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Cloning and evaluation of expression of the open reading frames of a South African G9P[6] rotavirus strain encoding rotavirus structural proteins VP2 and VP6 in bacteria and yeast / Louisa Aletta NaudéNaudé, Louisa Aletta January 2015 (has links)
Rotavirus infection causes severe gastroenteritis, affecting all children under the age of five
regardless of hygiene or water quality. The currently licensed vaccines succeeded in
reducing diarrhoea worldwide, but they still have shortcomings, especially the efficacy of the
vaccines in developing countries. One of the main reasons for this can be due to the
difference in strains, since the strains used to develop the currently licensed vaccines
(RotaTeq and Rotarix) were selected from strains circulating in the developed world (G1, G2,
G3 and G4), while the main strains present in Africa (G8, G9 and G12) were not included. A
second shortcoming of the currently licensed vaccines is the cost of these vaccines. The
vaccines are very expensive and most developing countries cannot afford the vaccines as
well as the fact that the manufacturing companies cannot produce enough vaccines for all
the countries. An attractive alternative to the currently licensed rotavirus vaccines is the
non-live vaccine candidate, virus-like particles, which can provide a possible cheaper, safer
and efficacious alternative or complement the currently licensed vaccines.
Therefore, in this study a South African G9P[6] rotavirus strain, RVA/Humanwt/
ZAF/GR10924/1999/G9P[6], was used to determine whether or not co-expression of the
structural proteins VP2 (genome segment 2) and VP6 (genome segment 6) was possible in
bacteria and yeast. The South African GR10924 G9P[6] neonatal strain was previously
obtained from a stool sample and the nucleotide consensus sequence was determined for
both genome segment 2 (VP2) and genome segment 6 (VP6). Bacterial codon optimised
coding regions or open reading frames were used in this study. The open reading frames
(ORFs) of the genome segments encoding, VP2 and VP6, were cloned into the expression
vector pETDuet-1, which allows for the simultaneous expression of two genes in bacteria.
The ORF of genome segment 6 was purchased from GeneScript and the ORF of genome
segment 2 was obtained from Dr AC Potgieter (Deltamune (Pty) Ltd R&D, South Africa).
Compatible restriction enzyme sites were used to sub-clone the ORF of the bacterial codon
optimised genome segments into the expression vector. Only the expression of the VP6
protein in bacteria was observed with Coomassie stained SDS-PAGE.
The ORFs encoding VP2 (genome segment 2) and VP6 (genome segment 6) of the wild
type GR10924 G9P[6] strain were cloned into the wide range yeast expression system
vector, pKM173, which allows for the simultaneous expression of more than one gene.
Several yeast strains were used in this study namely Kluyveromyces marxianus,
Kluyveromyces lactis, Candida deformans, Saccharomyces cerevisiae, Yarrowia lipolytica,
Arxula adeninivorans, Hansenula polymorpha and Debaryomyces hansenii. Expression of
both proteins was not detected in the several yeast strains, as seen with western blot analysis. DNA extractions were done on two colonies of each yeast strain that were used for
western blot analysis to evaluate successful integration into the yeast genomes. Only a few
of the colonies contained either both of the genome segments or only one of the two
genome segments of interest.
To summarise, the simultaneous expression of VP2 and VP6 from rotavirus GR10924
G9P[6] was not successful in bacteria or yeast, but it was possible to soluble express the
bacterial codon optimised GR10924 G9P[6] VP6 in bacteria using the pETDuet-1 as
expression vector. / MSc (Biochemistry), North-West University, Potchefstroom Campus, 2015
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Cloning and evaluation of expression of the open reading frames of a South African G9P[6] rotavirus strain encoding rotavirus structural proteins VP2 and VP6 in bacteria and yeast / Louisa Aletta NaudéNaudé, Louisa Aletta January 2015 (has links)
Rotavirus infection causes severe gastroenteritis, affecting all children under the age of five
regardless of hygiene or water quality. The currently licensed vaccines succeeded in
reducing diarrhoea worldwide, but they still have shortcomings, especially the efficacy of the
vaccines in developing countries. One of the main reasons for this can be due to the
difference in strains, since the strains used to develop the currently licensed vaccines
(RotaTeq and Rotarix) were selected from strains circulating in the developed world (G1, G2,
G3 and G4), while the main strains present in Africa (G8, G9 and G12) were not included. A
second shortcoming of the currently licensed vaccines is the cost of these vaccines. The
vaccines are very expensive and most developing countries cannot afford the vaccines as
well as the fact that the manufacturing companies cannot produce enough vaccines for all
the countries. An attractive alternative to the currently licensed rotavirus vaccines is the
non-live vaccine candidate, virus-like particles, which can provide a possible cheaper, safer
and efficacious alternative or complement the currently licensed vaccines.
