Face recognition is a popular research area where there are different approaches studied in the literature. In this thesis, a holistic Principal Component Analysis (PCA) based method, namely Eigenface method is studied in detail and three of the methods based on the Eigenface method are compared. These are the Bayesian PCA where Bayesian classifier is applied after dimension reduction with PCA, the Subspace Linear Discriminant Analysis (LDA) where LDA is applied after PCA and Eigenface where Nearest Mean Classifier applied after PCA. All the three methods are implemented on the Olivetti Research Laboratory (ORL) face database, the Face Recognition Technology (FERET) database and the CNN-TURK Speakers face database. The results are compared with respect to the effects of changes in illumination, pose and aging. Simulation results show that Subspace LDA and Bayesian PCA perform slightly well with respect to PCA under changes in pose / however, even Subspace LDA and Bayesian PCA do not perform well under changes in illumination and aging although they perform better than PCA.

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No. of bitstreams: 1 Dissertação-Larissa M de Almeida.pdf: 5516102 bytes, checksum: e49d2bccd21168f811140c6accd54e8f (MD5) Previous issue date: 2015-04-17 / Não Informada / About half the world's population lives in malaria risk areas. Moreover, given the globalization of travel, these diseases that were once considered exotic and mostly tropical are increasingly found in hospital emergency rooms around the world. And often when it comes to experience in tropical diseases, expert opinion most of the time is not available or not accessible in a timely manner. The task of an accurate and efficient diagnosis of malaria, essential in medical practice, can become complex. And the complexity of this process increases as patients have non-specific symptoms with a large amount of data and inaccurate information involved. In this approach, Uzoka and colleagues (2011a), from clinical information of 30 Nigerian patients with confirmed malaria, used the Analytic Hierarchy Process method (AHP) and Fuzzy methodology to conduct the evaluation of the severity of malaria. The results obtained were compared with the diagnosis of medical experts. This paper develops a new methodology to evaluate the severity of malaria and compare with the techniques used by Uzoka and colleagues (2011a). For this purpose the data set used is the same of that study. The technique used is the Artificial Neural Networks (ANN). Are evaluated three architectures with different numbers of neurons in the hidden layer, two training methodologies (leave-one-out and 10-fold cross-validation) and three stopping criteria, namely: the root mean square error, early stop and regularization. In the first phase, we use the full database. Subsequently, the feature extraction methods are used: in the second stage, the Principal Component Analysis (PCA) and in the third stage, the Linear Discriminant Analysis (LDA). The best result obtained in the three phases, it was with the full database, using the criterion of regularization associated with the leave-one-out method, of 83.3%. And the best result obtained in (Uzoka, Osuji and Obot, 2011) was with the fuzzy network which revealed 80% accuracy / Cerca de metade da população mundial vive em áreas de risco da malária. Além disso, dada a globalização das viagens, essas doenças que antes eram consideradas exóticas e principalmente tropicais são cada vez mais encontradas em salas de emergência de hospitais no mundo todo. E frequentemente quando se trata de experiência em doenças tropicais, a opinião de especialistas na maioria das vezes está indisponível ou não acessível em tempo hábil. A tarefa de chegar a um diagnóstico da malária preciso e eficaz, fundamental na prática médica, pode tornar-se complexa. E a complexidade desse processo aumenta à medida que os pacientes apresentam sintomas não específicos com uma grande quantidade de dados e informação imprecisa envolvida. Nesse sentido, Uzoka e colaboradores (2011a), a partir de informações clínicas de 30 pacientes nigerianos com diagnóstico confirmado de malária, utilizaram a metodologia Analytic Hierarchy Process (AHP) e metodologia Fuzzy para realizar a avaliação da gravidade da malária. Os resultados obtidos foram comparados com o diagnóstico de médicos especialistas. Esta dissertação desenvolve uma nova metodologia para avaliação da gravidade da malária e a compara com as técnicas utilizadas por Uzoka e colaboradores (2011a). Para tal o conjunto de dados utilizados é o mesmo do referido estudo. A técnica utilizada é a de Redes Neurais Artificiais (RNA). São avaliadas três arquiteturas com diferentes números de neurônios na camada escondida, duas metodologias de treinamento (leave-one-out e 10-fold cross-validation) e três critérios de parada, a saber: o erro médio quadrático, parada antecipada e regularização. Na primeira fase, é utilizado o banco de dados completo. Posteriormente, são utilizados os métodos de extração de características: na segunda fase, a Análise dos Componentes Principais (do inglês, Principal Component Analysis - PCA) e na terceira fase, a Análise Discriminante Linear (do inglês, Linear Discriminant Analysis – LDA). O melhor resultado obtido nas três fases, foi com o banco de dados completo, utilizando o critério de regularização, associado ao leave-one-out, de 83.3%. Já o melhor resultado obtido em (Uzoka, Osuji e Obot, 2011) foi com a rede fuzzy onde obteve 80% de acurácia.

