Geochemistry plays a vital role in our understanding mechanisms behind major geological systems such as the Earth's crust and its oceans (Albarède, F. 2003). More recently, geo-chemistry has played a vital role in the field of forensic investigation and in period dating. Forensic soil samples have been traditionally analysed via examinations of colour, texture and mineral content by physical or chemical methods. However, these methods leave any organic or water-soluble fractions unexamined. Tephrochronology (the dating of sedimentary sequences using volcanic ash layers) is an important tool for the dating and correlation of sedimentary sequences containing archives and proxies of past environmental change. Its importance in this area has increased since the increased free carbon in out atmosphere has made radio-carbon dating unreliable. Tephrochronology requires successful geo-chemical identification of the tephras, a method reliant on electron probe micro-analysis (EPMA) to analyse major element composition. However, it is often impossible to differentiate key tephra layers using EPMA alone. Raman spectroscopy is commonly used in chemistry, since vibrational information is specific to the chemical bonds and symmetry of molecules, and can provide a fingerprint by which these can be identified. Here, we demonstrate how Raman spectroscopy can be used for the successful discrimination of mineral species in tephra through the analysis of individual glass shards. We further demonstrate how, with the use of oxidative preparation methods, Raman spectroscopy can be used to successfully discriminate between soil types using mineralogy as well as the organic and water-soluble fractions of soils.

Geochemistry plays a vital role in our understanding mechanisms behind major geological systems such as the Earth's crust and its oceans (Albarède, F. 2003). More recently, geo-chemistry has played a vital role in the field of forensic investigation and in period dating. Forensic soil samples have been traditionally analysed via examinations of colour, texture and mineral content by physical or chemical methods. However, these methods leave any organic or water-soluble fractions unexamined. Tephrochronology (the dating of sedimentary sequences using volcanic ash layers) is an important tool for the dating and correlation of sedimentary sequences containing archives and proxies of past environmental change. Its importance in this area has increased since the increased free carbon in out atmosphere has made radio-carbon dating unreliable. Tephrochronology requires successful geo-chemical identification of the tephras, a method reliant on electron probe micro-analysis (EPMA) to analyse major element composition. However, it is often impossible to differentiate key tephra layers using EPMA alone. Raman spectroscopy is commonly used in chemistry, since vibrational information is specific to the chemical bonds and symmetry of molecules, and can provide a fingerprint by which these can be identified. Here, we demonstrate how Raman spectroscopy can be used for the successful discrimination of mineral species in tephra through the analysis of individual glass shards. We further demonstrate how, with the use of oxidative preparation methods, Raman spectroscopy can be used to successfully discriminate between soil types using mineralogy as well as the organic and water-soluble fractions of soils.

Biometrics includes the study of automatic methods for distinguishing human beings based on physical or behavioral traits. The problem of finding good biometric features and recognition methods has been researched extensively in recent years. Our research considers the use of ears as a biometric for human recognition. Researchers have not considered this biometric as much as others, which include fingerprints, irises, and faces. This thesis presents a novel approach to recognize individuals based on their outer ear images through spatial segmentation. This approach to recognizing is also good for dealing with occlusions. The study will present several feature extraction techniques based on spatial segmentation of the ear image. The study will also present a method for classifier fusion. Principal components analysis (PCA) is used in this research for feature extraction and dimensionality reduction. For classification, nearest neighbor classifiers are used. The research also investigates the use of ear images as a supplement to face images in a multimodal biometric system. Our base eigen-ear experiment results in an 84% rank one recognition rate, and the segmentation method yielded improvements up to 94%. Face recognition by itself, using the same approach, gave a 63% rank one recognition rate, but when complimented with ear images in a multimodal system improved to 94% rank one recognition rate. / Master of Science

