-product in high value applications. / Natural Sciences and Engineering Research Council (NSERC) – Lignoworks Biomaterials and Chemicals Strategic Research Network, Canadian Foundation for Innovation (CFI), Ontario Ministry of Agriculture, Food and Rural Affairs (OMAFRA)