The task of automatically recognizing targets in IR imagery has a history of approximately 25 years of research and development. ATR is an application of pattern recognition and scene analysis in the field of defense industry and it is still one of the challenging problems. This thesis may be viewed as an exploratory study of ATR problem with encouraging recognition algorithms implemented in the area. The examined algorithms are among the solutions to the ATR problem, which are reported to have good performance in the literature. Throughout the study, PCA, subspace LDA, ICA, nearest mean classifier, K nearest neighbors classifier, nearest neighbor classifier, LVQ classifier are implemented and their performances are compared in the aspect of recognition rate. According to the simulation results, the system, which uses the ICA as the feature extractor and LVQ as the classifier, has the best performing results. The good performance of this system is due to the higher order statistics of the data and the success of LVQ in modifying the decision boundaries.

A qualidade microbiológica de medicamentos é fundamental para garantir sua eficácia e segurança. Os métodos convencionais para identificação microbiana em produtos não estéreis são amplamente utilizados, entretanto são demorados e trabalhosos. O objetivo deste trabalho é desenvolver método microbiológico rápido (MMR) para a identificação de contaminantes em produtos farmacêuticos utilizando a espectrofotometria de infravermelho com transformada de Fourier com reflectância total atenuada (FTIR-ATR). Análise de componentes principais (PCA) e análise de discriminantes (LDA) foram utilizadas para obter um modelo de predição com a capacidade de diferenciar o crescimento de oriundo de contaminação por Bacillus subtilis (ATCC 6633), Candida albicans (ATCC 10231), Enterococcus faecium (ATCC 8459), Escherichia coli (ATCC 8739), Micrococcus luteus (ATCC 10240), Pseudomonas aeruginosa (ATCC 9027), Salmonella Typhimurium (ATCC 14028), Staphylococcus aureus (ATCC 6538) e Staphylococcus epidermidis (ATCC 12228). Os espectros de FTIR-ATR forneceram informações quanto à composição de proteínas, DNA/RNA, lipídeos e carboidratos provenientes do crescimento microbiano. As identificações microbianas fornecidas pelo modelo PCA/LDA baseado no método FTIR-ATR foram compatíveis com aquelas obtidas pelos métodos microbiológicos convencionais. O método de identificação microbiana rápida por FTIR-ATR foi validado quanto à sensibilidade (93,5%), especificidade (83,3%) e limite de detecção (17-23 UFC/mL de amostra). Portanto, o MMR proposto neste trabalho pode ser usado para fornecer uma identificação rápida de contaminantes microbianos em produtos farmacêuticos. / Microbiological quality of pharmaceuticals is fundamental in ensuring efficacy and safety of medicines. Conventional methods for microbial identification in non-sterile drugs are widely used, however are time-consuming and laborious. The aim of this paper was to develop a rapid microbiological method (RMM) for identification of contaminants in pharmaceutical products using Fourier transform infrared with attenuated total reflectance spectrometry (FTIR-ATR). Principal components analysis (PCA) and linear discriminant analysis (LDA) were used to obtain a predictive model with capable to distinguish Bacillus subtilis (ATCC 6633), Candida albicans (ATCC 10231), Enterococcus faecium (ATCC 8459), Escherichia coli (ATCC 8739), Micrococcus luteus (ATCC 10240), Pseudomonas aeruginosa (ATCC 9027), Salmonella Typhimurium (ATCC 14028), Staphylococcus aureus (ATCC 6538), and Staphylococcus epidermidis (ATCC 12228) microbial growth. FTIR-ATR spectra provide information of protein, DNA/RNA, lipids, and carbohydrates constitution of microbial growth. Microbial identification provided by PCA/LDA based on FTIR-ATR method were compatible to those obtained using conventional microbiological methods. FTIR-ATR method for rapid identification of microbial contaminants in pharmaceutical products was validated by assessing the sensitivity (93.5%), specificity (83.3%), and limit of detection (17-23 CFU/mL of sample). Therefore, the RMM proposed in this work may be used to provide a rapid identification of microbial contaminants in pharmaceutical products.

With the advent of computers and the information age, vast amounts of data generated in a great deal of science and industry fields require the statisticians to explore further. In particular, statistical and computational problems in biology and medicine have created a new field of bioinformatics, which is attracting more and more statisticians, computer scientists, and biologists. Several procedures have been developed for tracing the source of fecal pollution in water resources based on certain characteristics of certain microorganisms. Use of this collection of techniques has been termed microbial source tracking (MST). Most of the current methods for MST are based on patterns of either phenotypic or genotypic variation in indicator organisms. Studies also suggested that patterns of genotypic variation might be more reliable due to their less association with environmental factors than those of phenotypic variation. Among the genotypic methods for source tracking, fingerprinting via rep-PCR is most common. Thus, identifying the specific pollution sources in contaminated waters based on rep-PCR fingerprinting techniques, viewed as a classification problem, has become an increasingly popular research topic in bioinformatics. In the project, several statistical methods for classification were studied, including linear discriminant analysis, quadratic discriminant analysis, logistic regression, and $k$-nearest-neighbor rules, neural networks and support vector machine. This project report summaries each of these methods and relevant statistical theory. In addition, an application of these methods to a particular set of MST data is presented and comparisons are made.

