Thesis (MSc. (Horticulture)) -- University of Limpopo, 2016. / Pelargonium sidoides has numerous medicinal applications, with economic potential to serve as a future cultigen in smallholder farming systems. However, it is highly susceptible to the root-knot (Meloidogyne species) nematodes, without any identifiable nematode resistant genotypes. Nemarioc-AL and Nemafric-BL phytonematicides, with cucurbitacin A and cucurbitacin B active ingredients, respectively, are being researched and developed as an alternative to synthetic nematicides at the University of Limpopo. However, since active ingredients in phytonematicides are allelochemicals, the two phytonematicides have the potential of inducing phytotoxicity on crops protected against nematode damage. The objectives of the study, therefore, were (1) to determine the non-phytotoxic concentration of Nemarioc-AL phytonematicide on plant growth of P. sidoides, and (2) to determine the non-phytotoxic concentration of Nemafric-BL phytonematicide in plant growth of P. sidoides. Cuttings were raised in 30-cm-diameter plastic pots containing 10 000 ml steam-pasteurised river sand and Hygromix-T at 3:1 (v/v) under microplot conditions in autumn (March-May) and repeated in spring (August October) 2015. After establishment each plant was inoculated with 5 000 eggs and second-stage juveniles (J2s) of M. javanica. Six treatments, namely, 0, 2, 4, 6, 8 and 10% concentrations of each phytonematicide on separate trials were arranged in a randomised complete block design, with seven replicates. At 56 days after inoculation, in Experiment 1, Nemarioc-AL phytonematicide, treatment significantly (P ≤ 0.05) affected plant height, dry root mass and root galls, contributing 62, 69 and 70% to total treatment variation of the three variables, respectively. Relative to untreated control Nemarioc-AL phytonematicide increased plant height and dry root mass by 34 to 61% xxi and 20 to 76%, respectively, with a slight decrease by 5% in plant height at the highest concentration. However, the material decreased root galls by 5 to 50%. Significant (P ≤ 0.05) plant variables were subjected to Curve fitting-allelochemical respond dosage model, to generate biological indices which were used to compute the mean concentration stimulation point (MCSP) using the relation: MCSP = Dm + Rh/2 and the overall sensitivity value (∑k). In Experiment 1, MCSP = 6.18% and ∑k = 3. Plant variables and increasing concentration of phytonematicide exhibited quadratic relations. Treatments reduced nematode variables, at all levels including at the lowest, but the effect were not different. In Experiment 2, Nemarioc-AL phytonematicide treatment effects were not significant on plant variables except for root galls, but were significant for root nematodes except for eggs. Data for plant variables in Experiment 2 were not subjected to Curve fitting-allelochemical respond dosage model because they were not significant (P ≤ 0.05). In Experiment 1, Nemafric-BL phytonematicide treatment significantly (P ≤ 0.05) affected plant height and root galls, contributing 63 and 67% to total treatment variation of the two variables, respectively. Relatively to untreated control, plant height was increased by 10 to 36%, while root galls was reduced by 2.43 to 60%. In Experiment 1, MCSP = 2.87% and ∑k = 3. Concentrations of Nemafric-BL phytonematicide significantly (P ≤ 0.05) reduced eggs, juveniles and Pf at all levels including at the lowest, but the effect were not significant different, with treatments contributing 78, 72 and 90% to the total treatment variation. In Experiment 2, Nemafric BL phytonematicide treatment effects were not significant on plant variables except for root galls, but were significant for root. In conclusion, Nemarioc-AL and Nemafric-BL xxii phytonematicides could be applied at the lowest concentration of 2% where it was shown to be effective in suppressing population densities of M. javanica. / Agricultural Research Council (ARC), National Research Fund (NRF) , Flemish Inter university Council of Belgium and Land Bank Chair of Agriculture ─ University of Limpopo

