The use of slower acid-producing starter bacteria for the production of lower fat Cheddar cheese has lead to milder flavor Cheddar cheeses that lack intense Cheddar notes. The metabolism of methionine leads to the production of methanethiol, which is one of the desirable Cheddar cheese flavor compounds. The influence of NaCl and reduced pH was determined for aminopeptidase, lipase/ esterase, and methanethiol-producing capability in selected lactic acid bacteria and brevibacteria in simulated cheese-like conditions. The activity of each enzyme decreased with NaCl addition and pH reduction to approximate a Cheddar cheese environment (5% NaCl and pH 5.2). The mechanism for methanethiol production by the starter and adjunct bacteria was also investigated. Different enzyme systems were found to be responsible for methanethiol production in starter lactococci, lactobacilli, and brevibacteria. In the lactococci, enzymes that acted primarily on cystathionine were responsible for methanethiol production from methionine. Lactobacilli also contained cystathionine-degrading enzymes, but these enzymes have properties different from the lactococcal enzymes. Brevibacterium linensBL2 lacked cystathionine-degrading enzymes, but was capable of the direct conversion of methionine to methanethiol. L-Methionine γ-lyase from B. linens BL2 was purified to homogeneity, and was found to catalyze the α, γ elimination of methionine resulting in the production of methanethiol, α-ketobutyrate, and ammonia. Characterization of the pure enzyme demonstrated that it is pyridoxal phosphate dependent, which is active at salt and pH conditions existing in ripening Cheddar cheese. The addition of either B. linens BL2 or L-methionine γ-lyase to aseptic cheese curd slurries increased methanethiol and total volatile sulfur compound production. In an attempt to increase methanethiol production and Cheddar cheese flavor in reduced-fat Cheddar cheese, B. linens BL2 was added as a starter adjunct to 60% reduced-fat cheese. Sensory evaluation of the cheese indicated that B. linens BL2 improved the flavor of 60% reduced-fat Cheddar cheese. This suggests that the addition of B. linens BL2 is an alternative to the addition of lactic acid bacteria to improve Cheddar cheese flavor via the metabolism of methionine.

One chemoautotrophic origin of life theory posits the abiotic formation of alkyl thiols as an initial step to forming biomolecules and eventually a simple chemoautotrophic cell. The premise of this theory is that a recurring reaction on the charged surfaces of pyrite served as a primordial metabolism analogous to the reductive acetyl-CoA pathway (Wächtershäuser 1988) that was later enveloped by a primitive cellular membrane. Alkyl thiols have not previously been identified in terrestrial hot springs as unequivocally abiogenic, but they have been produced in the laboratory under hydrothermal conditions in the presence of a catalyst. I analyzed the dissolved gas content of several hot springs and conducted sterile laboratory experiments in order to evaluate the abiogenic formation of methanethiol (CH3SH), the simplest of the alkyl thiols. Specifically of interest was Cinder Pool, an acid-sulfate-chloride hot spring in Yellowstone National Park. This spring is unusual in that it contains a subaqueous molten sulfur layer (~18 m depth) and thousands of iron- vii sulfur-spherules floating on the surface, which are created by gas bubbling through the molten floor of the spring. This material could potentially serve as a reactive and catalytic surface for abiogenic CH3SH formation in Cinder Pool. Gas samples were collected from Cinder Pool and an adjacent hydrothermal feature in fall of 2011 using the bubble strip method. Two samples contained measurable quantities of CH3SH and other organic sulfur gases, with concentrations of all gases generally higher at the bottom of the pool. Laboratory microcosm experiments were conducted to replicate these findings in a sterile environment. Analog Cinder Pool water was injected into serum bottles containing different iron-sulfur compounds, including cinders collected from the pool itself, as catalytic surfaces for the CH3SH generating reaction. The bottles were then charged with hydrogen (H2), carbon dioxide (CO2), and carbon disulfide (CS2) as reaction gases and incubated for a week at temperatures between 60 and 100oC. Bottles used either powdered FeS, FeS2 (pyrite) or cinder material as a catalytic surface, and all of these surfaces were capable of catalyzing CH3SH formation. In bottles without imposed CS2, however, cinder material was the only surface that produced any detectable CH3SH. While CH3SH is central to the autotroph-first theory and has been synthesized in the laboratory (e.g. Heinen and Lauwers 1996), it has not previously been observed to form abiotically in natural systems. I have identified CH3SH in a natural hydrothermal feature where it is unlikely to have formed secondary to microbial activity, and I have duplicated these field findings in sterile laboratory experiments using the cinders as a reactive surface for formation. / text

The reactions of atomic hydrogen with methanethiol and that of atomic hydrogen with carbon disulfide were studied experimentally using flash-photolysis resonance-fluorescence techniques. Rate constants were determined over a range of temperatures and pressures, and through analysis and comparison to theoretical work details of the reactions were ascertained.

