<p> Invasive species have developed long-term relationships with humans, especially since the start of the Industrial Revolution, and they have caused immense damage to native environments, ecosystems, and economies. An emerging invasive insect that has recently gained considerable attention is the spotted lanternfly (SLF). Early detection of SLF infestations in new areas or at low densities can lead to a more efficacious management and reduce costs associated with control them. Developing approaches to detect the presence of invasive species, favorable habitats for their establishment, and predicting potential spread will be crucial for effective management strategies to protect native environments and the economy. The goal of my thesis is to improve the understanding of how spotted lanternfly changes the spectral profile and chemical composition of host tree species. I found that spotted lanternfly feeding influences host canopy chemical and spectral properties. Specifically, I was able to use leaf-level hyperspectral measurements to differentiate SLF infestations levels in silver maple and red maple, shown by my first chapter, along with black walnut in my second chapter. Further, I was able to find differences in phenolic compounds in response to SLF infestations in red maple. The results of my study have the potential to be scaled up from leaf-level to landscape-level measurements. I have identified spectral signatures in red maple, silver maple, and black walnut that can be used to identify infestations from spectral data collected from UAVs or satellites. This potentially provides a new method for detection that is easier than traditional ones (like manual scouting and trapping). </p>

<p>Accurate 3D landscape models of cities or mountains have wide applications in mission</p> <p>planning, navigation, geological studies, etc. Lidar scanning using drones can provide high</p> <p>accuracy 3D landscape models, but the data is more expensive to collect as the area of</p> <p>each scan is limited. Thanks to recent maturation of Very-High-Resolution (VHR) optical</p> <p>imaging on satellites, people nowadays have access to stereo images that are collected on a</p> <p>much larger area than Lidar scanning. My research addresses unique challenges in satellite</p> <p>stereo, including stereo rectification with pushbroom sensors, dense stereo matching using</p> <p>image pairs with varied appearance, e.g. sun angles and surface plantation, and rasterized</p> <p>digital surface model (DSM) generation. The key contributions include the Continuous 3D-</p> <p>Label Semi-Global Matching (CoSGM) and a large scale dataset for satellite stereo processing</p> <p>and DSM evaluation.</p>

<p dir="ltr">Canopy height is a fundamental metric for extracting valuable information about forested areas. Over the past decade, Lidar technology has provided a straightforward approach to measuring canopy height using various platforms such as terrestrial, unmanned aerial vehicle (UAV), airborne, and satellite sensors. However, satellite Lidar data, even with its global coverage, has a sparse sampling pattern that doesn’t provide continuous coverage over the globe. In contrast, satellites like LANDSAT offer seamless and widespread coverage of the Earth's surface through spectral data. Can we exploit the abundant spectral information from satellites like LANDSAT and ECOSTRESS to infer structural information obtained from Lidar satellites like Global Ecosystem Dynamic Investigation (GEDI)? This study aims to develop a deep learning model that can infer canopy height derived from sparsely observed Lidar waveforms using multi-sensor spectral data from spaceborne platforms. Specifically designed for localized site, the model focuses on county-level canopy height estimation, taking advantage of the relationship between canopy height and spectral reflectance that can be established in a local setting – something which might not exist universally. The study hopes to achieve a framework that can be easily replicable as height is a dynamic metric which changes with time and thus requires repeated computation for different time periods.</p><p dir="ltr">The thesis presents a series of experiments designed to comprehensively understand the influence of different spectral datasets on the model’s performance and its effectiveness in different types of test sites. Experiment 1 and 2 utilize Landsat spectral band values to extrapolate canopy height, while Experiment 3 and 4 incorporate ECOSTRESS land surface temperature and emissivity band values in addition to Landsat data. Tippecanoe County, predominantly composed of cropland, serves as the test site for Experiment 1 and 3, while Monroe County, primarily covered by forests, serves as the test site for Experiment 2 and 4. When compared to the Airborne Lidar dataset from the United States Geological Survey (USGS) – 3D Elevation Program (3DEP), the model achieves a Root Mean Square Error (RMSE) of 4.604m for Tippecanoe County using Landsat features while 5.479m for Monroe County. After integrating Landsat and ECOSTRESS features, the RMSE improves to 4.582m for Tippecanoe County but deteriorates to 5.860m for Monroe County. Overall, the study demonstrates comparable results to previous research without requiring feature engineering or extensive pre-processing. Furthermore, it successfully introduces a novel methodology for integrating multiple sources of satellite data to address this problem.</p>

<p dir="ltr">This study analyzes one subset of twelve lakes within Kosciusko County, Indiana between 2015 and 2021 to provide a quantitative understanding of the mechanisms which influence onset and occurrence of HABs. Analysis of water samples, balanced by imagery from satellite remote sensing platforms, are used to quantify the biogeochemical state of these water systems and better understand the mechanisms involved in formation of HABs. Parameters studied include in-situ measurements (e.g., water temperature), laboratory measurements (e.g., microcystin, nitrogen, and phosphorous concentrations), and satellite derived responses (chlorophyll-a). Results indicate no single parameter is correlated with cyanotoxin concentrations, but instead multiple parameters have a synergistic effect on algal bloom growth and toxicity.</p>