In this study several free-living diazotrophs (FLD) were isolated and screened for their nitrogen fixing ability on a range of crops grown in greenhouse, hydroponics and field trials. Rhizosphere isolates of free-living diazotrophs (FLD) may be effective biofertilizer inoculants, and may improve plant health where crops are grown with little or no fertilizer, as is the case in the Developing World. FLD isolates from rhizospheric soils in KwaZulu-Natal were assessed by growing them on N-free media, which is a key isolation method. They were then evaluated for their nitrogenase activity by quantifying ethylene production from acetylene by gas chromatography (GC). The free living isolates that produced greater quantities of ethylene were detected by an acetylene reduction assay (ARA). These were further assessed for colony formation on N-free media with different carbon sources, and at a range of temperatures (20, 25 and 300C) and pH values (6.0, 7.0 and 8.0). Isolates G3 and L1 were identified using DNA sequencing by Inqaba Biotechnical Industries (Pty) Ltd as Burkholderia ambifaria Coenye et al, and Bacillus cereus Frankland, respectively. These isolates grew significantly better on an ethanol medium, at temperatures of 20, 25 and 300C and pHs of 6.0, 7.0 and 8.0. Isolates B3 (Burkholderia sp.) and D6 (Bacillus cereus Frankland) also grew well on an ethanol medium, but only at 200C and at a pH of 6.0 and 7.0, respectively, while Isolate E9 (Burkholderia cepacia Frankland) grew well on an ethanol medium only at 300C, and pH 6.0 and 7.0. Temperature and pH strongly influence FLD growth on N-free media using different carbon sources. Further trials were conducted to screen the best isolates under greenhouse condition, using both seed treatments and drenching application techniques onto several crops. The drenching application resulted in an increase in the growth and N-total of all the evaluated crops, relative to an unfertilized control. Growth and N-total of maize and sorghum increased with seed treatments, but did not increase the growth of lettuce and zucchini. Drenching of FLD isolates at 106cfu ml-1, applied on weekly basis, resulted in an increase in the growth of lettuce. Increased doses and frequency of application of the FLD bacteria resulted in a decrease in lettuce growth. This led to the conclusion that application of FLD bacteria at high doses and short intervals may create a situation where the applied FLD bacteria and the resident rhizosphere microbes compete for root exudates. High doses at low frequencies and low doses at high frequencies may be more effective on lettuce. Inoculation of Isolate L1 (B. cereus) at 106cfu ml-1 or in combination with Eco-T® (Trichoderma harzianum Rifai), significantly increased growth of lettuce. This result may have been due to nitrogen fixation, or to secretion of growth promoting substances by both the FLD and T. harzianum, and to biocontrol effects of Eco-T®. Application of Isolate L1 (B. cereus) at 106cfu ml-1 with or without Eco-T® was an effective tool for enhancing plant growth and nitrogen fixation. An FLD, Isolate L1 (B. cereus), was applied to lettuce plants together with a complete hydroponics fertilizer at 25% strength (Ocean Agriculture 3:1:3 (38) Complete), with the N level at 25mg l-1. These plants grew significantly better than the control plants grown on 25% of normal NPK fertilization, or with an inoculation of L1 alone. This indicates that it may be possible to integrate FLD applications with the application of low levels of commercial fertilizers, which is what resource poor farmers can afford. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2008.

This thesis is focused on description of superabsorbents with controlled released of nutrients, specifically macronutrients nitrogen, phosphorus and kalium. Superabsorbents are polymers, mostly acrylic acid polymers, that can absorb huge amount of water without dissolving in it. In its structure they can hold water and thanks to this they are very perspective materials for agricultural usage. Experimental part was focused on growing corn with use of superabsorbents and control samples without use of superabsorbents. Plants were growth for 3 time periods, specifically 46, 60 and 74 days. During the experiments, plats were growth without water stress and in controlled conditions in growing box under UV lamp that simulated day and night by turning on and off after 12 hours. At the end, an image analysis was performed in HARFA program, from which we got information about branching of the roots. Results were supplemented by soil and plants analysis.

