Dissertation (Ph.D.)--University of South Florida, 2007. / Title from PDF of title page. Document formatted into pages; contains 131 pages. Includes vita. Includes bibliographical references.

Amyloid is defined as extracellular protein aggregates with a characteristic fibrillar ultra-structure, Congo red affinity and a unique x-ray diffraction pattern. At present, 25 different human amyloid fibril proteins have been identified, and amyloid aggregation is associated with pathological manifestations such as Alzheimer’s disease, spongiform encephalopathy and type 2 diabetes. Amyloid aggregation triggers apoptosis by incorporation of early oligomers in cellular membranes, causing influx of ions. Amyloid is the only visible pathological islet alteration in subjects with type 2 diabetes, and islet amyloid polypeptide (IAPP) is the major islet amyloid fibril component. IAPP is produced by beta-cells and co-localized with insulin in the secretory granules. Both peptides are synthesised as pro-molecules and undergo proteolytic cleavage by the prohormone convertase 1/3 and 2. Although IAPP is the main amyloid constituent, both proIAPP and proIAPP processing intermediates have been identified in islet amyloid. The aim of this thesis was to study the role of impaired processing of human proIAPP in early islet amyloidogenesis. Five cell lines with individual processing properties were transfected with human proIAPP and expression, aggregation and viability were studied. Cells unable to process proIAPP into IAPP or to process proIAPP at the N-terminal processing site accumulated intracellular amyloid-like aggregates and underwent apoptosis. Further, proIAPP immunoreactivity was detected in intracellular amyloid-like aggregates in betacells from transgenic mice expressing human IAPP and in transplanted human beta-cells. ProIAPP was hypothesized to act as a nidus for further islet amyloid deposition, and to investigate this theory, amyloid-like fibrils produced from recombinant IAPP, proIAPP and insulin C-peptide/A-chain were injected in the tail vein of transgenic mice expressing the gene for human IAPP. Pancreata were recovered after 10 months and analysed for the presence of amyloid. Both IAPP and proIAPP fibrils but not des-31,32 proinsulin fibrils, caused an increase in affected islets and also an increase of the amyloid amount. This finding demonstrates a seeding capacity of proIAPP on IAPP fibrillogenesis. IAPP has been known for some time to trigger apoptosis in cultured cells, and a novel method for real time detection of apoptosis in beta-cells was developed. Aggregation of recombinant proIAPP and proIAPP processing intermediates were concluded to be inducers of apoptosis as potent as IAPP fibril formation. From the results of this study, a scenario for initial islet amyloidogenesis is proposed. Initial amyloid formation occurs intracellularly as a result of alterations in beta-cell processing capacity. When the host cell undergoes apoptosis intracellular proIAPP amyloid becomes extracellular and can act as seed for further islet amyloid deposition.

Diss. (sammanfattning) Umeå : Umeå universitet, 2010.