Le méthanethiol (MeSH) est un intermédiaire important dans la synthèse de la méthionine, un acide aminé largement utilisé dans l'industrie agro-alimentaire. Le marché étant en constante augmentation, il est indispensable d'optimiser la formation de MeSH à partir de méthanol (MeOH) et de sulfure d'hydrogène (H2S) en présence de K2WO4/Al2O3 (10,5 % massique). L'impact de paramètres clés, tels la conversion du méthanol, la température ou le rapport molaire H2S/MeOH a été étudié dans des conditions proches de celles du procédé. Un fort effet inhibiteur de l'eau, co-produit de la réaction, a été mis en évidence, aussi bien sur l'activité catalytique que sur les sélectivités des différents produits. En revanche, le dioxyde de carbone (CO2) et le monoxyde de carbone (CO), produits non valorisables, n'ont aucun impact sur les performances du catalyseur. Un schéma réactionnel complet a été établi rendant compte de la formation des différents produits de réaction. Un modèle cinétique faisant intervenir le formalisme de Langmuir-Hinshelwood, en accord avec les résultats expérimentaux, a été développé.La caractérisation du catalyseur K2WO4/Al2O3 a confirmé que le site actif est une paire acide-base, l'acidité étant apporté par le tungstène alors que le potassium génèrerait une basicité à la surface du matériau. A partir de ces observations, la mesure des performances catalytiques de solides à base de terres rares, présentant une acidité et une basicité plus fortes, montre que ceux-ci sont plus actifs que le catalyseur K2WO4/Al2O3, tout en conservant une sélectivité en MeSH similaire. / Methanethiol (MeSH) is a key intermediate involved in the synthesis of methionine, an essential amino acid widely used in food-processing industry. Given that methionine market is constantly growing, optimizing MeSH production from methanol (MeOH) and hydrogen sulfide (H2S) is of paramount importance. The impact of key parameters, such as MeOH conversion, temperature, or H2S/MeOH molar ratio has been studied in a range consistent with industrial conditions. A strong inhibiting effect of water (which is the co-product of the reaction) has been highlighted, both on catalytic activity and selectivities towards the different products. However, carbon dioxide (CO2) and carbon monoxide (CO), which are non-recoverable products, have no influence on catalytic performances. A complete reaction scheme accounting for the formation of the different reaction products has been proposed. A kinetic model using Langmuir-Hinshelwood formalism was developed, which affords precise estimation of experimental data.Characterization of K2WO4/Al2O3 catalyst confirmed that acid-base dual sites were the active sites responsible for MeSH formation. Acidity is mainly brought by tungsten species whereas potassium addition allows increasing the basicity of the catalyst. Based on these observations, the catalytic performances of rare-earth based oxides, which possess stronger acidity and basicity, have been measured. These materials exhibit significantly higher activity than K2WO4/Al2O3 catalyst, with similar MeSH selectivity.

La détection et l'identification de bactéries pathogènes revêt une grande importance dans de nombreux domaines tels que la santé et l’industrie agroalimentaire. Dans ce contexte, les travaux de thèse s’intéressent à détection non invasive de Salmonella via la fraction volatile de son métabolome dont les métabolites volatils caractéristiques sont le sulfure d’hydrogène et la cadavérine. Ils illustrent également le concept de substrats osmogènes libérant des mCOV exogènes sous l’action d’enzyme spécifique d’Escherichia coli. Un premier capteur colorimétrique capable de distinguer le sulfure d’hydrogène du méthanethiol a été préparé. Il s’agit d’une matrice de silicate nanoporeuse dopée avec les réactifs N,N-diméthyl-p-phénylènediamine et ions Fe3+. Une bonne stabilité de l’intermédiaire réactionnel issu de ces réactifs, la quinonediimine (QD), est obtenue pour une forte concentration d’acide chlorhydrique. La réaction entre QD et 1000 ppm de sulfure d’hydrogène et de méthanethiol entraîne l’apparition respective d’une coloration verte et rouge-marron du capteur. Le capteur fluorimétrique de cadavérine, basé sur la formation d’un complexe fluorescent entre le Naphthol AS-BI déméthylé (ArOH) et la cadavérine, permet de détecter 250 ppb de cadavérine. La preuve de concept de substrats osmogènes a été illustrée avec la détection de p-nitrophénol (pNP) et de β-naphthylamine (β-NA) libérés en présence d’enzymes de E. coli, β-D-glucuronidase et L-alanine- β-naphthylamidase. Les capteurs nanoporeux produits, de taille de pores contrôlée, peuvent détecter 100 ppm de pNP, composé coloré (jaune) et 100 ppm de β-NA, composé fluorescent, ou encore 100 ppm de β-NA par dérivation chimique de ce dernier avec le diméthyl-p-aminocinnamaldéhyde (formation d’un produit rouge). En milieu biologique, l’eau est un interférent majeur. / Microbial contamination of food and biological samples is a big issue in the industry as much as in the medical field. In that context, the present thesis brings innovative solutions. A first explored way is the identification of Salmonella by detecting and measuring the specific metabolomics volatile organic compounds (mVOC) released, H2S and cadaverine. Another new concept is the use of osmogenic substrates able to release mVOC under the action of specific enzyme of Escherichia coli.A first colorimetric sensor able to discriminate H2S from CH3SH was produced, using a nanoporous silicate matrix doped with N,N-dimethyl-p-phenylenediamine and Fe3+ ions. A very acidic medium is needed to stabilize the “key” intermediate of the reaction, the quinonediimine species (QD), which gives with H2S and CH3SH a green and red-brown product, respectively. The fluorimetric sensor of cadaverine is based on the formation of a fluorescent complex between AS-BI demethylated Naphthol and cadaverine and can detect 250 ppb of cadaverine. A proof of concept of osmogenic substrates is given with the detection of p-nitrophenol (pNP) et de β-naphthylamine (β-NA) released under the action of Escherichia coli enzymes, β-D-glucuronidase et L-alanine- β-naphthylamidase. Various nanoporous sensors are produced with tailored pore size, which can detect 100 ppm of the yellow pNP, 100 ppm of the fluorescent β-NA and 100 ppm of the red product issued from the derivation of β-NA with dimethyl-p-aminocinnamaldehyde. In biological media, water remains the major interfering agent.