This study examines field cropping constraints for domestication of an endangered, wild medicinal plant, Siphonochilus aethiopicus, (Schweif.) B.L. Burt. Extensive literature review and careful observations of plant growth behavior during two years of crop trials overturned several long-held but erroneous claims that have consistently appeared in the scholarly literature, and revealed previously undocumented plant growth characteristics. S. aethiopicus (Schweif.) B.L. Burt. is a rhizomatous corm, not a rhizome. Field growth observations demonstrated clearly that the false stem and leaves grow continuously from emergence in September to senescence in April-May; the corm retains its tuberous roots during winter senescence, and is genetically preprogrammed to shoot in September. Flowers may emerge throughout the growing season (not only initially prior to shoot emergence), typical leaf count is 11-15, not 6-8 as previously reported, numbers that remain constant even when the plant height increases by 20-30% under shade, and leaf distichy is independent of the sun’s course and is unaffected by mother corm orientation. S. aethiopicus proved to be unusually resistant to common field diseases and pests, and resilient to severe hail. The responses of S. aethiopicus were tested in a series of field trials to the effects of levels of compost, field spacing, size of planting material, addition of biocontrol agents, different degrees of shading, and factorials of the macronutrients Nitrogen, Phosphorous and Potassium. Spacing-Composted chicken litter combinations were tested in 2005-2006 in factorial combination with Spacing at 15 cm-4.5 kg ha-1, 20 cm-7.5 kg ha-1, 30 cm-10 kg ha-1, and 40 cm-15.5 kg ha-1, and these treatments were randomized with 4 Corm planting sizes (height by base diameter in mm): Small (S, 12.38 mm x 12.6 mm), Medium Small (MS, 29.65 mm x 27.93 mm), Medium Large (ML, 38.48 mm x 37.78 mm) and Large (L, 52.37 mm x 44.10 mm). 2005-2006 ANOVA tests showed significant differences between Spacing-Compost and Corm Size for the total harvest biomass measure, with 30 cm and 40 cm spaces better than 15 cm spacing, and Corm Size MS, ML and L all better than S, and ML better than MS. Total Corms harvested per block and ii Survival Percentage were similarly significant for Corm Size, but not Spacing. Corms smaller than the Small criteria were raised separately, under optimal conditions in a nursery. In a separate 2005-2006 Compost-only trial ANOVA tests did not find significant differences between compost levels. In 2006-2007 we tested Spacing separately at 5, 10, 15, 20, 30 and 40 cm between planted corms in each plot. We tested Compost levels separately, with 0, 5, 10 and 15 kg ha-1 compost per plot. In 2006-2007 only the ML and L sizes were used in an even mix. There were no significant differences between treatments due to high experimental error, but measurement across all production parameters showed a clear trend towards best performance at spacing between 20 and 40 cm. Overall the results from the Spacing, Compost-level and Corm Size trials suggest that 30 cm is perhaps the optimal field spacing, higher compost levels tend to give better results, and the ML and L corm sizes perform better in open-sun field trials. These parameters are recommended for further field studies and production. The effects of two commercial strains of Trichoderma spp were tested at recommended doses applied to S. aethiopicus. T. harzianum Strain B77 was used as a drench at planting in comparison with a Control and a fungicide in 2005-2006. There were no significant differences between treatments for Harvested Biomass or Survival Percentage. B77 did perform significantly better than the Fungicide in the Total Corm measurement, but neither treatment was significantly different from the Control. In sum, there was a weak trend towards a greater number of output corms as a result of the application of the biocontrol agent. In both 2005-2006 and 2006-2007 we tested T. harzianum Strain kd applied as a drench at planting, with a second drench at 4 weeks. In 2006-2007 there were no significant differences between treatments, but the trend was towards better performance as a result of the drench at planting only. In 2005-2006 open field trials had shown that S. aethiopicus is susceptible to sunburn and Erwinia soft rot when grown in the full sun. Therefore, we tested the effect of various shadecloth densities and colours on production performance in 2006-2007. Treatments were Control (full sun), 40% White (TiO2) (23% shade), 40% Grey (28-30% shade), Light Black (40%), Medium Black (50%), Dark Black (80%), and Red (40%). There were no significant differences between treatments, but the trends indicated that the Control (full sun) and Dark Black (80% shade) performed the worst. Colour