A solid-phase extraction (SPE) method was developed for the determination of organochlorine pesticides, namely aldrin, alpha-BHC, beta-BHC, delta-BHC, dieldrin, endosulfan I, endosulfan II, endosulfan sulfate, endrin, endrin aldehyde, lindane, heptachlor, heptachlor epoxide, 4,4’-DDD, 4,4’-DDE and 4,4’- DDT in water. The effect of extraction conditions, such as the addition of sodium chloride and methanol to the sample prior to loading was studied. The sample was concentrated by a plain polystyrene-divinylbenzene resin, and the extract was eluted by ethyl acetate. Qualification and quantification of the target pesticides were performedby gas chromatography/ mass spectrometry (GC/MS) in the full-scan and selected ion-monitoring mode, respectively, and for better detection of pesticides in field samples the mass spectrometer was altered from electron ionization (EI) to chemical ionization mode (CI). The repeatability of the method for MilliQ-water fortified with pesticides at a level of 0.1 to 0.6 µg/l ranged from 8 to 18%, and the obtained recoveries ranged from 67 to 135%. The method was evaluated for the determination of organochlorine pesticides in fourteen surface- and groundwater samples taken from locations along King Talal Dam, King Abdullah Canal and Zarqa River in the Jordan Valley. The limit of detection of the pesticides residues in 500-ml field water samples ranged from 0.0009 to 15.7 ng/l. The obtained results confirmed the presence of trace amounts of some organochlorine pesticides in the analyzed samples, i.e. lindane and endosulfan compounds.

The biogenic reduction of Mn(IV) oxides is one of the most favorable anaerobic electron transfer processes in aquatic systems and likely plays an important role in the redox cycle of both carbon and nitrogen in anaerobic environments; yet, the different pathways involved in the microbial transformation of Mn(IV) oxides remain unclear. The coupling between the reduction of Mn(IV) to Mn(II) and the oxidation of organic carbon to CO₂ is largely catalyzed by microorganisms in various environments such as redox stratified water columns and sediments. The recent discovery that soluble Mn(III) exists in natural systems and is formed during biological oxidation of Mn(II) implies the possibility that Mn(III) is formed as an intermediate during the microbial reduction of Mn(IV). In this dissertation, mutagenesis studies and kinetic analysis were combined to study the mechanism of microbial reduction of Mn(IV) by Shewanella oneidensis MR-1, one of the most studied metal-respiring prokaryotes. We show for the first time that the microbial reduction of Mn(IV) proceeds step-wise via two successive one-electron transfer reactions with soluble Mn(III) as intermediate produced in solution. The point mutant strain Mn3, generated via random chemical mutagenesis, presents a unique phenotype that reduces solid Mn(IV) to Mn(III) but not to Mn(II), suggesting that these two reduction steps proceed via different electron transport pathways. Mutagenesis studies on various in-frame deletion mutant strains demonstrate that the reduction of both solid Mn(IV) and soluble Mn(III) occurs at the outer membrane of the cell and Mn(IV) respiration involves only one of the two potential terminal reductases (c-type cytochrome MtrC and OmcA) involved in Fe(III) respiration. Interestingly, only the second electron transfer step is coupled to the respiration of organic carbon, which opposes the long-standing paradigm that microbial reduction of Mn(IV) proceeds via the single transfer of two electrons coupled to the mineralization of carbon substrates. The coupling between anaerobic nitrification and Mn reduction has been demonstrated to be thermodynamically favorable. However, the existence of this process in natural system is still in debate. In this dissertation, characterization of coastal marine sediments was combined with laboratory incubations of the same sediments to investigate the effect of Mn oxides on the redox cycle of nitrogen. Our slurry incubations demonstrate that anaerobic nitrification is catalyzed by Mn oxides. In addition, mass balance calculations on NH₄⁺ link the consumption of NH₄⁺ to anaerobic ammonium oxidation in the presence of Mn oxides and confirm the occurrence of Mn(IV)-catalyzed anaerobic nitrification. The activity of anaerobic nitrification is greatly affected by the initial ratio of Mn(IV) to NH₄⁺, the reactivity of Mn oxides, and the reducing potential of the system. Overall, Mn(IV)-catalyzed anaerobic nitrification may be an important source of nitrite/nitrate in anaerobic marine sediments and provide an alternative pathway for subsequent nitrogen losses in the marine nitrogen cycle.

Våtmarker som anläggs på jordbruksmark kan förhindra att fosfor från åkrarna når sjöar och vattendrag och hjälper därmed till att minska övergödningen. Det är viktigt att utforma våt-marken på ett sådant sätt att så mycket som möjligt av den biotillgängliga fosforn hålls kvar. Syftet med studien var att undersöka om det finns ett positivt samband mellan lerinnehåll och fosfors biotillgänglighet i en anlagd våtmarks sediment. Syftet var även att undersöka om partikelstorleken minskar gradvis med avståndet från inloppet, det vill säga om mer lera sedimenterar närmare utloppet. Prover togs längs tre transekter från sedimentet i en våtmark i västra Östergötland och fosfor- samt partikelstorleksanalyser gjordes. Genom extraktion med ammoniumklorid (NH4Cl) kunde lättillgänglig fosfor bestämmas. Partikelstorleksanalysen gjordes med en modifierad pipettmetod, baserad på att större partiklar sedimenterar fortare än mindre partiklar. Regressionsanalys visade att partikelstorleken minskade signifikant från inlopp till utlopp i våtmarken. Däremot hittades inte några signifikanta samband mellan partikelstorlek och lättillgänglig fosfor eller totalfosfor, i motsats till resultat i andra studier. Halterna av både lera och olika fosforfraktioner i sedimentet var relativt låga och likartade vid olika provpunkter i våtmarken vilket kan ha påverkat resultaten.