<p dir="ltr">Accurate 3D point clouds are crucial in various fields, and the advancement of software algorithms has facilitated the reconstruction of 3D models from high-quality images. Notably, both single-camera and multi-camera systems have gained popularity in obtaining these images. While single-camera setups offer simplicity and cost-effectiveness, multi-camera systems provide a broader field of view and improved coverage. However, a crucial gap persists, a lack of direct comparison and comprehensive analysis regarding the quality of point clouds acquired from each system. This thesis aims to bridge this gap by evaluating the point cloud quality obtained from both single-camera and multi-camera systems, considering various factors such as lighting conditions, camera settings, and the stability of multi-camera setup in the 3D reconstruction process. Our research also aims to provide insights into how these factors influence the quality and performance of the reconstructed point clouds. By understanding the strengths and limitations of each system, researchers and professionals can make informed decisions when selecting the most suitable 3D imaging approach for their specific applications. To achieve these objectives, we designed and utilized a custom rig with three vertically stacked cameras, each equipped with a fixed camera lens, and maintained uniform lighting conditions. Additionally, we employed a single-camera system with a zoom lens and non uniform lighting conditions. Through noise analysis, our results revealed several crucial findings. The single-camera system exhibited relatively higher noise levels, likely due to non-uniform lighting and the use of a zoom lens. In contrast, the multi-camera system demonstrated lower noise levels, which can be attributed to well-lit conditions and the use of fixed lenses. However, within the multi-camera system, instances of significant instability led to a substantial increase in noise levels in the reconstructed point cloud compared to more stable conditions. Our noise analysis showed the multi-camera system preformed better compared to the single-camera system in terms of noise quality. However, it is crucial to recognize that noise detection also revealed the influence of factors like lighting conditions, camera calibration and camera stability of multi-camera systems on the reconstruction process.</p>

<p>Emerging mobile mapping systems include a wide range of platforms, for instance, manned aircraft, unmanned aerial vehicles (UAV), terrestrial systems like trucks, tractors, robots, and backpacks, that can carry multiple sensors including LiDAR scanners, cameras, and georeferencing units. Such systems can maneuver in the field to quickly collect high-resolution data, capturing detailed information over an area of interest. With the increased volume and distinct characteristics of the data collected, practical quality control procedures that assess the agreement within/among datasets acquired by various sensors/systems at different times are crucial for accurate, robust interpretation. Moreover, the ability to derive semantic information from acquired data is the key to leveraging the complementary information captured by mobile mapping systems for diverse applications. This dissertation addresses these challenges for different systems (airborne and terrestrial), environments (urban and rural), and applications (agriculture, archaeology, hydraulics/hydrology, and transportation).</p> <p>In this dissertation, quality control procedures that utilize features automatically identified and extracted from acquired data are developed to evaluate the relative accuracy between multiple datasets. The proposed procedures do not rely on manually deployed ground control points or targets and can handle challenging environments such as coastal areas or agricultural fields. Moreover, considering the varying characteristics of acquired data, this dissertation improves several data processing/analysis techniques essential for meeting the needs of various applications. An existing ground filtering algorithm is modified to deal with variation in point density; digital surface model (DSM) smoothing and seamline control techniques are proposed for improving the orthophoto quality in agricultural fields. Finally, this dissertation derives semantic information for diverse applications, including 1) shoreline retreat quantification, 2) automated row/alley detection for plant phenotyping, 3) enhancement of orthophoto quality for tassel/panicle detection, and 4) point cloud semantic segmentation for mapping transportation corridors. The proposed approaches are tested using multiple datasets from UAV and wheel-based mobile mapping systems. Experimental results verify that the proposed approaches can effectively assess the data quality and provide reliable interpretation. This dissertation highlights the potential of modern mobile mapping systems to map challenging environments for a variety of applications.</p>

<div>This dissertation addresses the problem of how to design a convolutional neural network (CNN) for giving semantic labels to the points on the ground given the satellite image coverage over the area and, for the ground truth, given the noisy labels in OpenStreetMap (OSM). This problem is made challenging by the fact that -- (1) Most of the images are likely to have been recorded from off-nadir viewpoints for the area of interest on the ground; (2) The user-supplied labels in OSM are frequently inaccurate and, not uncommonly, entirely missing; and (3) The size of the area covered on the ground must be large enough to possess any engineering utility. As this dissertation demonstrates, solving this problem requires that we first construct a DSM (Digital Surface Model) from a stereo fusion of the available images, and subsequently use the DSM to map the individual pixels in the satellite images to points on the ground. That creates an association between the pixels in the images and the noisy labels in OSM. The CNN-based solution we present yields a 4-8% improvement in the per-class segmentation IoU (Intersection over Union) scores compared to the traditional approaches that use the views independently of one another. The system we present is end-to-end automated, which facilitates comparing the classifiers trained directly on true orthophotos vis-`a-vis first training them on the off-nadir images and subsequently translating the predicted labels to geographical coordinates. This work also presents, for arguably the first time, an in-depth discussion of large-area image alignment and DSM construction using tens of true multi-date and multi-view WorldView-3 satellite images on a distributed OpenStack cloud computing platform.</div>