L'huile d'olive est un élément important de l'alimentation méditerranéenne. Cependant lorsqu'une huile vieillit, elle se dégrade et perd ses propriétés. Il est donc important de connaitre l'évolution de la composition de l'huile en fonction de ses conditions de stockage et de fabrication. Ce suivi a été effectué sur deux huiles de fabrication différente, une huile fruité vert et une huile fruité noir, obtenue à partir d'olive à maturité que l'on a laissé fermenter quelques jours. De manière à obtenir rapidement des vieillissements poussés, ces deux huiles ont été vieillies artificiellement, par procédé thermique , et par procédé photochimique. Ces vieillissements ont été réalisés sur des volumes différents de manière à déterminer l'impact du rapport surface/masse. En parallèle, des échantillons de chacune des deux huiles ont été conservés durant 24 mois dans des conditions de stockage différentes déterminées à l'aide d'un plan d'expériences. Les paramètres influençant le plus la conservation de l'huile d'olive sont l'apport en oxygène, la luminosité et la température. Ces influences ont été déterminées à partir du suivi des principaux paramètres de qualité La réponse des plans a permis de mettre en évidence des interactions entre ces différents paramètres. L'analyse de la composition de l'huile ainsi que de tous les critères de qualité demande beaucoup de temps et consomme une grande quantité de solvant. Afin de pallier à ces désagréments, les résultats ont également été utilisés pour construire des modèles chimiométriques permettant de déterminer ces grandeurs à partir des spectres proche et moyen infrarouge des échantillons. / Olive oil is an important component of the Mediterranean diet. When oil ages, it deteriorates and loses its properties. It is therefore important to know the evolution of the oil composition according to the conditions of storage and manufacturing. This monitoring was carried out on two different oils manufacturing, green fruity oil obtained from olives harvested before maturity, and black fruit oil obtained from olives harvest at maturity and fermented for few days under controlled conditions. To obtain quickly pushed aging, these two oils were artificially aged by heat process (heated to 180 °C under supply of O2), and photochemical process (under an UV lamp and under supply of O2). These aging were performed on different volumes to determine the impact of surface/weight ratio. In parallel, samples of both oils were stored for 24 months under different storage conditions determined using an experimental design. The parameters affecting the most the conservation of olive oil are oxygen, light and temperature. These influences were determined from the monitoring of key quality criteria. Response of experimental design helped to highlight the interactions between these different parameters. The analysis of the oil composition as well as all the quality criteria requires a large amount of solvents and a lot of time consumer. To overcome these inconveniences, chemometric models has been built to determine these criteria from the near and mid-infrared spectra of samples. Natural aging is very little advanced in comparison to accelerated aging, so predictive models were established from the results of natural aging and accelerated separately.

The sheer number, continuous emergence, heterogeneity and wide chemical and structural diversity of New Psychoactive Substance (NPS) products are factors being exploited by illicit drug designers to obscure detection of these compounds. Despite the advances in analytical techniques currently used by forensic and toxicological scientists in order to enable the identification of NPS, the lack of a priori knowledge of sample content makes it very challenging to detect an 'unknown' substance. The work presented in this thesis serves as a proof-of-concept by combining similarity studies, Raman spectroscopy and chemometrics, underpinned by robust pre-processing methods for the identification of existing or newly emerging NPS. It demonstrates that the use of Raman spectroscopy, in conjunction with a 'representative' NPS Raman database and chemometric techniques, has the potential for rapidly and non-destructively classifying NPS according to their chemical scaffolds. The work also demonstrates the potential of indicating the purity in formulations typical of those purchased by end users of the product i.e. 'street-like' mixtures. Five models were developed, and three of these provided an insight into the identification and classification of NPS depending on their purity. These are: the 'NPS and non-NPS/benchtop' model, the 'NPS reference standards/handheld' model and the 'NPS and non-NPS/handheld' model. In the 'NPS and non-NPS/benchtop' model (laser λex = 785 nm), NPS internet samples were projected onto a PCA model derived from a Raman database comprising 'representative' NPSs and cutting agent/ adulterant reference standards. This proved the most successful in suggesting the likely chemical scaffolds for NPS present in samples bought from the internet. In the 'NPS reference standards/handheld' model (laser λex = 1064 nm), NPS reference standards were projected onto a PCA model derived from a Raman database comprising 'representative' NPSs. This was the most successful of the three models with respect to the accurate identification of pure NPS. This model suggested chemical scaffolds in 89% of samples compared to 76% obtained with the benchtop instrument, which generally had higher fluorescent backgrounds. In the 'NPS and non-NPS/handheld' model (laser λex = 1064 nm), NPS internet samples were projected onto a PCA model derived from a Raman database comprising 'representative' NPSs and cutting agent/ adulterant reference standards. This was the most successful in differentiating between NPS internet samples dependent on their purity. In all models, the main challenges for identification of NPS were spectra displaying high fluorescent backgrounds and low purity profiles. The 'first pass' matching identification of NPS internet samples on a handheld platform was improved to ~50% using a laser source of 1064 nm because of a reduction in fluorescence at this wavelength. We outline limitations in using a handheld platform that may have added to problems with appropriate identification of NPS in complex mixtures. However, the developed models enabled the appropriate selection of Raman signals crucial for identification of NPS via data reduction, and the extraction of important patterns from noisy and/or corrupt data. The models constitute a significant contribution in this field with respect to suggesting the likely chemical scaffold of an 'unknown' molecule. This insight may accelerate the screening of newly emerging NPS in complex matrices by assigning them to: a structurally similar known molecule (supercluster/ cluster); or a substance from the same EMCDDA/EDND class of known compounds. Critical challenges in instrumentation, chemometrics, and the complexity of samples have been identified and described. As a result, future work should focus on: optimising the pre-processing of Raman data collected with a handheld platform and a 1064 nm laser λex; and optimising the 'representative' database by including other properties and descriptors of existing NPS.

