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Hydrolytic enzyme production by Trichoderma and their potential as aggresins in biological controlMustafa, Muskhazli January 2000 (has links)
No description available.
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The Role of Mitochondrial Alternative Oxidase in Plant-pathogen InteractionsCvetkovska, Marina 11 December 2012 (has links)
Alternative oxidase (AOX) is a non-energy conserving branch of the mitochondrial electron
transport chain (ETC) which has been hypothesized to modulate the level of reactive oxygen
species (ROS) and reactive nitrogen species (RNS) in plant mitochondria. The aim of the
research presented herein is to provide direct evidence in support of this hypothesis and to
explore the implications of this during plant-pathogen interactions in Nicotiana tabacum. We
observed leaf levels of ROS and RNS in wild-type (Wt) tobacco and transgenic tobacco with
altered AOX levels and we found that plants lacking AOX have increased levels of both NO and
mitochondrial O2
- compared Wt plants. Based on the results we suggest that AOX respiration
acts to reduce the generation of ROS and RNS in plant mitochondria by dampening the leak of
electrons from the ETC to O2 or nitrite.
We characterized multiple responses of tobacco to different pathovars of the bacterial pathogen
Pseudomonas syringae. These included a compatible response associated with necrosis (pv
tabaci), an incompatible response that included the hypersensitive response (HR) (pv
maculicola) and an incompatible response that induced defenses (pv phaseolicola). We show that
the HR is accompanied by an early mitochondrial O2
- burst prior to cell death. Also, we found
iii
that the appearance of HR and the appearance of the mitochondrial O2
- burst are delayed in
transgenic plants lacking AOX. A similar delay is seen in transgenic plants treated with the
complex III inhibitor antimycin A. In Wt plants, expression of Aox1a is suppressed during the
HR response to pv maculicola despite the accumulation of signaling molecules known to induce
Aox1a transcription. Also, MnSOD activity declined during the HR. We suggest that the
mitochondrial ROS burst controlled by AOX and MnSOD is an important component for the
induction and coordination of the HR during plant-pathogen interactions.
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The Role of Mitochondrial Alternative Oxidase in Plant-pathogen InteractionsCvetkovska, Marina 11 December 2012 (has links)
Alternative oxidase (AOX) is a non-energy conserving branch of the mitochondrial electron
transport chain (ETC) which has been hypothesized to modulate the level of reactive oxygen
species (ROS) and reactive nitrogen species (RNS) in plant mitochondria. The aim of the
research presented herein is to provide direct evidence in support of this hypothesis and to
explore the implications of this during plant-pathogen interactions in Nicotiana tabacum. We
observed leaf levels of ROS and RNS in wild-type (Wt) tobacco and transgenic tobacco with
altered AOX levels and we found that plants lacking AOX have increased levels of both NO and
mitochondrial O2
- compared Wt plants. Based on the results we suggest that AOX respiration
acts to reduce the generation of ROS and RNS in plant mitochondria by dampening the leak of
electrons from the ETC to O2 or nitrite.
We characterized multiple responses of tobacco to different pathovars of the bacterial pathogen
Pseudomonas syringae. These included a compatible response associated with necrosis (pv
tabaci), an incompatible response that included the hypersensitive response (HR) (pv
maculicola) and an incompatible response that induced defenses (pv phaseolicola). We show that
the HR is accompanied by an early mitochondrial O2
- burst prior to cell death. Also, we found
iii
that the appearance of HR and the appearance of the mitochondrial O2
- burst are delayed in
transgenic plants lacking AOX. A similar delay is seen in transgenic plants treated with the
complex III inhibitor antimycin A. In Wt plants, expression of Aox1a is suppressed during the
HR response to pv maculicola despite the accumulation of signaling molecules known to induce
Aox1a transcription. Also, MnSOD activity declined during the HR. We suggest that the
mitochondrial ROS burst controlled by AOX and MnSOD is an important component for the
induction and coordination of the HR during plant-pathogen interactions.