of shade did not appear to be important, and plants under all the shadecloths with 40-50% shade grew best. In a factorial trial different levels of Nitrogen, Phosphorous, and Potassium (NPK)were tested, over two seasons. Four levels of each input were used: N at 0 (Control), 40 kg ha-1 (N1), 80 kg ha-1 (N1), and 120 kg ha-1 (N3). P levels were 0 (Control) 60 kg ha-1 (P1) ,120 kg ha-1 (P2) and 200 kg ha-1 (P3). K levels were 0 (Control), 100 kg ha-1 (K1), 200 kg ha-1 (K2), and 400 kg ha-1 (K3). In 2005-2006 there were no significant differences between treatments. In 2006-2007 data there were significant results for Nitrogen only within each repetition. However, significance disappeared when combining across repetitions. We then ran a Bootstrap re-sampling analysis of both 2005-2006 and 2006-2007 data (data were analyzed separately because of different plot sizes and corm numbers in the two years), looking at the optimal level of each macronutrient tested against all combinations of the other two. Though significant results were obtained for each individual level of each macronutrient against the others in combination, the difference between the confidence intervals was not significant. However, there was a clear trend: the optimum N levels were between 40 and 80 kg ha-1; optimum P level was 0 (the Control) and optimum K levels were between 100 and 200 kg ha-1. Tests of handling during harvest, storage, and planting yielded additional useful information for small scale commercial farmers. The optimal harvest time is May, when the false stem and leaves are senescing and yellow, but still upright and visible. Harvest is facilitated by moistening the soil to minimize breaking off of tuberous roots, with simple field washing to remove compacted soil highly recommended. Harvested corms and tuberous roots should be stored under air-restricted, cool conditions because the tuberous roots contain high moisture and will shrivel quickly when left exposed to air, and excessively dried corms will eventually die. Senesced mother corms should be discarded at harvest. Corms are genetically preprogrammed to shoot, so should be planted in September in soft soil, with 1-2 cm of soil coverage. The studies provide a framework for developing the basic agronomy for the domestication and commercial crop production of an endangered medicinal plant species. / Thesis (M.Sc.Agric.)-University of KwaZulu-Natal, Pietermaritzburg, 2011.

Fire, natural or of anthropologic origin is a recurrent phenomenon in South African mesic grasslands. The species composition of these grasslands is sensitive to fire frequency and there exists a permanent fire-species relationship syndrome. The shift follows a general trend where, in the absence of fire for longer periods, the native grass species, possibly the most economically important grass species, give space to relatively less desirable and invasive species accompanied by significant decline in basal cover. Though much is known as to how the floristic composition of the grassland changes in response to fire, the underlying mechanisms responsible for changes in plant vigour and species composition are not fully understood. There exists limited information on germination requirements of the local flora and how recruitment of the species is influenced by fire, fire-related factors and the interaction of these factors among themselves is virtually unknown. Since the discovery by DE LANGE and BOUCHER (1990), plant-derived smoke is being widely studied as an important germination cue and the theme has been the subject of intense experimental research and theoretical work. Germination studies conducted on South African Fynbos, Californian Chaparral, and Australian species have illustrated the widespread ability of plant-derived smoke in promoting germination of species from both fire and non-fire prone habitats. Studies have also showed that plant-derived smoke plays a significant role in vegetative growth of many plants including horticultural and agricultural crops, though mechanisms of smoke action in enhancing germination and promoting plant growth are still under active research. This study sought to gain insight into the role of fire and fire-related cues and other related factors on germination and seedling growth of key grass species from fire-prone grassland in South Africa. In this study, various investigations were conducted on different aspects related to smoke-induced seed germination. Furthermore, in depth examinations were conducted on the effects of fire-related factors such as smoke, heat, soil and nutrients on seed germination and seedling growth of representative key mesic grassland species from South Africa. Laboratory-based germination and vigour experiments were conducted using smoke solutions. The aim was to examine if the strong