A qualidade microbiológica de medicamentos é fundamental para garantir sua eficácia e segurança. Os métodos convencionais para identificação microbiana em produtos não estéreis são amplamente utilizados, entretanto são demorados e trabalhosos. O objetivo deste trabalho é desenvolver método microbiológico rápido (MMR) para a identificação de contaminantes em produtos farmacêuticos utilizando a espectrofotometria de infravermelho com transformada de Fourier com reflectância total atenuada (FTIR-ATR). Análise de componentes principais (PCA) e análise de discriminantes (LDA) foram utilizadas para obter um modelo de predição com a capacidade de diferenciar o crescimento de oriundo de contaminação por Bacillus subtilis (ATCC 6633), Candida albicans (ATCC 10231), Enterococcus faecium (ATCC 8459), Escherichia coli (ATCC 8739), Micrococcus luteus (ATCC 10240), Pseudomonas aeruginosa (ATCC 9027), Salmonella Typhimurium (ATCC 14028), Staphylococcus aureus (ATCC 6538) e Staphylococcus epidermidis (ATCC 12228). Os espectros de FTIR-ATR forneceram informações quanto à composição de proteínas, DNA/RNA, lipídeos e carboidratos provenientes do crescimento microbiano. As identificações microbianas fornecidas pelo modelo PCA/LDA baseado no método FTIR-ATR foram compatíveis com aquelas obtidas pelos métodos microbiológicos convencionais. O método de identificação microbiana rápida por FTIR-ATR foi validado quanto à sensibilidade (93,5%), especificidade (83,3%) e limite de detecção (17-23 UFC/mL de amostra). Portanto, o MMR proposto neste trabalho pode ser usado para fornecer uma identificação rápida de contaminantes microbianos em produtos farmacêuticos. / Microbiological quality of pharmaceuticals is fundamental in ensuring efficacy and safety of medicines. Conventional methods for microbial identification in non-sterile drugs are widely used, however are time-consuming and laborious. The aim of this paper was to develop a rapid microbiological method (RMM) for identification of contaminants in pharmaceutical products using Fourier transform infrared with attenuated total reflectance spectrometry (FTIR-ATR). Principal components analysis (PCA) and linear discriminant analysis (LDA) were used to obtain a predictive model with capable to distinguish Bacillus subtilis (ATCC 6633), Candida albicans (ATCC 10231), Enterococcus faecium (ATCC 8459), Escherichia coli (ATCC 8739), Micrococcus luteus (ATCC 10240), Pseudomonas aeruginosa (ATCC 9027), Salmonella Typhimurium (ATCC 14028), Staphylococcus aureus (ATCC 6538), and Staphylococcus epidermidis (ATCC 12228) microbial growth. FTIR-ATR spectra provide information of protein, DNA/RNA, lipids, and carbohydrates constitution of microbial growth. Microbial identification provided by PCA/LDA based on FTIR-ATR method were compatible to those obtained using conventional microbiological methods. FTIR-ATR method for rapid identification of microbial contaminants in pharmaceutical products was validated by assessing the sensitivity (93.5%), specificity (83.3%), and limit of detection (17-23 CFU/mL of sample). Therefore, the RMM proposed in this work may be used to provide a rapid identification of microbial contaminants in pharmaceutical products.

