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Deregulated expression of MYC oncoproteins is a driving event in many human cancers. Therefore, understanding and targeting MYC protein-driven mechanisms in tumor biology remain a major challenge. Oncogenic transcription in MYCN-amplified neuroblastoma leads to the formation of the MYCN-BRCA1-USP11 complex that terminates transcription by evicting stalling RNAPII from chromatin. This reduces cellular stress and allows reinitiation of new rounds of transcription. Basically, tumors with amplified MYC genes have a high demand on well orchestration of transcriptional processes-dependent and independent from MYC proteins functions in gene regulation. To date, the cooperation between promoter-proximal termination and transcriptional elongation in cancer cells remains still incomplete in its understanding. In this study the putative role of the dubiquitinase Ubiquitin Specific Protease 11 (USP11) in transcription regulation was further investigated. First, several USP11 interaction partners involved in transcriptional regulation in neuroblastoma cancer cells were identified. In particular, the transcription elongation factor A like 1 (TCEAL1) protein, which assists USP11 to engage protein-protein interactions in a MYCN-dependent manner, was characterized. The data clearly show that TCEAL1 acts as a pro-transcriptional factor for RNA polymerase II (RNAPII)-medi- ated transcription. In detail, TCEAL1 controls the transcription factor S-II (TFIIS), a factor that assists RNAPII to escape from paused sites. The findings claim that TCEAL1 outcompetes the transcription elongation factor TFIIS in a non-catalytic manner on chromatin of highly expressed genes. This is reasoned by the need regulating TFIIS function in transcription. TCEAL1 equili- brates excessive backtracking and premature termination of transcription caused by TFIIS. Collectively, the work shed light on the stoichiometric control of TFIIS demand in transcriptional regulation via the USP11-TCEAL1-USP7 complex. This complex protects RNAPII from TFIIS-mediated termination helping to regulate productive transcription of highly active genes in neuroblastoma. / Die deregulierte Expression von MYC Onkoproteinen ist ein zentrales Event in vielen huma-nen Krebsarten. Aus diesem Grund sind das Verständnis und die gezielte Bekämpfung MYC-getriebener Mechanismen in der Tumorbiologie nach wie vor eine große Herausforderung. In MYCN-amplifizierten Neuroblastomen führt eine übermäßig hohe Transkriptionsrate zur stress-bedingten Rekrutierung des MYCN-BRCA1-USP11-Komplexes. Dieser Komplex be-endet vorzeitig die Transkription, indem er RNAPII Moleküle vom Chromatin wirft. Durch diesen Mechanismus wird zellulärer Stress reduziert und ermöglicht dadurch einen erneuten Start der Transkription. Grundsätzlich stellen Tumoren mit einer Amplifikation von einem der MYC Proteine hohe Anforderungen an eine feine Abstimmung der einzelnen Schritte in der Transkription. Dies ist sowohl abhängig als auch unabhängig von den bereits beschriebe-nen Funktionen der MYC-Proteine in der Genregulation. Bis heute ist das Zusammenspiel zwischen promoter-proximaler Termination und transkriptioneller Elongation noch nicht vollständig aufgeklärt. In dieser Studie wurde eine potenzielle Rolle von USP11 in der Regulation der Transkription weitergehend untersucht. Zunächst wurden mehrere Interaktionspartner von USP11, die an der Regulation der Transkription in Neuroblastom Krebszellen beteiligt sind, identifiziert. Es wurde insbesondere das Transcription Elongation Factor A Like 1 (TCEAL1) Protein charak-terisiert. Dieses Protein unterstützt USP11 dabei, Protein-Protein-Interaktionen MYCN-vermittelt einzugehen. Die Daten zeigen, dass TCEAL1 als pro-transkriptioneller Faktor für die RNA-Polymerase II (RNAPII) -vermittelte Transkription fungiert. Genauer, TCEAL1 kontrolliert den Transkriptionsfaktor S-II (TFIIS), einen Faktor, der der RNAPII dabei hilft, die Transkription nach einem kurzen Pausieren („pausing“) fortzusetzen. Die Ergebnisse zei-gen, dass TCEAL1 den Elongationsfaktor TFIIS auf nicht-katalytische Weise von dem Chromatin von hochexprimierten Genen verdrängt. Dies ist darin begründet, dass die Funkti-on von TFIIS bei der Transkription reguliert werden muss. TCEAL1 gleicht übermäßiges Zurückwandern der RNAPII und die vorzeitige Beendigung der Transkription, das durch TFIIS vermittelt wird, aus. Diese Arbeit gibt Aufschluss über die stöchiometrische Kontrolle des TFIIS-Bedarfs bei der Transkriptionsregulation durch den USP11-TCEAL1-USP7-Komplex. Dieser Komplex schützt die RNAPII vor der TFIIS-vermittelter Termination der Transkription und trägt zur Regulierung einer produktiven Transkription hochaktiver Gene im Neuroblastom bei.