This thesis describes the on-road analysis of criteria air pollutants (CAPs) and volatile organic compounds (VOCs) from a moving vehicle. CAPs and VOCs have numerous direct and indirect effects on the environment and public health and are generated from a variety of point and diffuse sources. The concentration of these pollutants can vary on the scale of metres and seconds due to variable emission rates of sources, meteorology, and the topography of an area. CAPs are conventionally measured on a spatial scale of tens of kilometres and one hour or longer time resolution, which limits the understanding of their impact and leaving many communities lacking information regarding their air quality. VOCs are not measured as frequently as CAPs, owing to the difficulty, challenges, and cost associated with sampling. The Mobile Mass Spectrometry Lab (MMSL) was developed to collect high geospatial (15 – 1,500 m) and temporal (1 – 10 s) resolution measurements of CAPs (O3, NOx, PM2.5), CO2, CH4, and VOCs. CAPs and greenhouse gases were monitored using standard analyzers, while VOCs were measured using a proton-transfer reaction time-of-flight mass spectrometer (PTR-MS). PTR-MS is a real-time, direct, in situ technique that can monitor VOCs in the ambient atmosphere without sample collection. The PTR-MS monitored up to mass-to-charge 330 with a sample integration time of 1 or 10 seconds and had detection limits into the low- to mid-ppt. PTR-MS is a soft ionization technique that is selective to all compounds with a proton affinity less than water, which excludes the atmospheric matrix and includes most VOCs. The measurements provided by the PTR-MS provided a rich dataset for which to develop workflow and processing methods alongside sampling strategies for the collection of high geospatial and temporal VOC data. The first on-road deployment of the MMSL was performed across the Regional District of Nanaimo and the Alberni-Clayoquot Regional District in British Columbia, Canada, from July iv 2018 – April 2019 to monitor the geospatial and temporal variation in the concentration of CAPs and VOCs. VOCs detected in the areas include hydrocarbons like toluene, C2-benzenes, and terpenes, organic acids like acetic acid, oxygenated compounds like acetone and acetaldehyde, and reduced sulfur compounds like methanethiol and dimethyl sulfide. While observed concentrations of VOCs were mostly below detection limits, concentration excursions upwards of 2,200 ppb for C2-benzenes (reported as ethylbenzene) for instance, were observed across the various communities and industries that comprise central Vancouver Island. VOCs like monoterpenes, were observed near the wood industries up to 229 ppb. Combustion related VOCs, like toluene and C2-benzenes, were often observed on major transportation corridors and was found to vary significantly between seasons, with winter measurements often exceeding those made in the summer. Reduced sulfur compounds, common components of nuisance odours, were measured around a few industries like waste management and wood industries. The second on-road deployment of the MMSL focused on the analysis of VOCs in the community around a wastewater treatment plant (WWTP) to identify the source of odours in the area. VOCs were also monitored in the odour control process of the WWTP to identify the VOCs being emitted, how much were emitted, and where potential deficiencies were in the process in a unique study. Median emission rates at the facility for methanethiol, dimethyl sulfide, and dimethyl disulfide were determined to be 100, 19, and 21 kg yr-1, respectively. VOC monitoring in the community encompassed the WWTP and the other major industries in the area, including agricultural land, a composting facility, and a marina. The highest measurements of odorous reduced sulfur compounds were observed around the WWTP, upwards of 36 ppb for methanethiol. Unsupervised multivariate analysis was performed to identify groups of VOCs present and their potential sources. Three groups were identified, one of which was related to reduced sulfur compounds. This group was observed around the WWTP, indicating that the WWTP was the likely source of malodours in the community. / Graduate