This thesis details investigations into the generation and synthetic utility of α,β-unsaturated acyl ammonium intermediates using isothioureas as Lewis base organocatalysts to generate a range of heterocyclic products. Initial investigations focussed on the development of a Michael addition-lactonisation protocol utilising α,β-unsaturated acyl ammonium intermediates (generated in situ from HBTM 2.1 and α,β-unsaturated homoanhydrides) and a range of 1,3-dicarbonyl nucleophiles. Products could be isolated as lactones or as ring-opened highly functionalised esters, giving good yields and excellent enantioselectivity. 1,3-Diketones were shown to generate a mixture of regioisomers and whereas 1,3-ketoesters afforded only a single regioisomer. A crystal structure of an α,β-unsaturated acyl ammonium intermediate was obtained that clearly demonstrated steric blocking of the Si- face of the alkene by the catalyst stereodirecting groups, therefore it can be postulated that enantiocontrol in the addition occurs by selective nucleophilic addition from the Re- face. α,β-Unsaturated acyl ammonium species were then shown to participate in asymmetric annulation processes with benzazole nucleophiles to afford highly functionalised heterocyclic products, with both lactone and lactam formation observed. The relationship between nucleophile structure and process regioselectivity was investigated and it was demonstrated that benzothiazole and benzimidazole nucleophiles afforded preferential N-cyclisation to give lactams whilst benzoxazoles exhibited O-cyclisation to form lactones. It was also possible to influence the regioselectivity by changing the electronic properties of the acyl group (R'). Due to the reactivity of this class of nucleophiles it was possible to access products with quaternary centres. Palladium-catalysed cross coupling reactions were also successful on 3-bromo substituted lactams, demonstrating the potential for further derivatising these interesting heterocyclic products. Finally, a cascade protocol was developed that employed Michael-Michael-lactonisation steps to give tricyclic products from enone malonate nucleophiles and α,β-unsaturated acyl ammonium intermediates (generated in situ by addition of HBTM 2.1 into acid chlorides). Interestingly, the reaction showed higher enantioselectivity at elevated temperatures (70 ˚C) and moderate regioselectivity (1,4- vs. 1,2-addition), which could not be improved after extensive screening. A range of lactones was isolated in moderate yields and enantioselectivity.

The objective of this study was to develop new synthetical routes to natural and industrial products utilizing ketene cycioaddition reactions. The cycioaddition of diphenylketene with α,β-unsaturated imines yields (2+2) cycioaddition products, g-lactams. However, electron donating groups, such as dimethylamine, in the 4-position of the α,β-unsaturated imines result in (4+2) cycloaddition products, ∂-lactams. Dichloroketene reacted with α,β-unsaturated imines to yield (4+2) cycloaddition products, g-lactams. Large substituents in the 4-position of a, ^-unsaturated imines resulted in a (2+2) cycioaddition product, β-lactam. The ∂-lactams derived from dichloroketene are easily dehydrochlorinated to the corresponding 2-pyridornes.

The synthesis of E- and Z-1,1,2,3-tetramethylsilacyclobutanes is described. Pyrolysis of either isomer at 398.2 °C provides the same products but in different amounts: propene, E- and Z-2-butene, allylethyldimethylsilane, dimethylpropylsilane, the respective geometric isomers, 1,1,2,3,3-pentamethyl-1,3-disilacyclobutane, 1,1, l-ethyldimethyl-2,2,2-vinyldimethyl-disilane and E- and Z-1,1,2,3,3,4-hexamethyl-1,3-disilacyclobutane. Mechanisms involving di- and trimethylsilenes are described for disilane formation and rate constants of the elementary steps for the fragmentation reactions are reported. Photochemically generated dimethylsilylene in the hydrocarbon solution inserts into the cyclic Ge-C or Si-C bonds of 1,1-dimethylgerma- or silacyclobutane to produce 1-germa-2-sila- or 1,2-disilacyclopentane. The relative reactivities of 1,1-dimethylgerma- and silacyclobutanes toward the dimethylsilylene have been determined. The carbenoid resulting from the cuprous chloride catalyzed decomposition of diazomethane at 25 °C in cyclohexane reacts with 1,1-dimethylgermacyclobutane to give, surprisingly 1,1,5,5-tetramethyl-1,5-digermacyclooctane as the major product. The reactions of the carbenoid with 1,1-dimethylsilacyclobutane are described. The kinetics of gas phase thermal decomposition of 1,1-dimethylgermacyclobutane has been studied over the temperature range, 684 - 751 K at pressures near 14 Torr. The Arrhenius parameters for the formation of ethylene are k_1 (s^-1) = 10^(14.6 ± 0.3) exp (62.7 ± 2.9 kcal mol^-1/RT) and those for the formation of propene and cyclopropane are k_2 (s^-1) = 10^(14.0 ± 0.1 ) exp (60.4 ± 2.8 kcal mol^-1/RT). Static gas phase pyrolyses of 1,1-dimethyl-lsilacyclobutene, DMSCB, in the presence of a variety of alkenes and alkynes at 260 - 365 °C have been studied. Our experimental results suggest that under these conditions the DMSCB ring opens to 1,1-dimethyl-l-silabutadiene, which either recyclizes to DMSCB or reacts with alkenes or alkynes in competing 4 + 2 and 2 + 2 cycloadditions.