<p dir="ltr">Digital soil mapping (DSM) combines field and laboratory data with environmental factors to predict soil properties. The accuracy of these predictions depends on factors such as model selection, data quality and quantity, and landscape characteristics. In our study, we investigated the impact of sample density and the use of various environmental covariates (ECs) including slope, topographic position index, topographic wetness index, multiresolution valley bottom flatness, and multiresolution ridge top flatness, as well as the spatial resolution of these ECs on the predictive accuracy of four predictive models; Cubist (CB), Random Forest (RF), Regression Kriging (RK), and Ordinary Kriging (OK). Our analysis was conducted at three sites in Indiana: the Purdue Agronomy Center for Research and Education (ACRE), Davis Purdue Agriculture Center (DPAC), and Southeast Purdue Agricultural Center (SEPAC). Each site had its unique soil data sampling designs, management practices, and topographic conditions. The primary focus of this study was to predict the spatial distribution of soil properties, including soil organic matter (SOM), cation exchange capacity (CEC), and clay content, at different depths (0-10cm, 0-15cm, and 10-30cm) by utilizing five environmental covariates and four spatial resolutions for the ECs (1-1.5 m, 5 m, 10 m, and 30 m).</p><p dir="ltr">Various evaluation metrics, including R², root mean square error (RMSE), mean square error (MSE), concordance coefficient (pc), and bias, were used to assess prediction accuracy. Notably, the accuracy of predictions was found to be significantly influenced by the site, sample density, model type, soil property, and their interactions. Sites exhibited the largest source of variation, followed by sampling density and model type for predicted SOM, CEC, and clay spatial distribution across the landscape.</p><p dir="ltr">The study revealed that the RF model consistently outperformed other models, while OK performed poorly across all sites and properties as it only relies on interpolating between the points without incorporating the landscape characteristics (ECs) in the algorithm. Increasing sample density improved predictions up to a certain threshold (e.g., 66 samples at ACRE for both SOM and CEC; 58 samples for SOM and 68 samples for CEC at SEPAC), beyond which the improvements were marginal. Additionally, the study highlighted the importance of spatial resolution, with finer resolutions resulting in better prediction accuracy, especially for SOM and clay content. Overall, comparing data from the two depths (0-10cm vs 10-30cm) for soil properties predications, deeper soil layer data (10-30cm) provided more accurate predictions for SOM and clay while shallower depth data (0-10cm) provided more accurate predictions for CEC. Finally, higher spatial resolution of ECs such as 1-1.5 m and 5 m contributed to more accurate soil properties predictions compared to the coarser data of 10 m and 30 m resolutions.</p><p dir="ltr">In summary, this research underscores the significance of informed decisions regarding sample density, model selection, and spatial resolution in digital soil mapping. It emphasizes that the choice of predictive model is critical, with RF consistently delivering superior performance. These findings have important implications for land management and sustainable land use practices, particularly in heterogeneous landscapes and areas with varying management intensities.</p>

<p>Current watershed-scale, nonpoint source (NPS) pollution models do not represent the processes and impacts of agricultural best management practices (BMP) on water quality with sufficient detail. To begin addressing this gap, a novel process-based, watershed-scale, water quality model (WEPP-WQ) was developed based on the Water Erosion Prediction Project (WEPP) and the Soil and Water Assessment Tool (SWAT) models. The proposed model was validated at both hillslope and watershed scales for runoff, sediment, and both soluble and particulate forms of nitrogen and phosphorus. WEPP-WQ is now one of only two models which simulates BMP impacts on water quality in ‘high’ detail, and it is the only one not based on USLE sediment predictions. Model validations indicated that particulate nutrient predictions were better than soluble nutrient predictions for both nitrogen and phosphorus. Predictions of uniform conditions outperformed nonuniform conditions, and calibrated model simulations performed better than uncalibrated model simulations. Applications of these kinds of models in real-world, historical simulations are often limited by a lack of field-scale agricultural management inputs. Therefore, a prototype tool was developed to derive management inputs for hydrologic models from remotely sensed imagery at field-scale resolution. At present, only predictions of crop, cover crop, and tillage practice inference are supported and were validated at annual and average annual time intervals based on data availability for the various management endpoints. Extraction model training and validation were substantially limited by relatively small field areas in the observed management dataset. Both of these efforts contribute to computational modeling research and applications pertaining to agricultural systems and their impacts on the environment.</p>