In this thesis, improving the performance of the automatic recognition of the Doppler radar targets is studied. The radar used in this study is a ground-surveillance doppler radar. Target types are car, truck, bus, tank, helicopter, moving man and running man. The input of this thesis is the output of the real doppler radar signals which are normalized and preprocessed (TRP vectors: Target Recognition Pattern vectors) in the doctorate thesis by Erdogan (2002). TRP vectors are normalized and homogenized doppler radar target signals with respect to target speed, target aspect angle and target range. Some target classes have repetitions in time in their TRPs. By the use of these repetitions, improvement of the target type classification performance is studied. K-Nearest Neighbor (KNN) and Support Vector Machine (SVM) algorithms are used for doppler radar target classification and the results are evaluated. Before classification PCA (Principal Component Analysis), LDA (Linear Discriminant Analysis), NMF (Nonnegative Matrix Factorization) and ICA (Independent Component Analysis) are implemented and applied to normalized doppler radar signals for feature extraction and dimension reduction in an efficient way. These techniques transform the input vectors, which are the normalized doppler radar signals, to another space. The effects of the implementation of these feature extraction algoritms and the use of the repetitions in doppler radar target signals on the doppler radar target classification performance are studied.

O uso de dados biométricos da face para verificação automática de identidade é um dos maiores desafios em sistemas de controle de acesso seguro. O processo é extremamente complexo e influenciado por muitos fatores relacionados à forma, posição, iluminação, rotação, translação, disfarce e oclusão de características faciais. Hoje existem muitas técnicas para se reconhecer uma face. Esse trabalho apresenta uma investigação buscando identificar uma face no banco de dados ORL com diferentes grupos de treinamento. É proposto um algoritmo para o reconhecimento de faces baseado na técnica de subespaço LDA (PCA + LDA) utilizando uma rede neural SOM para representar cada classe (face) na etapa de classificação/identificação. Aplicando o método do subespaço LDA busca-se extrair as características mais importantes na identificação das faces previamente conhecidas e presentes no banco de dados, criando um espaço dimensional menor e discriminante com relação ao espaço original. As redes SOM são responsáveis pela memorização das características de cada classe. O algoritmo oferece maior desempenho (taxas de reconhecimento entre 97% e 98%) com relação às adversidades e fontes de erros que prejudicam os métodos de reconhecimento de faces tradicionais. / The use of biometric technique for automatic personal identification is one of the biggest challenges in the security field. The process is complex because it is influenced by many factors related to the form, position, illumination, rotation, translation, disguise and occlusion of face characteristics. Now a days, there are many face recognition techniques. This work presents a methodology for searching a face in the ORL database with some different training sets. The algorithm for face recognition was based on sub-space LDA (PCA + LDA) technique using a SOM neural net to represent each class (face) in the stage of classification/identification. By applying the sub-space LDA method, we extract the most important characteristics in the identification of previously known faces that belong to the database, creating a reduced and more discriminated dimensional space than the original space. The SOM nets are responsible for the memorization of each class characteristic. The algorithm offers great performance (recognition rates between 97% and 98%) considering the adversities and sources of errors inherent to the traditional methods of face recognition.

O uso de dados biométricos da face para verificação automática de identidade é um dos maiores desafios em sistemas de controle de acesso seguro. O processo é extremamente complexo e influenciado por muitos fatores relacionados à forma, posição, iluminação, rotação, translação, disfarce e oclusão de características faciais. Hoje existem muitas técnicas para se reconhecer uma face. Esse trabalho apresenta uma investigação buscando identificar uma face no banco de dados ORL com diferentes grupos de treinamento. É proposto um algoritmo para o reconhecimento de faces baseado na técnica de subespaço LDA (PCA + LDA) utilizando uma rede neural SOM para representar cada classe (face) na etapa de classificação/identificação. Aplicando o método do subespaço LDA busca-se extrair as características mais importantes na identificação das faces previamente conhecidas e presentes no banco de dados, criando um espaço dimensional menor e discriminante com relação ao espaço original. As redes SOM são responsáveis pela memorização das características de cada classe. O algoritmo oferece maior desempenho (taxas de reconhecimento entre 97% e 98%) com relação às adversidades e fontes de erros que prejudicam os métodos de reconhecimento de faces tradicionais. / The use of biometric technique for automatic personal identification is one of the biggest challenges in the security field. The process is complex because it is influenced by many factors related to the form, position, illumination, rotation, translation, disguise and occlusion of face characteristics. Now a days, there are many face recognition techniques. This work presents a methodology for searching a face in the ORL database with some different training sets. The algorithm for face recognition was based on sub-space LDA (PCA + LDA) technique using a SOM neural net to represent each class (face) in the stage of classification/identification. By applying the sub-space LDA method, we extract the most important characteristics in the identification of previously known faces that belong to the database, creating a reduced and more discriminated dimensional space than the original space. The SOM nets are responsible for the memorization of each class characteristic. The algorithm offers great performance (recognition rates between 97% and 98%) considering the adversities and sources of errors inherent to the traditional methods of face recognition.