Abstract Rheumatoid arthritis (RA) is an autoimmune disease causing inflammation of synovial joints, which may lead to permanent changes in cartilage and bone tissues. RA patients have antibodies binding to citrullinated and also to carbamylated proteins. Antibodies binding to citrulline are associated with more severe disease progression and may already appear years before clinical disease onset. Citrulline and the lysine carbamylation product, homocitrulline, are similar in structure. Citrullinated proteins have been studied in RA and in neurological diseases, but researchers have been unaware of the effect of homocitrulline in citrulline detection methods. The purpose of the present study was to clarify the features of protein-bound citrulline and homocitrulline in relation to research done on citrullination and in immunological reactions related to rheumatoid arthritis. In the first study of this thesis the confounding role of homocitrulline in citrulline detection was shown. In the first and second study the features of experimentally induced antibodies were assessed. The antibodies induced with citrulline- and homocitrulline-containing protein structures were shown to react both with the ureido groups and the protein structures. The antibodies were able to distinguish between citrulline and homocitrulline in the same sequence even though binding to both. In the third study the simultaneous presence of citrulline and homocitrulline in RA synovial tissue was shown. In conclusion, considering the simultaneous presence of citrulline and homocitrulline and the binding features of the experimentally induced antibodies, homocitrulline could have a yet unsolved role in RA. Secondly, the existence of homocitrulline should be borne in mind in studies on citrullination. / Tiivistelmä Nivelreuma on niveltulehduksen aiheuttava autoimmuunitauti, joka voi johtaa pysyviin muutoksiin nivelen rusto- ja luukudoksessa. Nivelreumaa sairastavilla esiintyy vasta-aineita sitrullinoituneita ja karbamyloituneita proteiineja vastaan. Sitrulliiniin sitoutuvia vasta-aineita voi esiintyä elimistössä jo vuosia ennen taudin puhkeamista, ja niiden esiintyminen on yhdistetty vaikeampaan taudinkuvaan. Sitrulliini ja lysiinin karbamylaatiotuote homositrulliini ovat rakenteellisesti samankaltaisia. Proteiinien sitrullinaatiota on tutkittu nivelreumassa ja neurologisissa taudeissa, mutta homositrulliinin olemassaoloa tai sen vaikutusta tutkimusmenetelmiin ei ole huomioitu. Tämän tutkimuksen tarkoituksena oli selvittää proteiineihin sitoutuneiden sitrulliinin ja homositrulliinin ominaisuuksia aikaisempiin tutkimuksiin ja nivelreuman immunologisiin reaktioihin liittyen. Tässä tutkimuksessa homositrulliinin osoitettiin häiritsevän sitrulliinin tunnistamista. Ensimmäisessä ja toisessa osatyössä aiheutettiin kokeellisesti vasta-aineita sitrulliinia ja homositrulliinia sisältävillä proteiinirakenteilla. Vasta-aineiden havaittiin reagoivan sekä ureidoryhmän että proteiinirakenteen kanssa. Vasta-aineet pystyivät erottamaan sitrulliinin ja homositrulliinin toisistaan samassa rakenteessa, vaikka sitoutuivat kumpaankin. Kolmannessa osatyössä osoitettiin, että sitrulliinia ja homositrulliinia esiintyy samanaikaisesti nivelreumapotilaan tulehtuneessa nivelkalvossa. Tutkimus osoitti, että sitrulliinin ja homositrulliinin samanaikainen esiintyminen ja kokeellisesti aiheutettujen vasta-aineiden ominaisuudet huomioiden homositrulliinilla voi olla jokin toistaiseksi selvittämätön rooli nivelreumassa. Homositrulliinin olemassaolo on syytä huomioida sitrullinaatiota tutkittaessa.

O estudo de venenos de artrópodes é de grande interesse para melhorar os tratamentos contra envenenamentos e oferece uma ótima ferramenta para melhor compreensão dos sistemas nervoso e imunológico, coagulação sanguínea e respostas inflamatórias. As abelhas são um dos animais venenosos mais estudados e a elucidação do seu proteoma é de interesse na elucidação de reações tóxicas e alérgicas a ferroadas. O número de acidentes envolvendo estes insetos é crescente, tendo ultrapassado 20.000 notificações entre 2001 e 2006 em todo o país e, apesar disso, não há um tratamento específico para estas vítimas, nem mesmo uma identificação completa dos antígenos presentes nesse veneno. O perfil protéico descrito até então apresenta cerca de 40 proteínas. O objetivo deste trabalho foi identificar o perfil protéico do veneno de abelhas utilizando a união da abordagem proteômica e da cromatografia de afinidade. Identificar também as proteínas alergênicas deste veneno e algumas modificações pós-traducionais como fosforilação e glicosilação. Além disso, um soro antiveneno específico foi produzido e sua ação neutralizadora testada. O veneno de abelhas foi separado por cromatografia de afinidade utilizando o soro antiveneno imobilizado em coluna de Sepharose 4B. Para identificação das proteínas foram utilizadas técnicas de 2D-SDS-PAGE, MALDI TOF/TOF e nanoESI-LC/MS-MS. Ensaios de Western Blotting foram realizados para identificar as proteínas alergênicas e fosforiladas. A utilização da cromatografia de afinidade permitiu a identificação 2 de proteínas pouco abundantes. Foram identificadas 54 proteínas, dentre as quais 9 nunca haviam sido descritas neste veneno, como MRJP-2, alfaglicosidase, transferinas, proteases, quinases e um inibidor de protease. Após a identificação destas proteínas foi possível propor um provável mecanismo de ação deste veneno. Dentre as proteínas identificadas como alergênicas, a MRJP-8 foi identificada pela primeira vez, juntamente com fatores relacionados ao PDGF e VEGF. Os resultados dos ensaios de neutralização de atividades citotóxicas, hemolíticas e miotóxicas mostraram a eficiência do soro antiveneno produzido. Chegou-se a um volume de 5,7 mL de soro antiveneno necessários para neutralizar a ação tóxica provocada por 100 ferroadas de abelhas. Este valor está na mesma faixa de eficiência dos melhores antivenenos (ofídicos, aracnídicos e escorpionídicos) produzidos no Brasil e no mundo. O lote de soro antiveneno produzido mostrou resultados satisfatórios para ser utilizado nos testes clínicos / The aim of this work was to identify the protein profile of honeybee venom, and detect allergenic proteins and post-translational modifications. Furthermore specific antivenom was produced and potency tests were performed in order to check its power of neutralization of toxic activities of venom. They were identified 54 proteins, 9 that have never been reported before in this venom. After identification of these proteins it was possible to outline a feasible mechanism of action of venom. For the first time MRJP-8, transferrin, PDGF and VEGF factors were identified as allergenic. Results of neutralization of citotoxic, hemolytic and myotoxic activities showed the efficacy of antivenom that had satisfactory results to be tested in clinical assay

