<p>In the maximum solution equation problem a collection of equations are given over some algebraic structure. The objective is to find an assignment to the variables in the equations such that all equations are satisfied and the sum of the variables is maximised. We give tight approximability results for the maximum solution equation problem when the equations are given over finite abelian groups. We also prove that the weighted and unweighted versions of this problem have asymptotically equal approximability thresholds.</p><p>Furthermore, we show that the problem is equally hard to solve as the general problem even if each equation is restricted to contain at most three variables and solvable in polynomial time if the equations are restricted to contain at most two variables each. All of our results also hold for the generalised version of maximum solution equation where the elements of the group are mapped arbitrarily to non-negative integers in the objective function.</p>

<p>This thesis presents exact means to solve a family of NP-hard problems. Starting with the well-studied Exact Satisfiability problem (XSAT) parents, siblings and daughters are derived and studied, each with interesting practical and theoretical properties. While developing exact algorithms to solve the problems, we gain new insights into their structure and mutual similarities and differences.</p><p>Given a Boolean formula in CNF, the XSAT problem asks for an assignment to the variables such that each clause contains exactly one true literal. For this problem we present an <em>O</em>(1.1730ⁿ) time algorithm, where n is the number of variables. XSAT is a special case of the General Exact Satisfiability problem which asks for an assignment such that in each clause exactly i literals be true. For this problem we present an algorithm which runs in <em>O</em>(2^(1-<em>ε</em>⁾<em>n</em>) time, with 0 < <em>ε</em> < 1 for every fixed <em>i</em>; for <em>i</em>=2, 3 and 4 we have running times in <em>O</em>(1.4511ⁿ), <em>O</em>(1.6214ⁿ) and <em>O</em>(1.6848ⁿ) respectively.</p><p>For the counting problems we present an O(1.2190ⁿ) time algorithm which counts the number of models for an XSAT instance. We also present algorithms for #2SAT<em>w</em><em> </em>and #3SAT<em>w</em><em>,</em> two well studied Boolean problems. The algorithms have running times in O(1.2561ⁿ) and <em>O</em>(1.6737ⁿ) respectively.</p><p>Finally we study optimisation problems: As a variant of the Maximum Exact Satisfiability problem, consider the problem of finding an assignment exactly satisfying a maximum number of clauses while the rest are left with no true literal. This problem is reducible to #2SAT<em>w</em> without the addition of new variables and thus is solvable in time <em>O</em>(1.2561ⁿ). Another interesting optimisation problem is to find two XSAT models which differ in as many variables as possible. This problem is shown to be solvable in O(1.8348ⁿ) time.</p>

This thesis presents exact means to solve a family of NP-hard problems. Starting with the well-studied Exact Satisfiability problem (XSAT) parents, siblings and daughters are derived and studied, each with interesting practical and theoretical properties. While developing exact algorithms to solve the problems, we gain new insights into their structure and mutual similarities and differences. Given a Boolean formula in CNF, the XSAT problem asks for an assignment to the variables such that each clause contains exactly one true literal. For this problem we present an O(1.1730n) time algorithm, where n is the number of variables. XSAT is a special case of the General Exact Satisfiability problem which asks for an assignment such that in each clause exactly i literals be true. For this problem we present an algorithm which runs in O(2(1-ε) n) time, with 0 &lt; ε &lt; 1 for every fixed i; for i=2, 3 and 4 we have running times in O(1.4511n), O(1.6214n) and O(1.6848n) respectively. For the counting problems we present an O(1.2190n) time algorithm which counts the number of models for an XSAT instance. We also present algorithms for #2SATw and #3SATw, two well studied Boolean problems. The algorithms have running times in O(1.2561n) and O(1.6737n) respectively. Finally we study optimisation problems: As a variant of the Maximum Exact Satisfiability problem, consider the problem of finding an assignment exactly satisfying a maximum number of clauses while the rest are left with no true literal. This problem is reducible to #2SATw without the addition of new variables and thus is solvable in time O(1.2561n). Another interesting optimisation problem is to find two XSAT models which differ in as many variables as possible. This problem is shown to be solvable in O(1.8348n) time.