Tobacco mosaic virus (TMV) infects all classes of tobacco (Nicotiana tabacum L.) and causes losses worldwide. The N gene is the most effective means of controlling TMV; however, this gene is associated with reduced yield and quality in flue-cured tobacco. The mode of inheritance of TMV resistance was determined in two tobacco introductions (TI) from N. tabacum germplasm, both of which produced a hypersensitive response when inoculated with TMV. Inheritance studies with TI 1504 and TI 1473 indicate that a single dominant gene controls resistance. The gene governing resistance in TI 1504 is allelic to the N gene in NC 567. The gene providing resistance in TI 1473 is not allelic to the N gene, providing a potentially new source of resistance. Currently, plant breeders must rely on the N gene. The N gene is used in the heterozygous state to help overcome poor agronomic effects associated with homozygous resistance; however, systemic movement of TMV is occasionally seen in resistant plants. A TMV susceptible inbred (K 326), a resistant inbred (NC 567), and three resistant hybrids (NC 297, RGH4, and Speight H2O) were inoculated with TMV at transplanting, layby, and topping using different inoculation methods. Plant parts were tested for viral presence and biological activity. Viral movement into all plant parts was observed in K 326. No systemic movement was evident in the plant parts of NC 567, while virus did move into the corollas, pistils, late season sucker growth, and roots of the resistant hybrids showing systemic necrosis. / Master of Science

This study explores the synthesis and reduction of some n-phenacylpyridines and is an investigation of various derivatives.

Tableau d’honneur de la Faculté des études supérieures et postdoctorales, 2001-2002 / Je commence par mon corps comme lieu de mémoire, de passages et de rites. Je commence par une relation de contact éveillée du mouvement entre les corps dans différentes situations de mise en espace. Ma pratique est donc fondée sur l'acte, l'expérience, et la mise en situation. À travers mes images contact, j'investigue une transitivité entre les corps, les choses et les sens. Dans cette transitivité, j'expérimente l'image en tant que sensation et durée. Mon mémoire intitulé Images-Contacts : expériences de transitivité est un exercice de réflexion éveillé par ma propre pratique. Je développe parallèlement des images et des actions liés au corps, aux objets et aux lieux. Je joins à ceux-ci des notes de vidéo, de journal, de descriptions de travail, de récits d'expériences. Les Images-Contacts sont donc des images singulières et plurielles, réelles et imaginaires, des images d'expériences concrètes, animées par un état de transitivité et par une relation de contact. Je renvoie profondément mes expériences à un rituel du corps. Elles me permettent d'imaginer d'autres corps, d'autres enveloppes, d'autres peaux, d'autres images-contacts ; d'autres formes changeantes et lieux passagers pour y habiter. / Québec Université Laval, Bibliothèque 2014

