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Habitat loss and fragmentation caused by tourist development along the eastern coast of the Yucatan Peninsula of Mexico represents a big threat to the survival of Nearctic-Neotropical migratory songbirds. This habitat plays a crucial role for successful migration for many migratory birds. However, the effects of habitat loss and fragmentation on these birds have not been well documented in the region. From September- December, 2006-2008, we mist-netted and conducted transect surveys to assess the variation in the avian community among three different levels of development (high, medium and low). The study area included two small reserves (10-20 ha) in the hotel zone associated with the Riviera Maya (high development), two sites with limited development within the Sian Ka’an Biosphere Reserve associated with small fishing camps (medium development), and two undeveloped sites located on a private ranch within Sian Ka’an (low development). I assessed species richness and abundance of four avian groups: the entire community, year-round residents, winter residents, and transients. Species richness and abundance decreased significantly with the greatest levels of disturbance. The high development level had the least species richness and abundance, whereas the medium development level had the greatest richness for all bird classes. However, my results suggest that small reserves in the hotel zone can be important compliments to the large, undisturbed reserves (Sian Ka’an) for both resident and migrant birds. Forty-six percent of all birds species captured in mist nets were Nearctic-Neotropical migrants; thus this group composed a significant component of the avian community. The dominance in the year-round resident community by the endemic Black Catbird (Dumetella glabrirostris) at medium and low development sites showed that coastal dune vegetation is also important in maintaining populations of endemic species, which are sensitive to levels of disturbance. The use of two different survey methods (mist-netting and transect surveys) produced complimentary descriptions of community composition. Because many year-round resident species and migrants depend on this scarce and discontinuous coastal habitat, and because of the intense development pressure on this coastal zone, better conservation strategies are needed to successfully sustain the avian community of this region.

Habitat loss and fragmentation caused by tourist development along the eastern coast of the Yucatan Peninsula of Mexico represents a big threat to the survival of Nearctic-Neotropical migratory songbirds. This habitat plays a crucial role for successful migration for many migratory birds. However, the effects of habitat loss and fragmentation on these birds have not been well documented in the region. From September- December, 2006-2008, we mist-netted and conducted transect surveys to assess the variation in the avian community among three different levels of development (high, medium and low). The study area included two small reserves (10-20 ha) in the hotel zone associated with the Riviera Maya (high development), two sites with limited development within the Sian Ka’an Biosphere Reserve associated with small fishing camps (medium development), and two undeveloped sites located on a private ranch within Sian Ka’an (low development). I assessed species richness and abundance of four avian groups: the entire community, year-round residents, winter residents, and transients. Species richness and abundance decreased significantly with the greatest levels of disturbance. The high development level had the least species richness and abundance, whereas the medium development level had the greatest richness for all bird classes. However, my results suggest that small reserves in the hotel zone can be important compliments to the large, undisturbed reserves (Sian Ka’an) for both resident and migrant birds. Forty-six percent of all birds species captured in mist nets were Nearctic-Neotropical migrants; thus this group composed a significant component of the avian community. The dominance in the year-round resident community by the endemic Black Catbird (Dumetella glabrirostris) at medium and low development sites showed that coastal dune vegetation is also important in maintaining populations of endemic species, which are sensitive to levels of disturbance. The use of two different survey methods (mist-netting and transect surveys) produced complimentary descriptions of community composition. Because many year-round resident species and migrants depend on this scarce and discontinuous coastal habitat, and because of the intense development pressure on this coastal zone, better conservation strategies are needed to successfully sustain the avian community of this region.