Jiang, Lili. / Thesis (Ph.D.)--Chinese University of Hong Kong, 2011. / Includes bibliographical references (leaves 215-235). / Electronic reproduction. Hong Kong : Chinese University of Hong Kong, [2012] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Abstract also in Chinese.

In this study, the brain of senescence accelerated mouse prone 8 (SAMP8) mice model was adopted to investigate PTMs state (especially methylation patterns) of core histones (H2A, H2B, H3 and H4). Seven methylated sites (H3K24, H3K27, H3K36, H3K79, H3R128, H4K20 and H2A R89) were detected by tandem matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF/TOF MS) analysis. The methylation of H3K27 and H3K36 demonstrated a modulating relationship and methylated H3K27 might contribute to the hypermethylation state and gene repression in aged brain. Western blotting results showed that mono-methylated H4K20 decreased during SAMP8 mice aging and di-methylated H3K79 decreased in the brain of 12-month-old SAMP8 mice compared with age-matched senescence accelerated-resistant mouse (SAMR1) control. Di-methylated H3K79 could express in neuron cells of cerebral cortex and hippocampus. Whereas, the number of H3K79 methylation negative cells was higher in the cortex of 12-month old SAMP8 mice than that of age-matched control SAMR1 mice. Chromatin immunoprecipitation (ChIP) result indicated homeodomain transcription factor Pbx1 isoform 1 (Pbx1), transcription factors and transcriptional regulator proteins, such as T-box isoform 20, TetR family precursor BAZ2B and ribosomal protein, were recruited to methylated H3K79 site. Therefore, a model of methylated H3K79 on gene transcriptional regulation was proposed. Furthermore, the consequences of decreased H3K79 methylation in Neuro-2a (N2a) cells were investigated via transfection with Dot1 (disruptor of telomeric silencing) siRNA. After transfection, N2a cells displayed shorter neurite and less dendrite. Proteomic change in the N2a cells provided convincing evidence for the multi-function of decreased H3K79 methylation on transcriptional regulation, protein translation and folding, stress response and DNA breaks repair, which would contribute to brain dysfunction during neurodegenerative disease or aging. / Nowadays, many countries including China are experiencing aging populations. Aging has become the major risk factor for many diseases, such as neurodegenerative disease. The studies on the role of epigenetics in the aging process have grown tremendously in recent years. However, no systematic investigations have provided the information on histone post-translational modifications (PTMs) in aged brain and the roles of histone PTMs in brain aging are still unknown. / This study gave a new insight into the link between histone PTMs and brain aging. It could provide the experimental evidence for future studies and help us to better understand aging or neurodegenerative disease at epigenetic level. Furthermore, it could benefit for setting up the strategies for epigenetic therapy to neurodegenerative disease. / Wang, Chunmei. / Adviser: Ngai Saiming. / Source: Dissertation Abstracts International, Volume: 73-01, Section: B, page: . / Thesis (Ph.D.)--Chinese University of Hong Kong, 2009. / Includes bibliographical references (leaf 136). / Electronic reproduction. Hong Kong : Chinese University of Hong Kong, [2012] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Electronic reproduction. [Ann Arbor, MI] : ProQuest Information and Learning, [201-] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Abstract also in Chinese.