On suppose que des vecteurs de données de grande dimension arrivant en ligne sont des observations indépendantes d'un vecteur aléatoire. Dans le second chapitre, ce dernier, noté Z, est partitionné en deux vecteurs R et S et les observations sont supposées identiquement distribuées. On définit alors une méthode récursive d'estimation séquentielle des r premiers facteurs de l'ACP projetée de R par rapport à S. On étudie ensuite le cas particulier de l'analyse canonique, puis de l'analyse factorielle discriminante et enfin de l'analyse factorielle des correspondances. Dans chacun de ces cas, on définit plusieurs processus spécifiques à l'analyse envisagée. Dans le troisième chapitre, on suppose que l'espérance En du vecteur aléatoire Zn dont sont issues les observations varie dans le temps. On note Rn = Zn - En et on suppose que les vecteurs Rn forment un échantillon indépendant et identiquement distribué d'un vecteur aléatoire R. On définit plusieurs processus d'approximation stochastique pour estimer des vecteurs directeurs des axes principaux d'une analyse en composantes principales (ACP) partielle de R. On applique ensuite ce résultat au cas particulier de l'analyse canonique généralisée (ACG) partielle après avoir défini un processus d'approximation stochastique de type Robbins-Monro de l'inverse d'une matrice de covariance. Dans le quatrième chapitre, on considère le cas où à la fois l'espérance et la matrice de covariance de Zn varient dans le temps. On donne finalement des résultats de simulation dans le chapitre 5 / High dimensional data are supposed to be independent on-line observations of a random vector. In the second chapter, the latter is denoted by Z and sliced into two random vectors R et S and data are supposed to be identically distributed. A recursive method of sequential estimation of the factors of the projected PCA of R with respect to S is defined. Next, some particular cases are investigated : canonical correlation analysis, canonical discriminant analysis and canonical correspondence analysis ; in each case, several specific methods for the estimation of the factors are proposed. In the third chapter, data are observations of the random vector Zn whose expectation En varies with time. Let Rn = Zn - En be and suppose that the vectors Rn form an independent and identically distributed sample of a random vector R. Stochastic approximation processes are used to estimate on-line direction vectors of the principal axes of a partial principal components analysis (PCA) of ~Z. This is applied next to the particular case of a partial generalized canonical correlation analysis (gCCA) after defining a stochastic approximation process of the Robbins-Monro type to estimate recursively the inverse of a covariance matrix. In the fourth chapter, the case when both expectation and covariance matrix of Zn vary with time n is considered. Finally, simulation results are given in chapter 5

Conselho Nacional de Desenvolvimento Científico e Tecnológico / This study addresses the distribution of trace metals in sediment cores from the dam Marcela in order to evaluate the occurrence of impacts associated with human and industrial activity. The dam is located in the city Itabaiana in the state of Sergipe, it was built in the period 1953 - 1957 barring Fuzil stream. It has an area of 1.4 km2 with storage capacity of 2,700,000 m3. Two sediment cores were collected in November of 2008 with approximately 45cm in two distinct points. The samples were sectioned in 5 cm each and they were analyzed by to determine the following chemical elements: Co, Cr, Cu, Ni, Pb, Zn, Mn, Al, Fe, Corg and Ntotal. The average value of Corg/Ntotal in the range 4,97- 7,64 and 6,39-7,69, for cores I and II respectively, indicative autochthonous and allochthonous origin of the organic matter. The multivariate statistical analysis (Principal component analysis) applied to the set of results showed that the two cores in relation to concentrations of metals are different, with evidence of enrichment for Cr, Cu, Mn and Zn in the surface layers. The contamination factor calculed showed contamination moderate level for metals Cr, Cu, Mn and Zn. The risk assessment code (RAC), which consider the percentage of metal extracted in the label fraction (F1) of BCR procedure, showed that chromium does not present risk to the environment, copper, nickel and lead were low to medium risk, and zinc had of very high to High risk to the aquatic environment. Small variations in environmental conditions, such as pH or salinity, could therefore increase availability of the elements to the aquatic system. The metals concentrations were always at the lower limit the TEC and PEC, defined by consensual sediment quality guidelines (SQGs), in this case, it is not possible to predict what adverse effects the metal can cause in this environment. / Neste trabalho foi determinada a distribuição de metais traço em testemunhos de sedimento do Açude Marcela com o objetivo de avaliar a ocorrência de impactos associados à atividade humana e industrial, desenvolvidas naquela região. O Açude Marcela localiza-se na cidade de Itabaiana Sergipe, foi construído no período 1953 à 1957 pelo barramento do riacho Fuzil e tem uma área de 1,4km2 , com capacidade de armazenamento de 2.700.000 m3. Foram coletados em novembro de 2008 dois testemunhos de sedimentos com aproximadamente 45cm de profundidade em dois pontos distintos do açude. Os testemunhos foram secionados a cada 5cm para determinação dos seguintes elementos químicos: Co, Cr, Cu, Ni, Pb, Zn, Mn, Al, Fe, Corg e Ntotal. A relação Corg/Ntotal variou de 4,97-7,64 e 6,39-7,69 para os testemunhos I e II, respectivamente, indicando origem autóctone e alóctone para a matéria orgânica presente no sedimento. A análise estatística multivariada (análise de componentes principais-ACP), aplicada ao conjunto dos resultados, mostrou que os dois testemunhos, em relação às concentrações dos metais, são estatisticamente diferentes, com evidências de enriquecimento por Cr, Cu, Mn e Zn, nas camadas mais superficiais. O fator de contaminação calculado mostrou um nível de contaminação moderado para os metais Cr, Cu, Mn e Zn. O Fator de Risco (RAC), que compreende a percentagem do metal extraída na fração lábil (F1) do procedimento (BCR) empregado, indicou que o cromo não apresentou risco ao ambiente. Cobre, níquel e chumbo apresentaram risco baixo a médio, e zinco apresentou risco alto a altíssimo para o ambiente aquático. Sendo assim, pequenas variações nas condições ambientais podem remobilizar esses elementos do sedimento para a coluna d água. As concentrações dos metais nos testemunhos estiveram entre TEC e o PEC, definidos pelos valores guias de qualidade de sedimento consensual (VGQS), indicando que, nas condições atuais, o sedimento pode exercer efeito adverso aos organismos do açude em questão.