Tobacco-specific nitrosamines (TSNA) are carcinogenic constituents derived from alkaloids in tobacco. Researchers are actively exploring several avenues to reduce TSNA levels in tobacco products like moist snuff tobacco. The focus of the research presented within is the quantitative analysis of TSNA in tobacco, specifically N’-nitrosonornicotine (NNN), 4-(methylnitrosamino)-1(3-pyridyl)-1-butanone (NNK), N’-nitrosoanatabine (NAT), and N’-nitrosoanabasine (NAB). Tobacco alkaloids and nitrosamines in tobacco are currently analyzed by different instrumentation due to orders of magnitude difference in their concentrations, chromatographic separation challenges due to structural similarities, and similar mass fragmentation patterns. An analytical column using silica and 1,2-bis(siloxy)ethane hybrid particles of 1.7 µm size is the foundation of a chromatographic separation of NNN, NNK, NAT, NAB, nicotine, nornicotine, anatabine, and anabasine. This is the first rapid and robust quantitative method for the TSNA and their alkaloid precursors using high pH mobile phase conditions with ultra-performance liquid chromatography tandem mass spectrometry (UPLC-MS/MS). The suitability of the method is demonstrated by its application to the analysis of reference tobacco materials for cigarettes and moist snuff. In addition, a novel TSNA analytical method was developed using TSNA-specific molecularly imprinted polymers (MIP) as the selective extraction element from tobacco extract. The affinity mechanisms between MIP and TSNA were found to have extensive cross-reactivity to structurally similar alkaloids present in tobacco extract. TSNA-specific MIP was demonstrated to have stronger retention for the alkaloids than for the TSNA substrate. The MIP-TSNA interaction was optimized to create the first analytical method to quantify underivatized NNN and NNK from tobacco extracts by HPLC-UV.

Mag?ster en ciencias m?dicas menci?n gen?tica

Fatty acid amides are an emerging family of bioactive lipids that consists of N-acylethanolamines, N-acylarylalkylamides, N-acylglycines, N-acyl amino acids, N-monoacylpolyamides, and primary fatty acid amides. Short chain fatty acid amides are products of inactivated biogenic amines such as dopamine, histamine, octopamine, and serotonin, whereas long chain fatty acid amides have been implicated in a number of physiological process such as the perception and inhibition of chronic pain through binding to their specific receptors. The most famous; therefore, the most studied long chain fatty acid amide is anandamide or also known as N-arachidonylethanolamine. The biosynthesis of anandamide is well defined; however, other long-chain fatty acid amides, such as the N-acyldopamines, N-acylserotonins, N-acylglycines, N-acyl amino acids, and primary fatty acid amides have remained elusive to date. Understanding the complete biosynthetic pathway for these cell signaling lipids, may yield new exciting molecular targets for human health and disease. Discovery of the long-chain fatty acid amide biosynthetic enzymes has proven to be challenging due to the low biologic abundance of the respective metabolites found in organisms, the interconnection of the pathways, and expense of using mammalian cells and/or organisms. This led to the transition of studying these metabolites and their respective biosynthetic enzymes in Drosophila melanogaster. D. melanogaster is an ideal system to study fatty acid amide biosynthesis because the respective metabolites have been identified, the cost of maintaining the organism is relatively low, and genetic manipulation (RNAi) is universally available. This dissertation is dedicated to defining enzymes involved in D. melanogaster N-acylarylalkyamide biosynthesis. The biologically relevant long-chain N-acylarylalkylamides are comprised of long-chain N-acyldopamines and N-acylserotonins. Very little is known for how these potent cell signaling lipids are biosynthesized in the cell. One possible route is the N -acylation of the respective biogenic amine by an N-acyltransferase enzyme. An enzyme known to catalyze this chemistry is arylalkylamine N-acetyltransferase (AANAT), which catalyzes the formation of N-acetylarylalkylamides from acetyl CoA and the corresponding arylalkylamide. The N-acetylation of biogenic amines is a critical step in Drosophila melanogaster for the inactivation of amine neurotransmitters, sclerotization of the cuticle, and to serve as the penultimate intermediate in the biosynthesis of melatonin. Two AANAT(L) enzymes has been previously evaluated in D. melanogaster and six other putative AANATL enzymes have identified in the fly genome. One AANAT is expressed as two biologically relevant isoforms, AANAT variant A (AANATA) and AANAT variant B (AANATB), where AANATA differs from AANATB by the truncation of 35 amino acids on the N-terminus. The other AANATL enzyme to be previously studied is AANATL2, which was found to catalyze the formation of N-acetyltryptamine from acetyl CoA and tryptamine. Herein, we expressed six AANAT(L) enzymes (AANATA and AANATB, AANATL2, AANATL3, AANATL7, and AANATL8) and sought to define the acyl-CoA and amine substrates for each enzyme. To accomplish this, we developed an activity based screening assay to define acyl-CoA and amine substrates for AANATL2, AANATL3, AANATL7, and AANATL8. Following this work, we defined the acyl-CoA and amine substrate specificity for AANATA, AANATL2, AANATL3, and AANATL7. We have identified acetyl CoA and arylalkylamines as substrates for AANATA, AANATL2, and AANATL3; whereas AANATL7 acetylates histamine and arylalkylamines. AANATL2 was additionally shown to catalyze the formation of long-chain N-acyldopamines and N-acylserotonins. Following these important set of results, we solved the kinetic mechanism for AANATA, AANATL2, and AANATL7 in which these enzymes were shown to catalyze the formation of N-acylarylalkylamides by an ordered sequential mechanism where the acyl-CoA substrate binds first followed by the corresponding amine substrate. Finally, we evaluated the function of structural amino acids on regulating catalysis, structural features of substrates that effect binding and/or catalysis, and generated data leading to a proposed chemical mechanism by means of pH-activity profiles and site-directed mutagenesis of prospective catalytic residues.