The oxidation of simple benzene derivatives by a mutant of Pseudomonas putida, called 39-D, produces cis-arenediols (1). The diols are enantiomerically pure and can be used as synthons for the preparation of a variety of interesting compounds because of their stereochemistry and the special array of functional groups. See: Figure 1 cis -Toluenedio] (2) served as a chiral intermediate in an efficient synthesis of enone (3). which has been used to attain prostaglandin Fra and Neplanocin A. The same diol (2) was transformed into both enantiomers of a terpene synthon (4). See: Figures 2, 3, 4 Oxidative functionalization of cis-chlorobenzenediol (5) afforded intermediates suitable for transformation into L-erythrose (6), conduritol C (7), dihydroconduritol C (8) and aminoconduntol F-4 (9). See: Figures 5, 6, 7, 8 The application of this versatile synthetic protocol culminated in an approach to kifunensine (10), an important glycosidase inhibitor, which was approached according to the following retrosynthetic analysis: See: Figures 10, 11, 12, 5, 14, 13 A detailed study of the nucleophilic opening of epoxide 13 was carried out in order to better understand the parameters of the diastereoselective functionalization of arenediols. Details are provided for the oxidative functionalization of chlorobenzenediol (5), the key compound in all of the projects discussed. / Ph. D.

Thesis: Ph. D., Massachusetts Institute of Technology, Department of Chemistry, 1978 / Vita. / Includes bibliographical references. / Ph. D. / Ph. D. Massachusetts Institute of Technology, Department of Chemistry

A brief introduction explaining phosphine ligand properties, Pd catalysed cross-coupling reactions; the importance of the steps involved in the catalytic cycle (oxidative addition, transmetalation & reductive elimination), mechanistic studies and a comparison of various reactions will give an overview of important cross-coupling reactions and their limitations. The development of a “super-concentrated” (5M) Pd catalysed Kumada type coupling reaction has been developed for coupling a range of aryl bromide and chloride substrates with the Grignard reagents ((p-CF₃-C₆H₄)MgBr)) and PhMgBr in methyl-tetrahydrofuran (Me-THF). Using a range of bidentate ligands such as bis-phosphinoferrocenyl ligands, good conversions were achieved using small amounts of solvent; up to 10 times less than typical procedures in THF. The unsymmetrical Pt complexes of the form [Pt(P-P)Br₂], [Pt(P-P)(Ph)Br] and [Pt(P-P)Ph₂] have been synthesised and characterised. The variations of substituents on the ligand system and the steric bulk have been shown to have a dramatic effect on the rate of transmetalation. The results provide one explanation why 1,1’-bis(di tert-butylphosphino)ferrocene (dtbpf), an excellent ligand for certain Suzuki reactions, is quite poor in reactions where transmetalation is more difficult. Palladium dichloride complexes of the ferrocenylphosphine based ligands 1,1’-bis- (diphenylphosphino)ferrocene (dppf), 1,1’-bis-(diisopropylphosphino)ferrocene (dippf) and 1,1’-bis-(di-tert-butylphosphino)ferrocene (dtbpf) have been shown to be active in the Hiyama cross-coupling of p-bromoacetophenone and vinyltrimethoxysilane (CHCH₂Si(OMe₃)) in the presence of TBAF under thermal heating and microwave conditions. Ligands with the optimum balance for promoting the transmetalation, oxidative addition and reductive elimination steps along the reaction pathway have been identified. Competition experiments are consistent with slow transmetalation being an issue with the Hiyama reaction relative to the Suzuki coupling. A novel protocol has been developed for the synthesis of aryl-alkyl ethers via C-O bond activation under Pd catalysed conditions. Utilising the unsymmetrical 1-bis-(ditertbutyl-1’- bis-diphenylphosphino)ferrocene (dtbdppf) under optimised conditions with silicon based nucleophiles and NaOH or TBAF as an activator, the formation of methyl, ethyl, n-propyl and n-butyl ethers with a range of aryl halides was achieved in good yield.