fire-species relationship syndrome we encounter in post-fire mesic grassland in South Africa is related to the effect of plant-derived smoke on germination and seedling growth. In addition, the interaction of plant-derived smoke solutions with temperature was examined by incubating seeds at a range of temperatures. Treating seeds with smoke-water and butenolide, the germination rate (GR) and final germination percentage (FGP) were greater in 3 of the 6 species. Themeda triandra Forssk. and Tristachya leucothrix Trin. ex Nees showed the greatest response, with final germination increased from 43% to 67% and 35% to 63% respectively. These smoke solutions have also significantly enhanced germination in Eragrostis tef (Zucc.) Trotter from 62% to 80%. The degree of responsiveness varied from species to species and across different temperatures. Findings from this study suggested that plant-derived smoke and its interaction with temperature significantly influence the germination and seedling growth of the South African mesic grassland species, which can further impact on the grassland composition. To characterise the role of plant-derived smoke on certain economically important seed traits, the effect of smoke-water and a smoke-isolated butenolide on seed germination and seedling growth of Eragrostis tef (grass species which has moderately good tolerance to east African drought) was investigated at a range of temperatures, light conditions and osmotic potentials. Smoke-water (1:500 v/v) and butenolide (10ˉ⁸ M) treatment of the seeds increased percentage germination, seedling vigour and imbibition from high to low osmotic potential. These results suggested that smoke solutions have characteristics with overriding effects toppling stresses exerted from high temperature and low osmotic potential, thereby widening the temperature and moisture zone over which germination can occur. Furthermore, these findings suggested that the mode of smoke action in promoting seed germination is likely to be linked to the role of smoke in facilitating water uptake by seeds (imbibition). A simple and rapid bioassay was implemented to detect the germination activity of extracts from soils in pre/post-burn status. Soil samples taken from burnt, unburnt and adjacent plots at depths of 0-2, 2-4, 4-6 and 6-8 cm before and after burning mesic grassland in South Africa were analysed for germination activity over an eight-week period. Soil samples were extracted using dichloromethane and bioassayed using Grand Rapids lettuce (Lactuca sativa L.) achenes. The Grand Rapids lettuce seeds exhibited several-fold greater germination percentages when treated with extracts from burnt soil compared to the other plots. The magnitude of such an activity declined through time since burn. The Grand Rapids lettuce seeds also showed significantly greater germination percentage when treated with unburnt soil extracts compared to the control (distilled water) which indicates the existence of other factors controlling germination in unburnt soil. Germination percentage was negatively influenced in the adjacent plots which reflected the inhibitory role of smoke on adjacent plots neighbouring the burn. Findings from this study suggested that the germination activity of a burning plant-material (smoke) indeed diffuses into the soil and its persistence declines with time. Furthermore, the findings implied that fire and smoke may significantly influence the germination of the soil seed bank of mesic grassland in South Africa. The effect of smoke solutions of various concentrations and their interaction with soil macronutrients NPK in influencing seedling growth of three selected grass species namely, Eragrostis curvula, Panicum maximum and Themeda triandra was investigated. These grass species were selected on the basis of the contrasting response they previously showed to smoke treatments. Results showed that the interaction between species, treatment and nutrients for seedling vigour index was highly significant (P < 0.001). In the absence of NPK elements, the smoke solutions generally enhanced seedling growth in Themeda triandra, while suppressing seedling vigour indices of Eragrostis curvula and Panicum maximum. It is ecologically significant that not only smoke but also its interaction with soil macronutrients appears to be important in structuring the post-fire regeneration and colonisation processes. To examine the effect of fire-associated cues of smoke and high temperature on germination and seedling emergence from the mesic grassland soil seed bank in South Africa, and disentangle responsible factors, the effect of heat and smoke-water on seedling emergence and the resultant effect on biomass production was examined in a greenhouse tray experiment over 90 days. Soil seed bank samples obtained from 0-5 cm