Geometric covering problems have always been of focus in computer scientific research. The generic geometric covering problem asks to cover a set S of n objects with another set of objects whose cardinality is minimum, in a geometric setting. Many versions of geometric cover have been studied in detail, one of which is line cover: Given a set of points in the plane, find the minimum number of lines to cover them. In Euclidean space Rm, this problem is known as Hyperplane Cover, where lines are replaced by affine hyperplanes bounded by dimension d. Line cover is NP-hard, so is its hyperplane analogue. Our thesis focuses on few extensions of hyperplane cover and line cover. One of the techniques used to study NP-hard problems is Fixed Parameter Tractability (FPT), where, in addition to input size, a parameter k is provided for input instance. We ask to solve the problem with respect to k, such that the running time is a function in both n and k, strictly polynomial in n, while the exponential component is limited to k. In this thesis, we study FPT and parameterized complexity theory, the theory of classifying hard problems involving a parameter k. We focus on two new geometric covering problems: covering a set of points in the plane with conics (conic cover) and covering a set of points with strips or fat lines of given width in the plane (fat line cover). A conic is a non-degenerate curve of degree two in the plane. A fat line is defined as a strip of finite width w. In this dissertation, we focus on the parameterized versions of these two problems, where, we are asked to cover the set of points with k conics or k fat lines. We use the existing techniques of FPT algorithms, kernelization and approximation algorithms to study these problems. We do a comprehensive study of these problems, starting with NP-hardness results to studying their parameterized hardness in terms of parameter k. We show that conic cover is fixed parameter tractable, and give an algorithm of running time O∗ ((k/1.38)^4k), where, O∗ implies that the running time is some polynomial in input size. Utilizing special properties of a parabola, we are able to achieve a faster algorithm and show a running time of O∗ ((k/1.15)^3k). For fat line cover, first we establish its NP-hardness, then we explore algorithmic possibilities with respect to parameterized complexity theory. We show W [1]-hardness of fat line cover with respect to the number of fat lines, by showing a parameterized reduction from the problem of stabbing axis-parallel squares in the plane. A parameterized reduction is an algorithm which transforms an instance of one parameterized problem into an instance of another parameterized problem using a FPT-algorithm. In addition, we show that some restricted versions of fat line cover are also W [1]-hard. Further, in this thesis, we explore a restricted version of fat line cover, where the set of points are integer coordinates and allow only axis-parallel lines to cover them. We show that the problem is still NP-hard. We also show that this version is fixed parameter tractable having a kernel size of O (k^2) and give a FPT-algorithm with a running time of O∗ (3^k). Finally, we conclude our study on this problem by giving an approximation algorithm for this version having a constant approximation ratio 2.

In this work we formalize a new natural objective (or cost) function for bi-clustering - Monochromatic bi-clustering. Our objective function is suitable for detecting meaningful homogenous clusters based on categorical valued input matrices. Such problems have arisen recently in systems biology where researchers have inferred functional classifications of biological agents based on their pairwise interactions. We analyze the computational complexity of the resulting optimization problems. We show that finding optimal solutions is NP-hard and complement this result by introducing a polynomial time approximation algorithm for this bi-clustering task. This is the first positive approximation guarantee for bi-clustering algorithms. We also show that bi-clustering with our objective function can be viewed as a generalization of correlation clustering.

In this work we formalize a new natural objective (or cost) function for bi-clustering - Monochromatic bi-clustering. Our objective function is suitable for detecting meaningful homogenous clusters based on categorical valued input matrices. Such problems have arisen recently in systems biology where researchers have inferred functional classifications of biological agents based on their pairwise interactions. We analyze the computational complexity of the resulting optimization problems. We show that finding optimal solutions is NP-hard and complement this result by introducing a polynomial time approximation algorithm for this bi-clustering task. This is the first positive approximation guarantee for bi-clustering algorithms. We also show that bi-clustering with our objective function can be viewed as a generalization of correlation clustering.

In the maximum solution equation problem a collection of equations are given over some algebraic structure. The objective is to find an assignment to the variables in the equations such that all equations are satisfied and the sum of the variables is maximised. We give tight approximability results for the maximum solution equation problem when the equations are given over finite abelian groups. We also prove that the weighted and unweighted versions of this problem have asymptotically equal approximability thresholds. Furthermore, we show that the problem is equally hard to solve as the general problem even if each equation is restricted to contain at most three variables and solvable in polynomial time if the equations are restricted to contain at most two variables each. All of our results also hold for the generalised version of maximum solution equation where the elements of the group are mapped arbitrarily to non-negative integers in the objective function.

This thesis is devoted to the outer and grounded string representations of graphs and their subclasses. A string representation of a graph is a set of strings (bounded continuous curves in a plane), where each string corresponds to one vertex of the graph. Two strings intersect each other if and only if the two corresponding vertices are adjacent in the original graph. An outer string graph is a graph with a string representation where strings are realized inside a disk and one endpoint of each string lies on the boundary of the disk. Similarly, in case of grounded string graphs the strings lie in a common half- plane with one endpoint of each string on the boundary of the half-plane. We give a summary of subclasses of grounded string graphs and proves several results about their mutual inclusions and separations. To prove those, we use an order-forcing lemma which can be used to force a particular order of the endpoints of the string on the boundary circle or boundary line. The second part of the thesis contains proof that recognition of outer string graphs is NP-hard. 1

