The purpose of this review is to compile preclinical and clinical results on phthalocyanines (Pcs) as photosensitizers (PS) for Photodynamic Therapy (PDT) and contrast agents for fluorescence imaging. Indeed, Pcs are excellent candidates in these fields due to their strong absorbance in the NIR region and high chemical and photo-stability. In particular, this is mostly relevant for their in vivo activation in deeper tissular regions. However, most Pcs present two major limitations, i.e., a strong tendency to aggregate and a low water-solubility. In order to overcome these issues, both chemical tuning and pharmaceutical formulation combined with tumor targeting strategies were applied. These aspects will be developed in this review for the most extensively studied Pcs during the last 25 years, i.e., aluminium-, zinc- and silicon-based Pcs.

Small molecule organic dyes with absorption and emission in the near infrared region (NIR) attracted much attention for various applications such as dye sensitized solar cells, fluorescent guided surgery, stimuli responsive bioimaging and photodynamic therapy. Dyes with high absorption and emission in the NIR region are beneficial for stimuli responsive bioimaging due to the deeper penetration of NIR light, less cell damage, high resolution, and low background autofluorescence from biomolecules. Of the many small molecule dyes, xanthene-based dyes exhibit outstanding photophysical properties and good stimuli response for use in bioimaging applications. However, absorption and emission of the xanthene dyes lie in the visible region, which limit their applications in cellular imaging. Many of the NIR dyes have very poor fluorescence; consequently, an alternative approach to fluorescent imaging is photoacoustic imaging that uses sound waves to generate pictures of deep tissues. In this dissertation, we discuss the utility of xanthene based NIR dyes as photoacoustic imaging contrast agents for multiplex imaging and deep tissue nitric oxide sensing in the drug-induced liver injury. Chapter I discuss the fundamentals of fluorescence and photoacoustic imaging, background of the xanthene dyes and other fluorescent dyes, and the design strategies to develop NIR xanthene-based dyes. Chapter II is based on our approach to the design and synthesis of NIR xanthene-based dyes by C-H bond functionalization, with the first example being Rhodindolizine, which absorb and emits in NIR II or short-wave infrared (SWIR) region. In chapter III, we describe the design and synthesis of thienylpiperidine xanthene-based NIR and shortwave-infrared (SWIR) dyes for the photoacoustic imaging. One dye in particular (XanthCR-880) boasts a strong PA signal at 880 nm with good biological compatibility and photostability, yields multiplexed imaging with an aza-BODIPY reference dye, and is detected at a depth of 4 cm. In chapter IV, we report a series of SWIR dyes based on a dibenzazepine donor conjugated to thiophene (SCR-1, SCR-4), thienothiophene (SCR-2, SCR-5), and bithiophene (SCR-3, SCR-6). We leverage the fact that SCR-1 undergoes a bathochromic shift when aggregated to develop a ratiometric nanoparticle for nitric oxide (NO) (rNP-NO). rNP-NO was used to successfully perform in vivo studies to visualize pathological levels of nitric oxide in a drug-induced liver injury model via deep tissue SWIR photoacoustic (PA) imaging. Chapter V describes another series of xanthene-based dyes with a thiophene ᴫ spacer and several different donors. UV-Vis absorption studies were performed after converting the dyes to the opened form with trifluoracetic acid. These novel XanthCR-TD dyes exhibit absorption maxima in NIR I region from 700 - 900 nm.

Organic open-shell materials, which are responsive to external stimuli; such as light, electronic field, magnetic field, etc., are subject to intensive studies in recent years for their potential application in the field of organic solar cells, semiconductors, supercapacitors, singletission, non-linear optical (NLO), spintronics, and magnetic materials. As the materials with an open-shell diradical (two unpaired electrons) or polyradical (multiple unpaired electrons) character have a significant promise for next-generation optoelectronics, magnetic, and spintronic devices, it is of paramount importance to design suitable materials with tunable electronic properties. Also, a proper understanding of the molecular topology with electro-magnetic properties and correlate with quantum functionalities can move forward the field of organic photovoltaics and optoelectronics. Here, we show that controlling the radical character based on the different molecular scaffolds can lead to materials from closed-shell (all electrons are paired) low-spin (singlet state) to intermediate open-shell (multi)radical state to high-spin (triplet state) ground-state in the pristine form. In this regard, several organic donoreptor (D-A) polymeric and small molecular systems are designed and characterized. We find that the diradical character is ubiquitous in the narrow bandgap organic materials. Based on this design rule, we have reported open-shell dyes for dye-sensitized solar cells (DSCs), which show significantly red-shifted absorption in the NIR than the closed-shell counterpart dyes. Our work on the alternating D-A polymers indicate stabilization of the high-spin triplet ground-state in the neutral form, not reported for D-A type polymers. A significant delocalization of the unpaired electrons provides thermodynamic stability of the polymer, which when used in supercapacitors, a best-in-class energy density, and a long cycle life are observed. Also, we find that the spin topology can be modulated by careful selection of molecular scaffold in the extended pi-conjugated D-A polymers. Furthermore, our study on D-A macrocycles indicates that the antiferromagnetic (AFM) couplings between the unpaired electrons can be tuned by thiophene pi-spacer, developing a record polyradical character in the macromolecular systems.

A novel approach of using near infrared region (NIR) dyes is applied to elucidate the binding interaction between human serum albumin (HSA) and mangiferin (MGF). HSA is a blood carrier protein used for drug delivery, while mangiferin is a natural polyphenol found in mangoes that possesses numerous beneficial health properties. The NIR dyes are used as a probe to investigate MGF binding interaction with HSA via monitoring fluorescence of Trp-214 residue. Molecular modeling is used for docking and semi-empirical analysis. The investigation of the binding interaction between Trp-214 and MGF is significant, for it may offer broader pharmacological insight and applications for the polyphenol. Mangiferin in proposed to bind with a 2:1 stoichiometric ratio with HSA to the Trp-214 residue in subdomain IIA and another possible binding site to be determined in future studies. Spectral changes suggest a stabilized protein conformation upon mangiferin binding with the addition of NIR dye E-06 and MHI-06.

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