Luminescent lanthanide containing coordination polymers and metal-organic frameworks hold great potential in many applications due to their distinctive spectroscopic properties. While the ability to design coordination polymers for specific functions is often mentioned as a major benefit bestowed upon these compounds, the lack of a meaningful understanding of the crystal engineering and luminescence in lanthanide coordination polymers remains a significant challenge toward functional design. Currently, the study of luminescence attributed to these compounds is based on the antenna effect as derived from molecular systems, where organic antennae are used to facilitate lanthanide-centered luminescence. This molecular based approach does not take into account the unique features of extended network solids, particularly the formation of band structure. By comparing molecular and band-based approaches, it was determined that the band structure of the organic sensitizing linker needs to be considered when evaluating the luminescence of lanthanide coordination polymers. This new model, as well as work on the crystal engineering and sensor applications of these materials will be presented. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2017. / FAU Electronic Theses and Dissertations Collection

D. Tech. (Department of Chemistry, Faculty of Applied and Computer Sciences), Vaal University of Technology / In the present era of water resources scarcity, efficient treatment of wastewater is a major prerequisite especially for growing economy. Numerous approaches have been studied for the development of cheaper and more effective adsorbents for removal of both organic and inorganic pollutants from wastewater. The present study seeks to harness the potential of biosorption and nanotechnology by producing more efficient, selective, mechanically stable and effective adsorbents for removal of organic and inorganic pollutants. The biosorbent-magnetic nanomaterial was synthesized by coating magnetite nanoparticles with sodium hydroxide treated pine cone by co-precipitation method. Magnetite coated pine bio-composite was then modified by cross-linking with hexamethylene diisocyanate and epichlorohydrin to the molecular recognition compound “cyclodextrin”. These novel biosorbent-magnetic nanoparticle materials were explored in overcoming the drawbacks of the biosorbent alone and selectively remove inorganic and organic pollutants from complex matrices. The synthesized materials were characterized by several analytical techniques including, Fourier Transformed Infrared Spectroscopy (FTIR), Thermogravimetric analysis (TGA), X-Ray Diffraction (XRD), Scanning Electron Microscopy-Energy Dispersive X-Ray (SEM–EDX), Transmission Electron Microscopy (TEM), Brunauer, Emmett and Teller Isotherm (BET) surface area analysis, X-ray Photoelectron Spectroscopy (XPS), Vibrating Sample Magnetometer (VSM) and pH at point of zero charge (pHpzc). Sodium hydroxide treated pine cone and magnetite coated pine cone were applied for both chromium(VI) and arsenic(III) adsorption while the magnetite coated pine cone, magnetite coated pine cone crosslinked to cyclodextrin using both epichlorohydrin and hexamethylene diisocyanate were applied for 4-nitrophenol removal from aqueous solution. Batch adsorption studies were performed to optimize operating parameters such as solution pH, adsorbent dose, contact time, temperature and initial concentration. Pseudo first, pseudo second, intraparticle diffusion, pore and film diffusion kinetic models were determined to investigate the mechanism of adsorption process. Coefficient of correlation, r2, and variable error, methods were also applied in the determination of the best fit of the kinetic method. Structural characterization of magnetite coated pine cone and the magnetite coated pine crosslinked to cyclodextrin using 1,6-hexamethylene diisocyanate and epichlorohydrin were confirmed by characterization techniques applied. The adsorption of Cr(VI), As(III) and 4-nitrophenol was found to be dependent on the solution pH, adsorbent dose, initial concentration, temperature and ionic strength. Kinetic modelling revealed that the adsorption of Cr(VI), As(III) and 4-nitrophenol is controlled by pseudo second order kinetic model suggesting surface adsorption and intraparticle diffusion model. Intraparticle, pore and film diffusion models gave further insight into the controlling diffusion mechanism involved in the adsorption process for all pollutants investigated. Equilibrium studies indicated that the adsorption of all pollutants followed Langmuir isotherm indicating that adsorption sites are homogeneous in nature. The obtained thermodynamic parameters demonstrated that the adsorption of Cr(VI), As(III) and 4-nitrophenol were spontaneous, favourable and endothermic in nature. Anionic effect positively affected Cr(VI) and As(III) removal but had a negative effect on the 4-nitrophenol adsorption. Adsorption of 4-nitrophenol onto the nanocomposite adsorbents was attributed to multiple adsorbent-adsorbate interactions such as hydrogen bonding, hydrophobic attraction and guest host interaction. Magnetite coated pine better removed Cr(VI) and As(III) from aqueous solution than NaOH treated pine cone biomaterial while the magnetite coated pine crosslinked to cyclodextrin using 1,6-hexamethylene diisocyanate exhibited better adsorption performance for 4-nitrophenol removal than the nanocomposite crosslinked using epichlorohydrin and the magnetite coated pine cone.