Thesis (Ph. D.)--University of Virginia, 2007. / Includes bibliographical references. Also available online through Digital Dissertations.

Diss. (sammanfattning) Stockholm : Karolinska institutet, 2007. / Härtill 4 uppsatser.

O estudo de venenos de artrópodes é de grande interesse para melhorar os tratamentos contra envenenamentos e oferece uma ótima ferramenta para melhor compreensão dos sistemas nervoso e imunológico, coagulação sanguínea e respostas inflamatórias. As abelhas são um dos animais venenosos mais estudados e a elucidação do seu proteoma é de interesse na elucidação de reações tóxicas e alérgicas a ferroadas. O número de acidentes envolvendo estes insetos é crescente, tendo ultrapassado 20.000 notificações entre 2001 e 2006 em todo o país e, apesar disso, não há um tratamento específico para estas vítimas, nem mesmo uma identificação completa dos antígenos presentes nesse veneno. O perfil protéico descrito até então apresenta cerca de 40 proteínas. O objetivo deste trabalho foi identificar o perfil protéico do veneno de abelhas utilizando a união da abordagem proteômica e da cromatografia de afinidade. Identificar também as proteínas alergênicas deste veneno e algumas modificações pós-traducionais como fosforilação e glicosilação. Além disso, um soro antiveneno específico foi produzido e sua ação neutralizadora testada. O veneno de abelhas foi separado por cromatografia de afinidade utilizando o soro antiveneno imobilizado em coluna de Sepharose 4B. Para identificação das proteínas foram utilizadas técnicas de 2D-SDS-PAGE, MALDI TOF/TOF e nanoESI-LC/MS-MS. Ensaios de Western Blotting foram realizados para identificar as proteínas alergênicas e fosforiladas. A utilização da cromatografia de afinidade permitiu a identificação 2 de proteínas pouco abundantes. Foram identificadas 54 proteínas, dentre as quais 9 nunca haviam sido descritas neste veneno, como MRJP-2, alfaglicosidase, transferinas, proteases, quinases e um inibidor de protease. Após a identificação destas proteínas foi possível propor um provável mecanismo de ação deste veneno. Dentre as proteínas identificadas como alergênicas, a MRJP-8 foi identificada pela primeira vez, juntamente com fatores relacionados ao PDGF e VEGF. Os resultados dos ensaios de neutralização de atividades citotóxicas, hemolíticas e miotóxicas mostraram a eficiência do soro antiveneno produzido. Chegou-se a um volume de 5,7 mL de soro antiveneno necessários para neutralizar a ação tóxica provocada por 100 ferroadas de abelhas. Este valor está na mesma faixa de eficiência dos melhores antivenenos (ofídicos, aracnídicos e escorpionídicos) produzidos no Brasil e no mundo. O lote de soro antiveneno produzido mostrou resultados satisfatórios para ser utilizado nos testes clínicos / The aim of this work was to identify the protein profile of honeybee venom, and detect allergenic proteins and post-translational modifications. Furthermore specific antivenom was produced and potency tests were performed in order to check its power of neutralization of toxic activities of venom. They were identified 54 proteins, 9 that have never been reported before in this venom. After identification of these proteins it was possible to outline a feasible mechanism of action of venom. For the first time MRJP-8, transferrin, PDGF and VEGF factors were identified as allergenic. Results of neutralization of citotoxic, hemolytic and myotoxic activities showed the efficacy of antivenom that had satisfactory results to be tested in clinical assay