Infrared multiple photon dissociation (IRMPD) spectroscopy has been coupled with electronic structure calculations in order to elucidate the structures of several small biological molecules including: uracil, 5-fluorouracil, 5-fluorocytosine, ferulic acid, and a number of their related analogs. IRMPD is a powerful technique, that when combined with electronic structure calculations can provide convincing evidence for the structural characterization of ions in the gas phase. Isomers of uracil and 5-fluorouracil (5-FU) have been characterized by calculations performed at the MP2(full)/aug-cc-pVTZ level of theory; however, infrared multiple photon dissociation spectroscopy experiments proved to be unsuccessful for these species. Geometry optimization and frequency calculations have isolated the dominant isomer(s) for neutral and deprotonated uracil and 5-fluorouracil, along with several cluster interactions involving water, methanol, ammonia, and methylamine. For both uracil and 5-FU, a single relevant neutral isomer was determined, with each isomer existing in the diketo, as opposed to the enol form. Following the deprotonation of this neutral isomer, both uracil and 5-FU were permitted to form anionic cluster ions with water, methanol, ammonia, or methylamine, and based on the relative Gibbs free energies (298 K) of the calculated isomers, relevant cluster interactions were determined. For each cluster, several sites of intramolecular interaction were found to exist; however, interaction at the site of deprotonation was the most favourable in every instance. Ionic hydrogen bond interactions have been found in several clusters formed by 5-fluorocytosine (5-FC). The chloride and trimethylammonium cluster ions, in addition to the cationic and anionic dimers have been characterized by infrared multiple photon dissociation (IRMPD) spectroscopy and electronic structure calculations performed at the B2PLYP/aug-cc-pVTZ//B3LYP/6-311+G(d,p) level of theory. IRMPD spectra in combination with calculated spectra and relative energetics have indicated, quite conclusively, that a single isomer for each 5-FC cluster that is likely being observed experimentally except in the case of the anionic dimer, in which a combination of isomers is probable. For the 5-FC-trimethylammonium cluster specifically, the calculated spectrum of the lowest energy isomer matches the experimental spectrum remarkably well. Interestingly, the cationic dimer of 5-FC was found to have a single energetically relevant isomer (Cationic-IV) in which a unique tridentate ionic hydrogen bond interaction is formed. The three sites of intramolecular ionic hydrogen bonds in this isomer interact very efficiently, leading to a significantly large calculated enthalpy of binding of 180 kJ/mol. The magnitude of the calculated binding energy for this species, in combination with the strong correlation between the simulated and IRMPD spectra, indicates that the tridentate-bound dimer is observed predominantly in experiment. Comparison of the calculated relative Gibbs free energies (298 K) for this species with several of the other isomers considered also supports the likelihood of the dominant protonated dimer existing as Cationic-IV. Protonated ferulic acid has been characterized using infrared multiple photon dissociation spectroscopy and electronic structure calculations at the B3LYP/6-311+G(d,p) level of theory. Neutral ferulic acid has been determined to undergo protonation on the carbonyl oxygen of the acid group, forming an ion of m/z 195. Due to its extensively conjugated structure, protonated ferulic acid (m/z 195) is observed to yield three stable fragment ions in IRMPD experiments. It is proposed that two parallel fragmentation pathways of protonated ferulic acid are being observed. First, proton transfer occurs from the carbonyl oxygen to the hydroxyl oxygen within the acid group, resulting in the loss of water and subsequently carbon monoxide, forming ions of m/z 177 and 149, respectively. The second proposed fragmentation pathway undergoes proton transfer from the phenolic group to the methoxy group resulting in loss of methanol and rearrangement to a five-membered ring of m/z 163. IRMPD spectra have been obtained for the ions m/z 195 and m/z 177, and anharmonic calculations have been performed on these species at the B3LYP/6-311+G(d,p) level of theory. The calculated anharmonic spectra for these ions match the experimental spectrum exceptionally well and strongly support the proposed fragmentation mechanisms.

Abstract The studies of the deformed nucleus for the Pb isotopes in the A~190 re- gion has been carried out by using the P.S.M. The comparison between the theoretical calculation of the transition energy, kinetic moment of ine- rtia, dynamic moment of inertia, paring gap, rotational energy, quadrupole moment, and B(M1)/B(E2) and the experiment observations are presented. We found that the kinetic moment of inertia is increased as the spin incre- ase for the even-even nuclei. This rise has been interpreted as being due to the combined alignment of the quasiparticles in the high-N intruder or- bit. And the kinetic moment of inertia is constant function of spin in the odd-even nuclei. It is interpreted as been due to the Pauli blocking of odd -quasineutron in the high-N intruder orbit.