Declines in breeding populations of most migrants across much of the Palearctic have been linked to environmental conditions in their African non-breeding grounds. Studying winter distribution dynamics for these species is necessary to understand how factors in these areas may influence their overall population dynamics. This thesis explored in detail the distribution ecology of migrants in the Guinea savannah, the region from where wintering migrants currently show the greatest breeding population declines. In particular, I investigated some prevailing but hitherto little tested ecological hypothesis concerning impacts of geographical, vegetation and anthropogenic characteristics on the densities and winter distribution of migrants in Africa. Migrant distribution seemed to fit a pattern where decisions leading to winter habitat choice and association were hierarchical and jointly influenced by factors extrinsic and intrinsic to the habitats at large and finer scales respectively. Migrants were distributed in reasonable densities across a wide range of habitats. There was also evidence for an independent effect of latitude on densities and distribution, even after controlling for habitat characteristics. There was no evidence of large changes in latitudinal density patterns within a given winter season and site density patterns were generally consistent over the study duration. Migrants and taxonomically-related/ecologically similar Afrotropical residents showed similarities in habitat requirements and utilization, although migrants utilized habitats over a wider latitudinal range. Some migrants tended to show correspondence in site occurrence between consecutive winters but less so within a given winter season and there was an overall low transferability of habitat models for Palearctic migrants between sites in Nigeria. Collectively, the results describe distribution mechanisms typical for ecologically flexible species that can best be described as habitat generalists. As generalists, migrants are expected to show some resilience, especially in dealing with local and small scale changes on their wintering grounds such that these are unlikely to be the primary limiting factor in their population dynamics. However, the scale of ongoing habitat change across much of Africa is perhaps contributing to overcome the resilience engendered by their generalism. Conservation efforts for these mainly generalists species may therefore aim to preserve habitat on a large scale, perhaps through the promotion of sustainable land use practices.

Anseriformes mantidos em lagos de zôos e parques estão sob constante risco de exposição às doenças presentes nas populações de aves migratórias, que dividem com eles o mesmo local durante um determinado período todos os anos. São doenças que podem ter implicações para as aves cativas, para a população humana que tem contato com essas aves e para os plantéis de produção. Assim, ações de vigilância, com o objetivo de detectar rapidamente determinadas doenças, representam alternativas interessantes para se fazer gestão de risco. O objetivo do presente estudo foi pesquisar a presença de agentes etiológicos selecionados na população de Cisnes Negros (Cygnus atratus), mantida nos lagos da FPZSP, visto que essa população tem contato com as seguintes aves migrantes que visitam a FPZSP todos os anos: irerês (Dendrocygna viduata), marreca caneleira (Dendrocygna bicolor) e marreca asa de seda (Amazoneta brasiliensis). Assim, foram colhidos suabes de traquéia e cloaca de uma amostra capaz de detectar doença com prevalência estimada em 1% para um nível de confiança de 95%. Além disso, foi realizado um estudo retrospectivo (2001 a 2006) das principais causas de morte nessa população. As principais causas de mortalidade registradas em 184 registros analisados foram: desvio de tendão extensor tarso-metatarsiano (37, 20,1%), desnutrição (20, 10,9%), problemas hepáticos (17, 9,2%), traumas (15, 8,2%), problemas respiratórios (8, 4,3%), septicemias (6, 3,3%), intoxicações (5, 2,7%) e problemas gastrointestinais (3, 1,6%). Um terço das carcaças (62, 33,7%) foi encontrado em estado de putrefação. A taxa de mortalidade foi decrescente de 2001 a 2006 e apresentou sazonalidade, sendo maior entre os meses de novembro a maio. No momento das coletas, não houve nenhuma evidência clínica ou laboratorial da presença dos seguintes agentes: Pasteurella multocida., Salmonella sp., Chlamydophila psittaci, Orthomixovírus (Influenza Aviária), Paramixovirus (Doença de Newcastle) e Coronavirus (Bronquite Infecciosa). / Waterfowls