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Bacterial Plant Pathogen Identification using Genomics and MetagenomicsSharma, Parul 18 August 2023 (has links)
The timely identification of pathogens responsible for disease outbreaks is crucial for implementing effective control measures and minimizing the spread of infectious diseases. Conventional methods of identification are limited to specific pathogen species because they require prior knowledge and pure cultures of the pathogen. Therefore, these methods cannot detect new pathogens responsible for newly emerging diseases. Computational methods that rely on sequencing data have the potential to overcome these limitations. However, the diverse phenotypes among microbial species and strains within the same species pose a challenge in accurately identifying the specific pathogen responsible for the disease. This dissertation highlights the importance of strain-level detection for the identification and characterization of pathogens by employing computational methods that rely on genomic and metagenomic sequencing data. To realize that computational goal, a comparison of different tools, currently used for metagenome classification, was done to illustrate effective detection of bacterial pathogens. To develop computational methods for characterization, genomes of the plant pathogen Ralstonia solanacearum were studied to understand the basis of virulence at cool temperatures. Finally, a new tool was developed that combines accurate detection and characterization at the strain level, through the use of taxonomic databases constructed using genome similarity thresholds. This dissertation work is a contribution to the development of improved approaches to detect and contain disease outbreaks in plants with possible applications in human and animal diseases as well. / Doctor of Philosophy / Detecting and identifying pathogens is crucial for controlling disease outbreaks in humans, animals, and plants. However, currently used methods are limited to identifying only those pathogens that can be grown in a lab. An ideal method for pathogen detection should be broadly applicable to many pathogens. A newer technique called metagenome sequencing allows us to identify known as well as unknown pathogens, including the ones that cannot be grown in a lab. This makes it possible to detect new pathogens from newly emerging diseases. Computational tools that accurately analyze the sequencing data are needed.
This dissertation highlights the importance of accurately identifying specific strains of pathogens using computational techniques based on genomic and metagenomic sequencing data. As a result, different tools were evaluated for classifying metagenomes for the successful detection of bacterial pathogens. For the characterization of specific traits responsible for causing disease, genomes of Ralstonia solanacearum, a plant pathogen, were studied to understand how some strains remain harmful at lower temperatures. The dissertation also introduces a novel metagenomic classification tool that combines accurate detection and characterization of pathogen strains by using genome similarity thresholds to create taxonomic databases. This approach improves our ability to identify and understand pathogens at a more specific level.
Overall, this research aims to enhance our ability to identify and understand pathogens, allowing for more effective measures to control and prevent disease outbreaks.
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Basis for the biocontrol of Pythium by fluorescent pseudomonadsEllis, Richard John January 1997 (has links)
The aim of this thesis was to gain an understanding of the molecular and ecological basis for the biological control of Pythium by fluorescent pseudomonads. A fluorescent pseudomonad biocontrol agent (BCA), Pseudomonas fluorescens 54/96, identified as a potential candidate for commercial development, was analysed together with transposon induced mutants in a variety of assays for anti-fungal activity (Chapter 2). It was revealed that 54/96 had a fungistatic effect generated by a number of different mechanisms, which included nutrient competition and antibiosis. The synecology of this organism with Pythium was then compared to a similar organism (P. fluorescens SBW25) demonstrating a similar degree of anti-fungal activity (Chapter 3). The similarity of the population dynamics of these two strains prompted an examination of the genetic basis for the anti-fungal activity of the second strain, with the intention of comparing with 54/96 (Chapter 4). Again this revealed a multifactorial mode of action of SBW25 against Pythium. Whilst some mutants with reduced anti-fungal activity were deficient in growth on seed exudate others were unaffected, but the mechanisms appeared to be different to those utilized by 54/96. The comparison of strains was expanded to a larger collection of pseudomonad BCAs which were contrasted by a number of phenotypic and genotypic methods (Chapter 5). Various markers were identified which showed commonality within the different classes of BCA, the most useful of which was cyclopropanated fatty acids. These may prove to be a useful marker when screening for new pseudomonad BCAs. It was concluded that a greater understanding of the molecular, physiological and ecological basis of anti-fungal activity of bacterial will lead to the development of biocontrol strategies with improved efficacy.