This thesis considers the Two-Stage Vehicle Routing Problem (VRP) with Profits and Buffers, which generalizes various optimization problems that are relevant for practical applications, such as the Two-Machine Flow Shop with Buffers and the Orienteering Problem. Two optimization problems are considered for the Two-Stage VRP with Profits and Buffers, namely the minimization of total time while respecting a profit constraint and the maximization of total profit under a budget constraint. The former generalizes the makespan minimization problem for the Two-Machine Flow Shop with Buffers, whereas the latter is comparable to the problem of maximizing score in the Orienteering Problem. For the three problems, a theoretical analysis is performed regarding computational complexity, existence of optimal permutation schedules (where all vehicles traverse the same nodes in the same order) and potential gaps in attainable solution quality between permutation schedules and non-permutation schedules. The obtained theoretical results are visualized in a table that gives an overview of various subproblems belonging to the Two-Stage VRP with Profits and Buffers, their theoretical properties and how they are connected. For the Two-Machine Flow Shop with Buffers and the Orienteering Problem, two metaheuristics 2BF-ILS and VNSOP are presented that obtain favorable results in computational experiments when compared to other state-of-the-art algorithms. For the Two-Stage VRP with Profits and Buffers, an algorithmic framework for Iterative Search Algorithms with Variable Neighborhoods (ISAVaN) is proposed that generalizes aspects from 2BF-ILS as well as VNSOP. Various algorithms derived from that framework are evaluated in an experimental study. The evaluation methodology used for all computational experiments in this thesis takes the performance during the run time into account and demonstrates that algorithms for structurally different problems, which are encompassed by the Two-Stage VRP with Profits and Buffers, can be evaluated with similar methods. The results show that the most suitable choice for the components in these algorithms is dependent on the properties of the problem and the considered evaluation criteria. However, a number of similarities to algorithms that perform well for the Two-Machine Flow Shop with Buffers and the Orienteering Problem can be identified. The framework unifies these characteristics, providing a spectrum of algorithms that can be adapted to the specifics of the considered Vehicle Routing Problem.:1 Introduction 2 Background 2.1 Problem Motivation 2.2 Formal Definition of the Two-Stage VRP with Profits and Buffers 2.3 Review of Literature on Related Vehicle Routing Problems 2.3.1 Two-Stage Vehicle Routing Problems 2.3.2 Vehicle Routing Problems with Profits 2.3.3 Vehicle Routing Problems with Capacity- or Resource-based Restrictions 2.4 Preliminary Remarks on Subsequent Chapters 3 The Two-Machine Flow Shop Problem with Buffers 3.1 Review of Literature on Flow Shop Problems with Buffers 3.1.1 Algorithms and Metaheuristics for Flow Shops with Buffers 3.1.2 Two-Machine Flow Shop Problems with Buffers 3.1.3 Blocking Flow Shops 3.1.4 Non-Permutation Schedules 3.1.5 Other Extensions and Variations of Flow Shop Problems 3.2 Theoretical Properties 3.2.1 Computational Complexity 3.2.2 The Existence of Optimal Permutation Schedules 3.2.3 The Gap Between Permutation Schedules an Non-Permutation 3.3 A Modification of the NEH Heuristic 3.4 An Iterated Local Search for the Two-Machine Flow Shop Problem with Buffers 3.5 Computational Evaluation 3.5.1 Algorithms for Comparison 3.5.2 Generation of Problem Instances 3.5.3 Parameter Values 3.5.4 Comparison of 2BF-ILS with other Metaheuristics 3.5.5 Comparison of 2BF-OPT with NEH 3.6 Summary 4 The Orienteering Problem 4.1 Review of Literature on Orienteering Problems 4.2 Theoretical Properties 4.3 A Variable Neighborhood Search for the Orienteering Problem 4.4 Computational Evaluation 4.4.1 Measurement of Algorithm Performance 4.4.2 Choice of Algorithms for Comparison 4.4.3 Problem Instances 4.4.4 Parameter Values 4.4.5 Experimental Setup 4.4.6 Comparison of VNSOP with other Metaheuristics 4.5 Summary 5 The Two-Stage Vehicle Routing Problem with Profits and Buffers 5.1 Theoretical Properties of the Two-Stage VRP with Profits and Buffers 5.1.1 Computational Complexity of the General Problem 5.1.2 Existence of Permutation Schedules in the Set of Optimal Solutions 5.1.3 The Gap Between Permutation Schedules an Non-Permutation Schedules 5.1.4 Remarks on Restricted Cases 5.1.5 Overview of Theoretical Results 5.2 A Metaheuristic Framework for the Two-Stage VRP with Profits and Buffers 5.3 Experimental Results 5.3.1 Problem Instances 5.3.2 Experimental Results for O_{max R, Cmax≤B} 5.3.3 Experimental Results for O_{min Cmax, R≥Q} 5.4 Summary Bibliography List of Figures List of Tables List of Algorithms

Brain neural activity generates electrical discharges, which manifest as electrical and magnetic potentials around the scalp. Those potentials can be registered with magnetoencephalography (MEG) and electroencephalography (EEG) devices. Data acquired by M/EEG is extremely difficult to work with due to the inherent complexity of underlying brain processes and low signal-to-noise ratio (SNR). Machine learning techniques have to be employed in order to reveal the underlying structure of the signal and to understand the brain state. This thesis explores a diverse range of machine learning techniques which model the structure of M/EEG data in order to decode the mental state. It focuses on measuring a subject's variability and on modeling intrasubject variability. We propose to measure subject variability with a spectral clustering setup. Further, we extend this approach to a unified classification framework based on Laplacian regularized support vector machine (SVM). We solve the issue of intrasubject variability by employing a model with latent variables (based on a latent SVM). Latent variables describe transformations that map samples into a comparable state. We focus mainly on intrasubject experiments to model temporal misalignment.