top soil were treated with smoke-water solution (SW 1:500 v/v), heat (H = 100 °C for 15 min) and heat + smoke-water (H = 100 °C for 15 min + SW = 1:500 v/v) combined. Significantly, the highest number of seedlings emerged from soil seed bank samples treated with heat + smoke-water combined followed by smoke-water alone. Heat + smoke-water treatment of soil seed bank samples also significantly enhanced the rate of seedling emergence and total dry biomass production. Heat treatment by itself was not statistically different from the control in many respects. Generally, these results suggest that both heat and smoke are important germination cues and play a curial role on germination and seedling emergence from the mesic grassland soil seed bank. A greater number of fire-loving Themeda triandra seedlings emerged from soils treated with smoke, though this was not statistically significant. Seedling emergence indicators showed that seedling emergence was favoured more by smoke and smoke + heat treatments compared to the control. Seedling growth indicators also showed that soil samples treated with smoke or smoke + heat combined produced significantly higher biomass than untreated samples. In general, findings from this comprehensive study suggest that plant-derived smoke and its interaction with temperature (heat) and soil nutrients significantly influences seed germination and seedling growth of South African mesic grassland species differently, this can further influence the grassland composition. The association of certain fire-climax species with the re-occurrence of fire can partly be explained due to the association of such species with fire-induced changes in the habitat. Post-fire conditions of low nutrient (NPK) availability, presence of high heat and smoke cues in the habitat may favour the competitive ability of native short and smoke-responsive species such as Themeda triandra and Tristachya leucothrix over those characteristic species of fertile habitats such as Eragrostis curvula and other non-smoke-responsive species. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2010.

Nine-week-old yellow-poplar and green and white ash were exposed to various concentrations of O₃ (0.00 to 0.15 ppm) and/or SO₂ (0.08 ppm), 4 hr/d, 5d/wk in combination with simulated rain (pHs 5.6, 4.3, 3.0), 1 hr/d, 2 d/wk, for 5 or 6 wk under controlled laboratory conditions. Pollutant exposures resulted in alterations in seedling biomass accumulation, growth rates, changes in carbon allocation among plant parts and modification in physiological processes associated with gas exchange. Ozone (0.010 ppm) and SO₂ together caused a significant decrease in height growth and biomass and an increase in leaf area ratio (LAR) in yellow-poplar. Ozone and SO₂ exposures resulted in linear decreases and increases, respectively, in root dry weight, leaf area increase, relative growth rates of all yellow-poplar plant parts and unit leaf rate with decreasing rain pH. Chlorophyll content increased in both O₃ and SO₂ treatments with increasing rain acidity. In green and white ash experiments height growth was inhibited by O₃, SO₂ and O₃ + SO₂ for green ash, whereas only leaf dry weight was decreased by O₃ exposure in white ash. Decreasing rain pH resulted in linear decreases in root/shoot ratio (RSR) and LAR, for white ash. In green ash, a quadratic response to rain pH occurred with these growth variables. Ozone and O₃ + SO₂-treated green ash exhibited a significant quadratic response in leaf weight ratio with increasing rain acidity. Leaf area ratio and RSR exhibited linear increases and decreases, respectively, for O₃ and rain acidity. In SO₂-treated white ash with increasing white ash and yellow-poplar seedlings exposed to various O₃ concentrations and simulated rain for 5 and 6 weeks, respectively, increasing O₃ concentrations caused linear decreases in height and biomass of white ash. Linear decreases in root growth rate and biomass and RSR occurred with decreasing rain pH, across O₃ treatments. Ozone (0.05 or 0.10 ppm) caused linear decreases in these variables in combination with increasing rain acidity. For yellow-poplar, increasing O₃ concentrations caused linear increases in RSR and specific leaf area. At 0.05 and 0.10 ppm O₃, stem and leaf biomass, their relative growth rates and leaf area all decreased with decreasing rain pH. Ozone (0.10 ppm) exposure caused a decrease in stomatal conductance, and decreasing variable. rain pH resulted in a linear decrease in this A linear decrease in net photosynthesis also occurred with increasing rain acidity in O₃-treated (0.10 ppm) plants. These results demonstrate that gaseous pollutants in combination with simulated acid rain can have detrimental effects on growth of three forest tree species, under controlled laboratory conditions. / Ph. D.