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Parameters affecting the production of fumonisin B1 by fusarium verticillioides in cultureKeyser, Zanephyn January 2001 (has links)
>Magister Scientiae - MSc / Fi1sarium verticillioides is a very important mycotoxin-produeing fungus associated with maize. Fverticillioides produces a group of mycotoxins known as fumonisins under suitable environmental conditions. A series of studies was designed to provide information regarding some of the factors associated with the production offumonisin B1 (FB1) in maize patties and MYRO liquid medium. Our investigation together with previous studies have detailed the important influence of several factors on the production of fumonisins by F verticillioides strains. To understand why these strains are able to produce these toxins, an investigation into the complex interaction that occurs between biotic and abiotic parameters and their impact on fumonisin production was necessary. The results reflect the interacting factors and the intraspecific differences between strains, which may also be present in field conditions. The parameters that were varied under a predetermined set of culture conditions, included initial moisture content of maize patty cultures, temperature, initial pH and the addition of the fumonisin precursors, L-alanine and L-methionineto the cultures. Investigations into the three-way interactions of initial maize patty moisture content (30 ml water to 30g of maize), L-methionine (0.3 %) and temperature (25°C), resulted in the highest yield ofFB1 (5777.26 μgig) produced by MRC 4316. In contrast, MRC 826 was negatively affected, producing lower levels ofFB1 (3492.24 μg/g), compared to MRC 4316 at an initial moisture content (20 ml water to 30 g maize), L-methionine (0.3 %) and 25 °C. An American strain of F verticillioides MRC 7424 (= NRRL 13616), produced the highest levels of FB, (116 μg/ml), while the South African isolates, MRC 4316 and MRC 826, produced lower FB1 levels (93 and 62 μg/ml, respectively) in MYRO liquid medium. In general, FB1 production in maize patty cultures far exceeded levels obtained in liquid shake cultures. It appears that not only the ability of a particular strain of F. verticillioides, but the interaction of a variety of physiological and nutritional factors and the culture medium, are important in the production of FB,. Thus, variation of a single factor such as temperature under field conditions due to seasonal change, may therefore have a major effect on fomonisin production. A chain reaction may occur when changes in moisture, pH, etc. take place, which may influence fumonisin production further. Lyophilisation of fungal cultures proves to be an excellent method to preserve a wide range of fungi over long periods of time. It is, however, necessary to determine the viability of conidia stored in lyophilised vials at 4 ° Con a regular basis. At present, plate count methods remain the most valid technique for the detection of the viability of lyophilised conidia. Membrane-permeant nucleic acid-binding dyes (FUN-I) are viability stains that are relatively new flourescent probes for assessing the viability of metabolically active yeast cells. The purpose of this study was to microscopically determine the viability oflyophilised conidia of Fusarium and A lternaria species, using the yeast, Saccharomyces cerevisiae, as a control. FUN-1 viability stain was compared to two other staining methods, i.e. ethidium bromide (EB) and methylene blue (MB) and the viability of the conidia was compared to colony-forming units (CFU) on solid media as a control. For the purpose of determining or screening for percentage viability in a specific inoculum, results indicate that EB can be used in the case of lyophilised conidia, and MB in the case of freshly harvested conidia. Although FUN-I are recommended as a good way to determine the cell viability of a fungus, it needs relatively complicated procedures and has a time limit in which the stain can be used. The result of this study emphasize that the use of dyes to determine viability of lyophilised conidia require a critical definition of protocols for a specific fungal species, and that a good correlation with CFU needs to be demonstrated. The findings of this study could find useful applications in various studies on living and dead conidial populations. The diverse toxicological effects of fumonisins m animals and plants raised the possibility that fumonisins may also inhibit the growth of filamentous fungi. This study investigated the antifungal activity of FB1 to some h1sariu111 and other fungal species. The sensitivity of these fungi was tested by an agar-diffusion method on PDA plates. FB1 inhibited the myceliaJ growth of five of the nine fungi tested. The FB1-producing Fusarium species isolated from maize, i.e. F verticil/ioides, F glohosum and F proliferatum were resistant to FB1 even though a small inhibition zone at the highest FB1 concentration of 40mM was noted in the case of F. proliferatum. However, amongst two non-producing Fusarium spp. also isolated from maize, one (F subglutinans) was resistant and one (F graminearum) was sensitive. The most sensitive fungi tested were non-producing species not isolated from maize, i.e. A lternaria alternata, Botrytis cinerea and Penicillium