Therefore, in this study a South African G9P[6] rotavirus strain, RVA/Humanwt/
ZAF/GR10924/1999/G9P[6], was used to determine whether or not co-expression of the
structural proteins VP2 (genome segment 2) and VP6 (genome segment 6) was possible in
bacteria and yeast. The South African GR10924 G9P[6] neonatal strain was previously
obtained from a stool sample and the nucleotide consensus sequence was determined for
both genome segment 2 (VP2) and genome segment 6 (VP6). Bacterial codon optimised
coding regions or open reading frames were used in this study. The open reading frames
(ORFs) of the genome segments encoding, VP2 and VP6, were cloned into the expression
vector pETDuet-1, which allows for the simultaneous expression of two genes in bacteria.
The ORF of genome segment 6 was purchased from GeneScript and the ORF of genome
segment 2 was obtained from Dr AC Potgieter (Deltamune (Pty) Ltd R&D, South Africa).
Compatible restriction enzyme sites were used to sub-clone the ORF of the bacterial codon
optimised genome segments into the expression vector. Only the expression of the VP6
protein in bacteria was observed with Coomassie stained SDS-PAGE.
The ORFs encoding VP2 (genome segment 2) and VP6 (genome segment 6) of the wild
type GR10924 G9P[6] strain were cloned into the wide range yeast expression system
vector, pKM173, which allows for the simultaneous expression of more than one gene.
Several yeast strains were used in this study namely Kluyveromyces marxianus,
Kluyveromyces lactis, Candida deformans, Saccharomyces cerevisiae, Yarrowia lipolytica,
Arxula adeninivorans, Hansenula polymorpha and Debaryomyces hansenii. Expression of
both proteins was not detected in the several yeast strains, as seen with western blot analysis. DNA extractions were done on two colonies of each yeast strain that were used for
western blot analysis to evaluate successful integration into the yeast genomes. Only a few
of the colonies contained either both of the genome segments or only one of the two
genome segments of interest.
To summarise, the simultaneous expression of VP2 and VP6 from rotavirus GR10924
G9P[6] was not successful in bacteria or yeast, but it was possible to soluble express the
bacterial codon optimised GR10924 G9P[6] VP6 in bacteria using the pETDuet-1 as
expression vector. / MSc (Biochemistry), North-West University, Potchefstroom Campus, 2015
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A Method for Optimised Allocation of System Architectures with Real-time ConstraintsMarcus, Ventovaara, Arman, Hasanbegović January 2018 (has links)
Optimised allocation of system architectures is a well researched area as it can greatly reduce the developmental cost of systems and increase performance and reliability in their respective applications.In conjunction with the recent shift from federated to integrated architectures in automotive, and the increasing complexity of computer systems, both in terms of software and hardware, the applications of design space exploration and optimised allocation of system architectures are of great interest.This thesis proposes a method to derive architectures and their allocations for systems with real-time constraints.The method implements integer linear programming to solve for an optimised allocation of system architectures according to a set of linear constraints while taking resource requirements, communication dependencies, and manual design choices into account.Additionally, this thesis describes and evaluates an industrial use case using the method wherein the timing characteristics of a system were evaluated, and, the method applied to simultaneously derive a system architecture, and, an optimised allocation of the system architecture.This thesis presents evidence and validations that suggest the viability of the method and its use case in an industrial setting.The work in this thesis sets precedence for future research and development, as well as future applications of the method in both industry and academia.
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Online Marketing Trends / Online Marketing TrendsHorecká, Ivana January 2015 (has links)
This thesis deals with online marketing trends. Its main goal is to define the latest online marketing trends, create a website with the free online marketing trends, and analyse their effectiveness. The theoretical part brings a thorough description of the latest online marketing trends. Moreover, it provides an insight into the latest trends in the website development. The chosen online marketing trends defined in the theoretical part are subsequently applied on a newly created website. All the steps taken throughout the process of creating the website together with the application of the latest trends are described in the practical part. The website is created gradually in the course of writing this thesis and only free online marketing tools are applied on this website. The effectiveness of the chosen online marketing trends is monitored and consequently analysed. The recommendations resulting from the analysis are provided at the end of the practical part. This thesis might serve as a guide for those who wish to create a website with the latest online marketing trends.
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Ein Gebietszerlegungsverfahren für parabolische Probleme im Zusammenhang mit Finite-Volumen-Diskretisierung / A Domain Decomposition Method for Parabolic Problems in connexion with Finite Volume MethodsHeld, Joachim 21 December 2006 (has links)
No description available.
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Analýza a optimalizace datové komunikace pro telemetrické systémy v energetice / Analysis and Optimization of Data Communication for Telemetric Systems in EnergyFujdiak, Radek January 2017 (has links)
Telemetry system, Optimisation, Sensoric networks, Smart Grid, Internet of Things, Sensors, Information security, Cryptography, Cryptography algorithms, Cryptosystem, Confidentiality, Integrity, Authentication, Data freshness, Non-Repudiation.
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