Plants are fundamental to life on earth, crucially providing the basis of our food supply. As world population continues to grow, so too does the pressure on our agricultural systems, with one of the biggest challenges being the control of plant pathogens to ensure a healthy crop. The interaction between plant and pathogen is complex, with subtleties at the molecular level dictating the boundary between health and disease. This is exemplified by pathogen effectors; secreted proteins which enter the plant cell and interact with host targets to facilitate infection. AVR2 is one such effector, secreted by the oomycete pathogen Phytophthora infestans; the pathogen responsible for potato late blight. AVR2 interacts with a family of kelch-repeat containing phosphatases in potato, the BSLs, implicated in brassinosteroid pathway signalling – a major hormone signalling pathway in plants associated with growth and development. This work investigates the role of AVR2 and its host targets in pathogen virulence, with focus on the link between the brassinosteroid pathway and immunity in S. tuberosum. StBSL1 is shown to be a ‘susceptibility factor’ in P. infestans infection – a host protein with a positive effect on pathogen virulence. AVR2 stabilises BSL1 in planta, and both AVR2 and BSL1 are shown to suppress primary defence responses in the plant. Transcriptional analysis of brassinosteroid-treated S. tuberosum is used to identify a set of marker genes for active BR signalling. Strikingly, AVR2 is shown to upregulatethis pathway, and specifically upregulates the transcription factor StHBI1-like, identified as a suppressor of immunity. These findings reveal a novel mechanism in oomycete effector biology; the exploitation of crosstalk between the brassinosteroid pathway and immune signalling in plants.

Protein phosphorylation is a key cellular regulatory mechanism. Phosphorylation can either activate or inhibit the function of a particular protein. Activation of protein kinases has been implicated in response to light, pathogen attack, growth regulators, stress and nutrient deficiency in plants. Most of the intracellular signaling pathways use protein phosphorylation to create signals and conduct them further. Identification of the physiological substrates for the protein kinase enables the understanding of how the signaling networks function and how they are disturbed under adverse conditions. Identification of the physiological substrates for the kinase is limited by the low stoichiometry of protein phosphorylation inside the cell. Although, recent advances in mass spectrometric techniques have increased the identification of phosphorylated protein in the cell, the precise connection between the kinase and identified phosphorylated protein is not established. Dual-specificity kinases that phosphorylate on serine, threonine and tyrosine residues have been identified and characterized in plants. However, the in vivo substrates for most of these kinases have not been identified. Recently a manganese-dependent dual-specificity STY protein kinase (STYK) has been identified from Arabidopsis thaliana which has been suggested to play a role in plant growth, development and in systemic acquired resistance. The identification of the physiological substrate for AtSTYK may help in understanding the signal transduction pathway the kinase in involved and how it is perturbed in different physiological condition. Therefore, the main objectives of my current study are,  To identify the physiological substrates of the AtSTY dual specificity kinase (STYK). 1) Identification of the substrates by using genetic, proteomic and biochemical approaches. 2) Biochemical characterization of the substrate phosphorylation. 3) Identifying the biochemical function of the substrate protein. 4) Assessing the significance of substrate phosphorylation.