expansum. The minimum inhibitory concentration ofFB1 ranged between 0.25-0.SmM for A. alternata, 1-SmM for P. expansum and B. cinerea and 5-1 OmM for F. graminearum, while the other fungi tested showed no sensitivity to FB1. This is the first report on the antifungal activity ofFB1 to filamentous fungi. Another study investigated the effect of FB1 on the germination of freshly harvested conidia of Fusarium and some other fungal species. The FB1 -producing F'usarium species isolated from maize, i. e. F vertici llioides, F. globosum and F. prolifer alum showed a decrease in germ tube length with an increase in FB1 concentrations. This indicated that these fungi can tolerate their own toxic metabolite to a ce11ain extent. However, amongst the two non-fumonisin producing Fi1sarium spp. examined, i.e. F. subglutinans and F. graminearum, isolated from maize, F. subglutinans was induced to genninate faster in the presence ofFB1 but soon developed stunted germ tubes, while F graminearum developed shorter germ tubes compared to the control cultures. The most sensitive fungi tested were species not isolated from maize, i.e. A. alternata, B. cinerea and P. expansum, which did not germinate at higher FB1 concentrations at all. Statistical analyses showed that the inhibiting effect of FB1 was highly significant (P <0.001). The conidial germination bioassay was more sensitive in the detection of the antifungal activity ofFB1 than the petri dish bioassay. The minimum inhibitory concentrations of FB1 for visible mycelial growth were closely comparable to those obtained from conidial germination. Results of these studies provide considerable information on the parameters affecting the production of FB1 and will be of great benefit in further studies focussing on fumonisin prodnction.
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Characterization of two Arabidopsis thaliana genes with roles in plant homeostasisLudidi, Ndomelele Ndiko January 2004 (has links)
Philosophiae Doctor - PhD / Plants are continuously exposed to varying conditions in their environment, to which they have to adapt by manipulating various cellular processes. Environmental (abiotic) and pathogen (biotic) stress are challenges against which plants have to defend themselves. Many plant responses to stress stimuli are a result of cellular processes that can be divided into three sequential steps; namely signal perception, signal transduction m1d execution of a response. Stress signal perception is, in most of these cases, facilitated by cell surface or intracellular receptors that act to recognize molecules presented to the cell. In several cases, hormones are synthesized in response to stress signals and in turn these hormones are perceived by cellular receptors that trigger signal transduction cascades. Propagation of signal transduction cascades is a complex process that results from activation of various signaling molecules within the cell. Second messengers like calcium (Ca2+) and guanosine 3', 5'-cyclic monophosphate (cGMP) play a vital role in mediating many signal transduction processes. The result of these signal transduction cascades is, in most instances, expression of genes that contribute to the plant's ability to cope with the challenges presented to it. Plant natriuretic peptides (PNPs) are novel plant hormones that regulate water and salt homeostasis via cGMP-dependent signaling pathways that involve deployment of Ca2+. The aim of this study is to partially characterize a PNP and a guanylyl cyclase, both from Arabidopsis thaliana. Guanylyl cyclases synthesize cGMP from the hydrolysis of guanosine 5' -triphosphate (GTP) in the cell. The study also aims to investigate the effect of drought and salinity on cGMP levels in plants, using sorbitol to mimic the osmolarity/dehydration effect of drought and NaCl as a source of salinity stress and thus link NaCl and sorbitol responses to both AtPNP-A and cGMP up-regulation.
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Implications of green manure amendments on soil seed bank dynamics /Short, Nicolyn. January 2006 (has links)
Thesis(Ph.D.)--University of Western Australia, 2006.
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Evaluation of Field Pea Varieties for Resistance to Fusarium Root Rot PathogensOdom, Jennifer Lorraine January 2017 (has links)
Fusarium root rot is one of the most important diseases of pulse crops, with numerous Fusarium spp. comprising the disease complex. Fusarium solani and F. avenaceum have been reported to be major pathogens in the pea root rot complex, and all commonly grown varieties are susceptible. Greenhouse methods to evaluate peas for resistance to Fusarium root rot resulted in inconsistent disease severity across varieties. In 2015, F. avenaceum infested field plots were more heavily damaged based on emergence and yield than F. solani infested plots, and opposite trends were observed in 2016. Differences in root rot severity between years could be due to F. solani infestation causing more damage under warmer temperatures, while plots infested with F. avenaceum caused more damage under cooler temperatures. These results highlight the difficulties observed when screening for soil-borne pathogens, and the increased difficulties when a pathogen complex and changing environmental conditions are involved.