In order to understand the relative impact from natural and anthropogenic sources, Principal Component Analysis - Structural Equation Modeling (PCA-SEM) was used to analyze the phytoplankton dynamics in coastal waters of Taiwan. PCA was used to analyze the changes of the water quality, followed by constructing of conceptual model which incorporated with biological data, and finally verified by SEM. Three study sites were selected: Chang Hua coastal waters, Kaohsiung mud dumping waters and the adjacent waters of Kaohsiung Nansing project. These sites represent the ordinary coastal water ecosystem of western Taiwan, off-shore ocean with one defined pollution sources, and anthropogenic impacted water area, respectively. The results showed that in Chang Hua coastal waters, river input and seasonal change were the primary factors effecting phytoplankton change. Water temperature was the main reason of phytoplankton changes, followed by the influence of dissolved organic matter in Kaohsiung mud dumping site. Whereas waters near Kaohsiung Nansing project, cooling water from Daling power plant coupled with the change of nutrients and heavy metal concentrations, as well as oil pollution, were the major causes of phytoplankton variation. The goodness-of-fits were good for the three models in this study, revealing that PCA- SEM is suitable to analyze the environmental changes of the costal waters of Taiwan. Logistic methods used in this study are also good for the study of benthic or fish community, and are suitable to apply on environmental impact assessments.

published_or_final_version / Ecology and Biodiversity / Master / Master of Philosophy

published_or_final_version / Ecology and Biodiversity / Doctoral / Doctor of Philosophy

The study area, the KwaZulu-Natal Bight, is an oceanographically important area, which, regardless of having two of the most important fisheries off the east coast of South Africa, has received little research attention regarding its biological functioning. Until now chiefly oceanographic processes have been considered the drivers of this generally oligotrophic system. This study seeks to understand which of three important processes, a topographically induced oceanic upwelling cell near Richards Bay, a cyclonic eddy near Durban, or fluvial fluxes centred around the Thukela River, forces ecological functioning through their nutrient or organic matter input. The overall aim of the thesis is to understand the pelagic and benthic ecosystems of the Bight in terms of these drivers through the use of stable isotope (δ¹³C and δ¹⁵N) analyses of a range of biotic and abiotic samples. These were collected on board of a number of research cruises – forming predominantly part of the larger African Coelacanth Ecosystem Programme suite of studies – in the wet and dry seasons of 2010. Isotopic analyses found distinctions between fluvial and oceanic particulate organic matter and indicate that upwelling was not occurring in either sampling season. Organic matter originating from the Thukela River did not play a significant role in the wet season, although it dominated the planktonic pelagic food web in the dry season. The organic matter of the most productive region in the Bight, the Middle Shelf, was of riverine origin in the dry season, but of indeterminate origin in the wet season when it may have been an artefact of an old upwelling event which had previously occurred to the north of the Bight. There is, however, some evidence suggesting that this organic matter may rather have been of riverine origin, with its δ¹³C signals subsequently having been modified by the diatom bloom occurring there. In the demersal ecosystem, sediment isotopic data show organic matter to be well-mixed throughout the Bight in both seasons, with riverine organic matter dominating most of the Bight except its northern and southern edges, where oceanic organic matter increases in importance. Sediment organic matter (most likely via the macrobenthic biota) was deemed an important food source for demersal animals and omnivory an important feeding strategy. Seasonal studies from 2008 to 2010 in the Thukela Bank area indicate that the demersal animals' stable isotope signatures responded to the seasonal isotopic changes in riverine organic matter, indicating the cross-seasonal importance of this food source to the demersal ecosystem. Parallel methodological studies examined how routine isotopic sample handling procedures could have affected the results of the ecological studies. These studies suggest that i) effects of preservation/fixation methods and the use of dyes are species-dependant; ii) acidification has no effect on zooplankton isotopic signatures, and that iii) drying methods alone and interactively with multiple thawing and refreezing of samples affect the stable isotope values offish muscle tissues. Recommendations are made for further improvements in methodology and considerations to be taken when processing samples. Overall, it is concluded that riverine input to the Bight has a more important biological role than previously thought, and that organic matter from this source is an important driver of ecosystems within the Bight throughout the year for the demersal and pelagic ecosystems. / Thesis (Ph.D.)-University of KwaZulu-Natal, Westville, 2012.