housed in ponds of zoos and parks are under constant risk of exposure to pathogens of migratory birds that visit these places every year. Some of them involving zoo animals and humans. The spread of particular diseases may also become a serious threat for domestic poultry. So, surveillance, focused in early detection of some diseases, can be an interesting tool to do risk management. The goal of the present work was to search the presence of some select pathogens in the captive black swan population (Cygnus atratus) present in the ponds of the Fundação Parque Zoológico de São Paulo (FPZSP), because these animals have contact with the following free-living waterfowls: white-faced whistling-duck (Dendrocygna viduata), fulvous whistling-duck (Dendrocygna bicolor) e brasilian teal (Amazoneta brasiliensis). Swabs of trachea and cloaca were sampled from 239 animals, the sample size required for detecting disease present in at least 1% of the animals (CI = 95%). Moreover, a retrospective study was done about the causes of death to the period from 2001 to 2006. The mainly causes of black swan death in FPZSP were: slipped tendon (37/184, 20,1%), malnutrition (20/184, 10,9%), hepatic problem (17/184, 9,2%), trauma (15/184, 8,2%), respiratory problem (8/184, 4,3%), septicemias (6/184, 3,3%), intoxication (5/184, 2,7%) e gastro-intestinal problems(3/184, 1,6%). One third of the carcass (62/184, 33,7%) was in autolysis. The mortality presented peaks of occurrence from november to may and a decreasing trend from 2001 to 2006. At the moment of the sampling, there was no clinical or laboratorial evidence of the infection by the following pathogens: Pasteurella multocida., Salmonella sp., Chlamydophila psittaci, Orthomixovírus (Avian Influenza), Paramixovirus (Newcastle Disease) e Coronavirus (Infectious Bronchitis).

For migrant birds, the non-breeding season can greatly influence survival and future reproductive success. Knowledge of annual and overwinter survival, the degree of site fidelity and habitat use in the non-breeding season, migration ecology, routes and stopovers, and whether these differ with age or sex is fundamental to understanding population dynamics, vulnerability to anthropogenic habitat degradation, and consequently for understanding the severe widespread declines of migrant bird species. The degree to which a migrant is a winter specialist or generalist is likely to be central to understanding population dynamics. I studied survival rates and the wintering and migration ecology of a declining Palearctic migrant, the whinchat Saxicola rubetra, wintering in West Africa, to establish how the non-breeding season may influence migrant population dynamics. Whinchats were extremely site faithful to both within and between years, holding distinct winter territories and returning to those territories in subsequent winters, despite the opportunity to relocate. Overwinter survival was very high and annual survival was comparable to or higher than that reported on the breeding grounds. Because our power to detect resident and dispersing birds was high, survival rates likely estimated true survival well. Habitat characteristics varied widely across territories and territories were smaller if more perching shrubs and maize were present. Most individuals showed a tolerance or even preference for human modified habitats. Some individuals may have multiple wintering sites. There was no evidence of dominance-based habitat occupancy or any differences in winter ecology, site fidelity, survival and most aspects of migratory behaviour between age and sex classes. Migratory connectivity occurred only on a large-scale and individual migratory behaviour was also varied. Fundamentally, the results suggest a generalist strategy in the non-breeding season within their wintering habitat of open savannah, most likely as an adaption to stochastic site selection within the wintering range for juveniles undertaking their first migration plus changing and unpredictable conditions both within and between years. Consequently, wintering conditions may not significantly limit whinchat populations and mortality is probably highest during active migration. Notably, non-specialist migrants such as whinchats may have some resilience at the population-level to the increasing anthropogenic habitat modification occurring in Africa, suggesting that conditions during migration and in Europe may be driving declines; yet establishing the currently unknown thresholds of any resilience is likely to be fundamental for the future conservation migrants.