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Detection and identification of Phytophthora spp. in woody plant nurseries and holm oak forestsMora Sala, Beatriz 29 September 2021 (has links)
Tesis por compendio / [ES] Phytophthora es uno de los géneros fitopatógenos más relevantes y
agresivos en la agricultura y silvicultura. Muestreos realizados en la última
década han revelado una gran cantidad de interacciones entre especies de
Phytophthora y plantas, desconocidas con anterioridad. La introducción de
nuevos patógenos de suelo, como Phytophthora en los bosques de Fagaceae,
modifica la comunidad microbiana presente en la rizosfera, con importantes
consecuencias ambientales y económicas. El género Quercus es uno de los
géneros de Fagaceae más extendidos en Europa, y Quercus ilex es la especie
dominante en España.
El vínculo entre la dispersión de Phytophthora en los ecosistemas
naturales y las actividades del ser humano, ha sido previamente estudiado.
Numerosos muestreos en viveros y espacios públicos, mostraron la presencia de
gran diversidad de especies de Phytophthora que podían suponer una amenaza
para la producción y los ecosistemas naturales. En este contexto, se realizó un
muestreo de viveros ornamentales y forestales en cuatro comunidades autónomas
españolas, centrándose en los posibles síntomas asociados a Phytophthora en
diferentes hospedantes e incluyendo muestras de agua de los viveros. Los
resultados mostraron 17 filotipos de Phytophthora que afectan a 22 especies
vegetales incluidas en 19 géneros. Algunas de estas interacciones se citaron por
primera vez en España.
Entre los patógenos de suelo aislados en los viveros, se identificó una
gran cantidad de formas asexuales tipo Cylindrocarpon en las raíces de
hospedantes leñosos. Se caracterizó una colección de aislados mediante estudios
morfológicos y moleculares. Se identificaron 12 especies pertenecientes a los
géneros Cylindrodendrum, Dactylonectria e Ilyonectria en hospedantes
pertenecientes a 15 géneros y otras cuatro nuevas especies se describieron. El
estudio demostró la prevalencia de este grupo fúngico asociado con plántulas de
diversos hospedantes que muestran síntomas de decaimiento en viveros
forestales.
Se evaluó la susceptibilidad de Q. ilex a la inoculación con ocho especies
de Phytophthora obtenidas de muestreos en viveros. Las especies más agresivas fueron Phytophthora cinnamomi, Phytophthora cryptogea, Phytophthora
gonapodyides, Phytophthora plurivora y Phytophthora psychrophila, seguidas de
Phytophthora megasperma, mientras que Phytophthora quercina y Phytophthora
nicotianae fueron las especies menos agresivas. Los resultados obtenidos en el
ensayo de patogenicidad confirmaron que todas las especies de Phytophthora
evaluadas podrían representar una amenaza para los encinares. En este contexto,
se realizó un estudio para verificar la presencia y / o detección de especies de
Phytophthora en dos áreas de España (dehesas del sudoeste y bosque del noreste)
utilizando diferentes métodos de aislamiento y detección.
El aislamiento directo y el método de trampeo vegetal en muestras
obtenidas a partir de encinas con y sin decaimiento, identificaron Phytophthora
cambivora, P. cinnamomi, P. gonapodyides, P. megasperma y Phytophthora
pseudocryptogea en las dehesas, mientras que, en el bosque del noreste, no se
aisló Phytophthora spp. Los análisis estadísticos indicaron que no había una
relación significativa entre la frecuencia de aislamiento de las especies de
Phytophthora y la expresión de los síntomas de la enfermedad en las encinas de
las dehesas. Además, P. quercina se detectó con mayor frecuencia que P.
cinnamomi en las dos áreas estudiadas utilizando sondas TaqMan de PCR a
tiempo real.