The vast variety of long-chain fatty acid amides identified in biological systems is intriguing. The general structure of a fatty acid amide is R-CO-NH-X, where R is an alkyl group and X is derived from an immense variety of biogenic amines. Although structurally simple, the bioactivities of these molecules as signaling lipids are very diverse and have just recently begun to emerge in the literature. Interest in the long-chain fatty acid amides dramatically increased following the identification and characterization of one specific N-acylethanolamine, N-arachidonoylethanolamine (anandamide), as the endogenous ligand for the cannabinoid receptors in the mammalian brain. Since this discovery, the details of N-acylethanolamine metabolism have been elucidated. However, a lesser extent of progress has been made in the last twenty years to identify and study the non-N-acylethanolamine long-chain fatty acid amides. The focus of this dissertation is the elucidation of the biosynthetic pathways for long-chain fatty acid amides, including N-acylglycines, primary fatty acid amides, N-acylarylalkylamides, and N-acylethanolamines. The details of long-chain fatty acid amide metabolism will lead to the determination of possible therapeutic targets. We identified mammalian glycine N-acyltransferase like 3 as the enzyme that catalyzes the formation of long-chain N-acylglycines in mouse N18TG2 neuoblastoma cells, identified and quantified a panel of long-chain fatty acid amides in Drosophila melanogaster extracts by LC/QTOF-MS, established Drosophila melanogaster as a model system to study long-chain fatty acid amide metabolism, and identified arylalkylamine N-acyltransferase like 2 as the enzyme that catalyzes the formation of long-chain N-acylserotonins and N-acyldopamines in Drosophila melanogaster.

Functional water-soluble polymers find applications in a variety of fields including waste-water treatment, pharmaceuticals, cosmetics, drug delivery, and hygiene. Despite the increased demand for these products, understanding of their synthesis by free-radical aqueous-phase polymerization has lagged behind that of polymers produced in organic solvents. In this doctoral work, the free-radical batch and semibatch aqueous-phase polymerization of N-vinylpyrrolidone (NVP), N-vinylformamide (NVF), N-vinylimidazole (NVI) and quaternized vinylimidazole (QVI), as well as NVP polymerized in n-butanol, has been studied. Kinetic models are developed to describe monomer conversion and polymer molecular weight (MW) behaviour of these systems. The expressions developed from independent pulsed-laser studies for propagation (kp) and termination (kt) rate coefficients, including their variation with monomer concentration and conversion, are shown to provide an excellent description of aqueous-phase NVP polymerization. Polymerization of NVP in butanol and of NVF in water are well-represented by the base NVP model, with differences in polymerization rate and polymer MWs simply accounted for by the differences in kp for the systems, indicating that the kt behaviour must be quite similar. The NVI/QVI study demonstrates the importance of a pH-dependent degradative addition reaction to monomer for NVI, with polymerization behaviour identical to that of QVI for pH 1, an effect captured in the model developed to describe the system. The aqueous-phase copolymerization of NVP and NVF was also studied, and reactivity ratios were determined to be very close to unity. This information was combined with the kp and kt expressions used to describe NVP and NVF homopolymerizations, with no other additional parameters required to model the copolymerization rate, copolymer composition and copolymer MW. This result demonstrates that the improved homopolymerization knowledge of these water-soluble monomers can be easily extended to understand their behaviour in copolymerization. / Thesis (Ph.D, Chemical Engineering) -- Queen's University, 2011-12-21 16:05:14.904