abstract: Avian influenzas are zoonoses, or pathogens borne by wildlife and livestock that can also infect people. In recent decades, and especially since the emergence of highly pathogenic avian influenza (HPAI) H5N1 in 1996, these diseases have become a significant threat to animal and public health across the world. HPAI H5N1 has caused severe damage to poultry populations, killing, or prompting the culling of, millions of birds in Asia, Africa, and Europe. It has also infected hundreds of people, with a mortality rate of approximately 50%. This dissertation focuses on the ecological and socioeconomic drivers of avian influenza risk, particularly in China, the most populous country to be infected. Among the most significant ecological risk factors are landscapes that serve as “mixing zones” for wild waterfowl and poultry, such as rice paddy, and nearby lakes and wetlands that are important breeding and wintering habitats for wild birds. Poultry outbreaks often involve cross infections between wild and domesticated birds. At the international level, trade in live poultry can spread the disease, especially if the imports are from countries not party to trade agreements with well-developed biosecurity standards. However, these risks can be mitigated in a number of ways. Protected habitats, such as Ramsar wetlands, can segregate wild bird and poultry populations, thereby lowering the chance of interspecies transmission. The industrialization of poultry production, while not without ethical and public health problems, can also be risk-reducing by causing wild-domestic segregation and allowing for the more efficient application of surveillance, vaccination, and other biosecurity measures. Disease surveillance is effective at preventing the spread of avian influenza, including across international borders. Economic modernization in general, as reflected in rising per-capita GDP, appears to mitigate avian influenza risks at both the national and sub-national levels. Poultry vaccination has been effective in many cases, but is an incomplete solution because of the practical difficulties of sustained and widespread implementation. The other popular approach to avian influenza control is culling, which can be highly expensive and raise ethical concerns about large-scale animal slaughter. Therefore, it is more economically efficient, and may even be more ethical, to target the socio-ecological drivers of avian influenza risks, including by implementing the policies discussed here. / Dissertation/Thesis / Doctoral Dissertation Biology 2018

Anseriformes mantidos em lagos de zôos e parques estão sob constante risco de exposição às doenças presentes nas populações de aves migratórias, que dividem com eles o mesmo local durante um determinado período todos os anos. São doenças que podem ter implicações para as aves cativas, para a população humana que tem contato com essas aves e para os plantéis de produção. Assim, ações de vigilância, com o objetivo de detectar rapidamente determinadas doenças, representam alternativas interessantes para se fazer gestão de risco. O objetivo do presente estudo foi pesquisar a presença de agentes etiológicos selecionados na população de Cisnes Negros (Cygnus atratus), mantida nos lagos da FPZSP, visto que essa população tem contato com as seguintes aves migrantes que visitam a FPZSP todos os anos: irerês (Dendrocygna viduata), marreca caneleira (Dendrocygna bicolor) e marreca asa de seda (Amazoneta brasiliensis). Assim, foram colhidos suabes de traquéia e cloaca de uma amostra capaz de detectar doença com prevalência estimada em 1% para um nível de confiança de 95%. Além disso, foi realizado um estudo retrospectivo (2001 a 2006) das principais causas de morte nessa população. As principais causas de mortalidade registradas em 184 registros analisados foram: desvio de tendão extensor tarso-metatarsiano (37, 20,1%), desnutrição (20, 10,9%), problemas hepáticos (17, 9,2%), traumas (15, 8,2%), problemas respiratórios (8, 4,3%), septicemias (6, 3,3%), intoxicações (5, 2,7%) e problemas gastrointestinais (3, 1,6%). Um terço das carcaças (62, 33,7%) foi encontrado em estado de putrefação. A taxa de mortalidade foi decrescente de 2001 a 2006 e apresentou sazonalidade, sendo maior entre os meses de novembro a maio. No momento das coletas, não houve nenhuma evidência clínica ou laboratorial da presença dos seguintes agentes: Pasteurella multocida., Salmonella sp., Chlamydophila psittaci, Orthomixovírus (Influenza Aviária), Paramixovirus (Doença de Newcastle) e Coronavirus (Bronquite Infecciosa). / Waterfowls housed in ponds of zoos and parks are under constant risk of exposure to pathogens of migratory birds that visit these places every year. Some of them involving zoo animals and humans. The spread of particular diseases may also become a serious threat for domestic poultry. So, surveillance, focused in early detection of some diseases, can be an interesting tool to do risk management. The goal of the present work was to search the presence of some select pathogens in the captive black swan population (Cygnus atratus) present in the ponds of the Fundação Parque Zoológico de São Paulo (FPZSP), because these animals have contact with the following free-living waterfowls: white-faced whistling-duck (Dendrocygna viduata), fulvous whistling-duck (Dendrocygna bicolor) e brasilian teal (Amazoneta brasiliensis). Swabs of trachea and cloaca were sampled from 239 animals, the sample size required for detecting disease present in at least 1% of the animals (CI = 95%). Moreover, a retrospective study was done about the causes of death to the period from 2001 to 2006. The mainly causes of black swan death in FPZSP were: slipped tendon (37/184, 20,1%), malnutrition (20/184, 10,9%), hepatic problem (17/184, 9,2%), trauma (15/184, 8,2%), respiratory problem (8/184, 4,3%), septicemias (6/184, 3,3%), intoxication (5/184, 2,7%) e gastro-intestinal problems(3/184, 1,6%). One third of the carcass (62/184, 33,7%) was in autolysis. The mortality presented peaks of occurrence from november to may and a decreasing trend from 2001 to 2006. At the moment of the sampling, there was no clinical or laboratorial evidence of the infection by the following pathogens: Pasteurella multocida., Salmonella sp., Chlamydophila psittaci, Orthomixovírus (Avian Influenza), Paramixovirus (Newcastle Disease) e Coronavirus (Infectious Bronchitis).