Se evaluaron seis masas de Q. ilex ubicadas en tres comunidades
autónomas de España mediante “Next Generation Sequencing” (NGS) para tener
un mayor conocimiento sobre la diversidad de Phytophthora spp. en los bosques
de encinas. Se detectaron 37 filotipos de Phytophthora pertenecientes a los
clados 1 al 12, excepto los clados 4, 5 y 11, lo que demuestra una gran diversidad
de Phytophthora en los encinares estudiados. Los filotipos más abundantes
fueron P. quercina, P. psychrophila, P. cinnamomi y P. plurivora. / [EN] Phytophthora is one of the most relevant and aggressive plant pathogenic genus in agriculture and forestry. Due to the increasing environmental threat of invasive plant pathogens, monitoring new areas in the last decade has revealed a large number of new Phytophthora species-plant host interactions. The introduction of soilborne pathogens, such as Phytophthora in Fagaceae forests modifies the microbial community present in the rhizosphere with relevant environmental and economic consequences. The genus Quercus is one of the most extended Fagaceae genera in Europe, and Q. ilex is the dominant tree in Spain.
The link between Phytophthora dispersion in natural ecosystems and human derived activities has been previously studied. Numerous sampling in nurseries and public spaces revealed a great diversity of Phytophthora species that compromised production and threated natural ecosystems. In this context, sampling ornamental and forest nurseries in four Spanish regions was carried out focusing on possible symptoms associated to Phytophthora on different hosts and including water samples from the nurseries. The results showed 17 Phytophthora phylotypes affecting 22 plant species included in 19 plant genera and some of them reported for the first time in Spain.
Among the soilborne pathogens isolated in the nurseries, a large number of Cylindrocarpon-like asexual morphs were identified from the roots of woody hosts. A collection of Cylindrocarpon-like isolates recovered from Spanish nurseries was characterised by morphological and molecular studies. Twelve species belonging to the genera Cylindrodendrum, Dactylonectria and Ilyonectria were identified from damaged roots of 15 different host genera and other four species were newly described. The study demonstrated the prevalence of this fungal group associated with seedlings of diverse hosts showing decline symptoms in forest nurseries in Spain.
The susceptibility of Quercus ilex to the inoculation with eight Phytophthora species obtained from nurseries was evaluated. The most aggressive species were Phytophthora cinnamomi, Phytophthora cryptogea, Phytophthora gonapodyides, Phytophthora plurivora and Phytophthora psychrophila followed by Phytophthora megasperma, while Phytophthora quercina and Phytophthora nicotianae were the least aggressive species. Results obtained in the pathogenicity test confirmed that all Phytophthora species tested could represent a threat to holm oak ecosystems. In this context, a study to verify the presence and/or detection of Phytophthora species was conducted in two holm oak areas of Spain (southwestern dehesas and northeastern woodland) using different isolation and detection methods.
Direct isolation and baiting methods in declining and non-declining holm oak trees revealed Phytophthora cambivora, P. cinnamomi, P. gonapodyides, P. megasperma, and Phytophthora pseudocryptogea in the dehesas, while in the northeastern woodland, no Phytophthora spp. were recovered. Statistical analyses indicated that there was not a significant relationship between the Phytophthora spp. isolation frequency and the disease expression of the holm oak stands in the dehesas. Phytophthora quercina and P. cinnamomi TaqMan real-time PCR probes showed that P. quercina was detected in a higher frequency than P. cinnamomi in both studied areas.
A better understanding of the Phytophthora spp. diversity in holm oak forests was assessed using Next Generation Sequencing (NGS) in six Q. ilex stands located in three regions in Spain. Thirty-seven Phytophthora phylotypes belonging to clades 1 to 12, except for clades 4, 5 and 11, were detected in this study, demonstrating a high diversity of Phytophthora species in holm oak Spanish forests. The most abundant phylotypes were P. quercina, P. psychrophila, P. cinnamomi and P. plurivora.