Fire debris analysis currently relies on visual pattern recognition of the total ion chromatograms, extracted ion profiles, and target compound chromatograms to identify the presence of an ignitable liquid. This procedure is described in the ASTM International E1618-10 standard method. For large data sets, this methodology can be time consuming and is a subjective method, the accuracy of which is dependent upon the skill and experience of the analyst. This research aimed to develop an automated classification method for large data sets and investigated the use of the total ion spectrum (TIS). The TIS is calculated by taking an average mass spectrum across the entire chromatographic range and has been shown to contain sufficient information content for the identification of ignitable liquids. The TIS of ignitable liquids and substrates were compiled into model data sets. Substrates are defined as common building materials and household furnishings that are typically found at the scene of a fire and are, therefore, present in fire debris samples. Fire debris samples were also used which were obtained from laboratory-scale and large-scale burns. An automated classification method was developed using computational software that was written in-house. Within this method, a multi-step classification scheme was used to detect ignitable liquid residues in fire debris samples and assign these to the classes defined in ASTM E1618-10. Classifications were made using linear discriminant analysis, quadratic discriminant analysis (QDA), and soft independent modeling of class analogy (SIMCA). The model data sets iv were tested by cross-validation and used to classify fire debris samples. Correct classification rates were calculated for each data set. Classifier performance metrics were also calculated for the first step of the classification scheme which included false positive rates, true positive rates, and the precision of the method. The first step, which determines a sample to be positive or negative for ignitable liquid residue, is arguably the most important in the forensic application. Overall, the highest correct classification rates were achieved using QDA for the first step of the scheme and SIMCA for the remaining steps. In the first step of the classification scheme, correct classification rates of 95.3% and 89.2% were obtained using QDA to classify the crossvalidation test set and fire debris samples, respectively. For this step, the cross-validation test set resulted in a true positive rate of 96.2%, a false positive rate of 9.3%, and a precision of 98.2%. The fire debris data set had a true positive rate of 82.9%, a false positive rate of 1.3%, and a precision of 99.0%. Correct classifications rates of 100% were achieved for both data sets in the majority of the remaining steps which used SIMCA for classification. The lowest correct classification rate, 69.2%, was obtained for the fire debris samples in one of the final steps in the classification scheme. In this research, the first statistically valid error rates for fire debris analysis have been developed through cross-validation of large data sets. The fire debris analyst can use the automated method as a tool for detecting and classifying ignitable liquid residues in fire debris samples. The error rates reduce the subjectivity associated with the current methods and provide a level of confidence in sample classification that does not currently exist in forensic fire debris analysis.

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