The Arctic region has experienced the largest degree of anthropogenic warming, causing rapid, yet variable sea-ice loss. The effects of this warming on the Canadian Beaufort Shelf have led to a longer ice-free season which has assisted the expansion of northern development, mainly in the oil and gas sector. Both these direct and indirect effects of climate change will likely impact the marine ecosystem of this region, in which benthic fauna play a key ecological role. The aim of this thesis was to expand the current baseline knowledge of benthic fauna in the interest of developing the capacity to identify, predict and manage benthic change. The distribution of benthic macro- and megafauna was characterized utilizing community data from two recent benthic surveys on the Canadian Beaufort shelf and slope. Fauna were collected from 63 stations using box core and trawl sampling gear over the summers of 2009 through 2012 between depths of 30 and 1,000 m. Spatial patterns of abundance, biomass and α and β diversity metrics were examined. Megafaunal abundance and α diversity were elevated on the shelf compared to the slope while the macrofauna did not vary significantly with depth. Multivariate analyses illustrated that both macro- and megafaunal community composition varied more across the depth gradient than from east to west along the shelf. However the change across the depth gradient was greater for the megafauna than for the macrofauna. I proposed that megafaunal slope taxa were differentiated from shelf taxa, as faunal replacement not nestedness appeared to be the main driver of megafaunal β diversity across the depth gradient. The lack of correlation between macro- and megafauna in abundance, biomass and α and β diversity suggests that these faunal components vary at different spatial scales. These results demonstrate how separately sampling the different benthic components can yield different spatial patterns, with implications for future benthic monitoring in the region. This work contributes to the current regional baselines by providing the first comprehensive description of megafaunal distribution on the Canadian Beaufort shelf and by extending our knowledge of benthic distribution patterns deeper on the slope. / Graduate / 0329

The conversion of wave energy into electrical energy has the potential to become a clean and sustainable form of renewable energy conversion. However, like all forms of energy conversion it will inevitably have an impact on the marine environment, although not in the form of emissions of hazardous substances (gases, oils or chemicals associated with anticorrosion). Possible environmental issues associated with wave energy conversion include electromagnetic fields, alteration of sedimentation and hydrologic regimes and underwater radiated noise. Underwater noise has the potential to propagate over long distances and thus have the potential to disturb marine organisms far away from the noise source. There is great variation in the ability to perceive sound between marine organisms, one sound that is clearly audible to one species can be completely inaudible to another. Thus, to be able to determine potential environmental impact from WECs associated with underwater noise, the noise radiated from the WECs must be known. This thesis presents results from studies on the underwater radiated noise from four different full-scale WECs in the Lysekil Wave Power Project. Hydrophones were used to measure the underwater radiated noise from operating point absorbing linear WECs. The main purpose was to study the radiated noise from the operating WECs with emphasis on characteristics such as spectrum levels, Sound Pressure Level (SPL), noise duration and repetition rate. This to be able to determine the origin of the noise and if possible, implement design changes to minimize radiated noise. The results identified two main operational noises (transients with the bulk of the energy in frequencies &lt;1 kHz). The SPL of the radiated noise fluctuated significantly, depending on wave height. Broadband SPLrms of the measurements ranged between ~110 dB and ~140 dB re 1 µPa and SPLpeak of specific noises ranges between ~140 and ~180 dB re µPa. Audibility was estimated range from 1km to 15 km depending critically on species and on assumptions of propagation loss. The noise is not expected to have any negative effects on behaviour or mask any signals, unless in the vicinity (&lt;150m) of the WECs in significant wave heights. No physical damage, even in close vicinity are expected on either fish or marine mammals. Having the aim to have as little impact on the environment a possible, these studies are important. This way precautions can be implemented early in the technical development of this kind of renewable energy converters. The benefits from the WECs the Lysekil wave power project are believed to outweigh possible environmental impacts due to underwater radiated noise. / <p>Vid avhandlingens tryckläggning upptäcktes inte att tidpunkt för disputation var fel.</p>

Coral reefs are the most diverse marine ecosystem, but are increasingly threatened by local and global anthropogenic changes. In this thesis, I examine the impact of local stressors on the spatial variability of coral reef fish community composition by modeling the !-diversity of 35 islands across the Pacific Ocean that are characterized by either low or high human disturbance. By examining !-diversity across three spatial scales (within island, within island group, and across island group), and using null models to control for differences in alpha-diversity or abundance, I reveal previously undocumented effects of human disturbance on coral reef fish assemblages. At all scales, human disturbances alter !-diversity. At the largest-scale, islands with high human disturbance have lower incidence- and abundance-based !-diversity, consistent with biotic homogenization. This pattern was driven by both species with high and low abundances that differed across islands. At the smaller two scales (within islands or island groups), the presence of low abundance species is more variable on islands with high human disturbance (manifest in greater incidence-based !-diversity), but these islands have lower abundance-based !- diversity driven by moderately abundant and widespread species. Multivariate techniques show that islands with high human disturbance have a weaker species-environment relationship, and as such, I suggest that homogenization of coral reef fish assemblages by human disturbances is resulting in greater stochasticity of species composition. / Graduate / 0329 / wiwchar@uvic.ca