Master of Science / Department of Biology / Alice Boyle / Species extinctions over the past two centuries have mainly been caused by habitat destruction. Landscape change typically reduces habitat area, and can fragment contiguous habitat into remnant patches that are more subject to anthropogenic disturbance. Furthermore, changes in the landscape matrix and land-use intensification within remaining natural areas can reduce habitat quality and exacerbate the consequences of habitat loss and fragmentation. Accordingly, wildlife conservation requires an understanding of how landscape structure influences habitat selection. However, most studies of habitat selection are conducted at fine spatial scales and fail to account for landscape context. Temperate grasslands are a critically endangered biome, and remaining prairies are threatened by woody encroachment and disruptions to historic fire-grazing regimes. Here, I investigated the effects of habitat area, fragmentation, woody cover, and rangeland management on habitat selection by two species of declining grassland-obligate sparrows: Henslow’s Sparrows (Ammodramus henslowii) and Grasshopper Sparrows (A. savannarum). I conducted >10,000 bird surveys at sites located throughout eastern Kansas, home to North America’s largest remaining tracts of tallgrass prairie, during the breeding seasons of 2015 and 2016. I assessed the relative importance of different landscape attributes in determining occurrence and within-season site-fidelity of Henslow’s Sparrows using dynamic occupancy models. The species was rare, inhabited <1% of sites, and appeared and disappeared from sites within and between seasons. Henslow’s Sparrows only settled in unburned prairie early in spring, but later in the season, inhabited burned areas and responded to landscape structure at larger scales (50-ha area early in spring vs. 200-ha during mid-season). Sparrows usually settled in unfragmented prairie, strongly favored Conservation Reserve Program (CRP) fields embedded within rangeland, avoided trees, and disappeared from hayfields after mowing. Having identified fragmentation as an important determinant of Henslow’s Sparrow occurrence, I used N-mixture models to test whether abundance of the more common Grasshopper Sparrow was driven by total habitat area or core habitat area (i.e. grasslands >60 m from woodlands, croplands, or urbanized areas). Among 50-ha landscapes containing the same total grassland area, sparrows favored landscapes with more core habitat, and like Henslow’s Sparrows, avoided trees; in landscapes containing ~50–70% grassland, abundance decreased more than threefold if half the grassland area was near an edge, and the landscape contained trees. Effective conservation requires ensuring that habitat is suitable at spatial scales larger than that of the territory or home range. Protecting prairie remnants from agricultural conversion and woody encroachment, promoting CRP enrollment, and maintaining portions of undisturbed prairie in working rangelands each year are critical to protecting threatened grassland species. Both Henslow’s Sparrows and Grasshopper Sparrows were influenced by habitat fragmentation, underscoring the importance of landscape features in driving habitat selection by migratory birds. As habitat loss threatens animal populations worldwide, conservation efforts focused on protecting and restoring core habitat could help mitigate declines of sensitive species.

No description available.