Earnest carbohydrate research was initiated in the nineteenth century by several talented organic chemists. Carbohydrates, now known to play essential roles in a range of fundamental biological processes, are presently studied by a throng of scientists from many fields, including: biochemistry, molecular biology, immunology, structural biology, medicine, agriculture, pharmacology and, of course, chemistry. Organic chemistry remains as relevant to carbohydrate research as it has ever been; its practitioners, with their skills in synthesis and fundamental understanding of molecules, are truly indispensable. This thesis details various synthetic endeavours within the field of carbohydrate chemistry. It describes four projects with goals as diverse as natural product synthesis, rational inhibitor design and the development of new reagents in organic synthesis. The first chapter provides an account of the synthesis of compound 1, a potent germination stimulant present in smoke, from D-xylose. Many analogues of 1 were prepared from carbohydrates and evaluated as germination stimulants, which permitted the dissemination of several structure-activity relationships. Subsequent chapters describe the design and preparation of inhibitors for various carbohydrate-processing enzymes. Compounds 55 and 56 were sought after as putative synergistic inhibitors of a Vitis vinifera (grape) uridine diphospho-glucose:flavonoid 3-O-glucosyltransferase (VvGT1). It was hoped that crystallographic investigations of VvGT1-UDP-2/3 complexes by a collaborator, structural biologist Professor Gideon Davies, would aid in clarifying mechanistic aspects of this enzyme.Compounds 114, 115 and 118 were prepared as putative arabinanase inhibitors. Once again, this work was undertaken to assist in crystallographic studies that might provide a better understanding of how these enzymes operate. The thesis concludes by describing the development of compound 152.HCl, a novel reagent for the diazotransfer reaction. Previously, this reaction utilised trifluoromethanesulfonyl azide (TfN3), an expensive and explosive liquid with a poor shelf-life, to convert a primary amine directly into an azide. Reagent 152.HCl was developed to replace TfN3 in this useful synthetic transformation. A one-pot procedure enabled the simple and inexpensive preparation of 152.HCl, which was demonstrated to be shelf-stable, crystalline and, crucially, effective in the diazotransfer reaction.

Lignin polymers provide natural rigidity to plant cell walls by forming complex molecular networks with polysaccharides such as cellulose and hemicellulose. This evolved strategy equips plants with recalcitrance to biological and chemical degradation. While naturally beneficial, recalcitrance complicates the use of inedible plant materials as feedstocks for biofuel production. Genetically modifying lignin biosynthesis is an effective way to generate varieties of bioenergy crops with reduced recalcitrance, but certain lignin-modified plants display undesirable phenotypes and/or unexplained effects on lignin composition, suggesting that the process and regulation of lignin biosynthesis is not fully understood. Given the intrinsic complexities of metabolic pathways in plants and the technical hurdles in understanding them purely with experimental methods, the objective of this dissertation is to develop novel computational tools combining static, constraint-based, and dynamic, kinetics-based modeling approaches for a systematic analysis of lignin biosynthesis in wild-type and genetically engineered plants. Pathway models are constructed and analyzed, yielding insights that are difficult to obtain with traditional molecular and biochemical approaches and allowing the formulation of new, testable hypotheses with respect to pathway regulation. These model-based insights, once they are verified experimentally, will form a solid foundation for the rational design of genetic modification strategies towards the generation of lignin-modified crops with reduced recalcitrance. More generically, the methods developed in this dissertation are likely to have wide applicability in similar studies of complex, ill-characterized pathways where regulation occurring at the metabolic level is not entirely known.