In summary, this Thesis demonstrated a high diversity of Phytophthora and Cylindrocarpon-like species in Spanish nurseries, reporting new pathogen-plant host in / [CA] Phytophthora és un dels gèneres fitopatògens més rellevants i agressius en l'agricultura i la silvicultura. Mostrejos realitzats en l'última dècada han revelat una gran quantitat d'interaccions desconegudes fins ara entre espècies de Phytophthora i plantes. La introducció de nous patògens del sòl, com Phytophthora en els boscos de Fagaceae, modifica la comunitat microbiana present en la rizosfera, amb importants conseqüències ambientals i econòmiques. El gènere Quercus és un dels gèneres de Fagaceae més estesos a Europa, i Quercus ilex és l'espècie dominant a Espanya. El vincle entre la dispersió de Phytophthora en els ecosistemes naturals i les activitats de l'ésser humà, ja ha sigut estudiat prèviament. Nombrosos mostrejos en vivers i espais públics, van mostrar la presència d'una gran diversitat d'espècies de Phytophthora que podien suposar una amenaça per a la producció i els ecosistemes naturals. En aquest context, es va realitzar un mostreig de vivers ornamentals i forestals en quatre comunitats autònomes espanyoles, centrant-se en els possibles símptomes associats a Phytophthora en diferents hostes i incloent mostres d'aigua dels vivers. Els resultats van mostrar 17 filotipus de Phytophthora que afecten 22 espècies vegetals incloses en 19 gèneres. Algunes d'aquestes 'interaccions es van citar per primera vegada a Espanya. Entre els patògens del sòl aïllats en els vivers, es va identificar una gran quantitat de formes asexuals tipus Cylindrocarpon en les arrels de plantes llenyoses. Es va caracteritzar una col·lecció d'aïllats mitjançant estudis morfològics i moleculars. Es van identificar 12 espècies pertanyents als gèneres Cylindrodendrum, Dactylonectria i Ilyonectria en hostes pertanyents a 15 gèneres i altres quatre noves espècies es van descriure. L'estudi va demostrar la prevalença d'aquest grup fúngic associat amb plàntules de diversos hostes que mostren símptomes de decaïment en vivers forestals espanyols. Es va avaluar la susceptibilitat de Q. ilex a la inoculació amb huit espècies de Phytophthora obtingudes de mostrejos en vivers. Les espècies més agressives van ser Phytophthora cinnamomi, Phytophthora cryptogea, Phytophthora gonapodyides, Phytophthora plurivora i Phytophthora psychrophila, seguides de Phytophthora megasperma, mentre que Phytophthora quercina i Phytophthora nicotianae van ser les espècies menys agressives. Els resultats obtinguts en l'assaig de patogenicitat van confirmar que totes les espècies de Phytophthora avaluades podrien representar una amenaça per als ecosistemes d'alzines. En aquest context, es va realitzar un estudi per a verificar la presència i / o detecció d'espècies de Phytophthora en dues àrees d'Espanya (deveses del sud-oest i bosc del nord-est) utilitzant diferents mètodes d'aïllament i detecció. L'aïllament directe i el mètode de parany vegetal en mostres obtingudes a partir d'alzines, amb i sense decaïment, van identificar Phytophthora cambivora, P. cinnamomi, P. gonapodyides, P. megasperma i Phytophthora pseudocryptogea en les deveses, mentre que, en el bosc del nord-est, no es va aïllar Phytophthora spp. Les anàlisis estadístiques van indicar que no hi havia una relació significativa entre la freqüència d'aïllament de les espècies de Phytophthora i l'expressió dels símptomes de la malaltia en les alzines en les deveses. A més, P. quercina es va detectar amb major freqüència que P. cinnamomi en les dues àrees estudiades utilitzant sondes TaqMan de PCR a temps real. Es van avaluar sis masses de Q. ilex situades en tres comunitats autònomes d'Espanya mitjançant "Next Generation Sequencing" (NGS) per a tindre un major coneixement sobre la diversitat de Phytophthora spp. en els boscos d'alzines. Es van detectar 37 filotipus de Phytophthora pertanyents als clades 1 al 12, excepte els clades 4, 5 i 11, la qual cosa demostra una gran diversitat d'espècies de Phytophthora en els alzinars estudiats. Els filotipus més abundants van ser P.
quercina, P. psychrophila, P. cinnamomi i P. plurivora. / Mora Sala, B. (2020). Detection and identification of Phytophthora spp. in woody plant nurseries and holm oak forests [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/153808 / TESIS / Compendio
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