Infrared multiple photon dissociation (IRMPD) spectroscopy has been coupled with electronic structure calculations in order to elucidate the structures of several small biological molecules including: uracil, 5-fluorouracil, 5-fluorocytosine, ferulic acid, and a number of their related analogs. IRMPD is a powerful technique, that when combined with electronic structure calculations can provide convincing evidence for the structural characterization of ions in the gas phase. Isomers of uracil and 5-fluorouracil (5-FU) have been characterized by calculations performed at the MP2(full)/aug-cc-pVTZ level of theory; however, infrared multiple photon dissociation spectroscopy experiments proved to be unsuccessful for these species. Geometry optimization and frequency calculations have isolated the dominant isomer(s) for neutral and deprotonated uracil and 5-fluorouracil, along with several cluster interactions involving water, methanol, ammonia, and methylamine. For both uracil and 5-FU, a single relevant neutral isomer was determined, with each isomer existing in the diketo, as opposed to the enol form. Following the deprotonation of this neutral isomer, both uracil and 5-FU were permitted to form anionic cluster ions with water, methanol, ammonia, or methylamine, and based on the relative Gibbs free energies (298 K) of the calculated isomers, relevant cluster interactions were determined. For each cluster, several sites of intramolecular interaction were found to exist; however, interaction at the site of deprotonation was the most favourable in every instance. Ionic hydrogen bond interactions have been found in several clusters formed by 5-fluorocytosine (5-FC). The chloride and trimethylammonium cluster ions, in addition to the cationic and anionic dimers have been characterized by infrared multiple photon dissociation (IRMPD) spectroscopy and electronic structure calculations performed at the B2PLYP/aug-cc-pVTZ//B3LYP/6-311+G(d,p) level of theory. IRMPD spectra in combination with calculated spectra and relative energetics have indicated, quite conclusively, that a single isomer for each 5-FC cluster that is likely being observed experimentally except in the case of the anionic dimer, in which a combination of isomers is probable. For the 5-FC-trimethylammonium cluster specifically, the calculated spectrum of the lowest energy isomer matches the experimental spectrum remarkably well. Interestingly, the cationic dimer of 5-FC was found to have a single energetically relevant isomer (Cationic-IV) in which a unique tridentate ionic hydrogen bond interaction is formed. The three sites of intramolecular ionic hydrogen bonds in this isomer interact very efficiently, leading to a significantly large calculated enthalpy of binding of 180 kJ/mol. The magnitude of the calculated binding energy for this species, in combination with the strong correlation between the simulated and IRMPD spectra, indicates that the tridentate-bound dimer is observed predominantly in experiment. Comparison of the calculated relative Gibbs free energies (298 K) for this species with several of the other isomers considered also supports the likelihood of the dominant protonated dimer existing as Cationic-IV. Protonated ferulic acid has been characterized using infrared multiple photon dissociation spectroscopy and electronic structure calculations at the B3LYP/6-311+G(d,p) level of theory. Neutral ferulic acid has been determined to undergo protonation on the carbonyl oxygen of the acid group, forming an ion of m/z 195. Due to its extensively conjugated structure, protonated ferulic acid (m/z 195) is observed to yield three stable fragment ions in IRMPD experiments. It is proposed that two parallel fragmentation pathways of protonated ferulic acid are being observed. First, proton transfer occurs from the carbonyl oxygen to the hydroxyl oxygen within the acid group, resulting in the loss of water and subsequently carbon monoxide, forming ions of m/z 177 and 149, respectively. The second proposed fragmentation pathway undergoes proton transfer from the phenolic group to the methoxy group resulting in loss of methanol and rearrangement to a five-membered ring of m/z 163. IRMPD spectra have been obtained for the ions m/z 195 and m/z 177, and anharmonic calculations have been performed on these species at the B3LYP/6-311+G(d,p) level of theory. The calculated anharmonic spectra for these ions match the experimental spectrum exceptionally well and strongly support the proposed fragmentation mechanisms.

Research Doctorate - Doctor of Philosophy (PhD) / (**Note: this abstract is a plain text version of the author's abstract, the original of which contains characters and symbols which cannot be accurately represented in this format. The properly formatted abstract can be viewed in the Abstract and Thesis files above.**) The electronic structure and rovibrational spectroscopy of MH2, MHn+2, HMHen+ and MHen+2 (M = Li, Be, Na, Mg, K, Ca; n = 1, 2) have been investigated using correlated ab initio ansatz. In order to determine the efficacy of various electronic structure methods with respect to Group-I and II hydrides and helides, atomic properties of Li, Be,Na, Mg, K and Ca were calculated. Relativistically-corrected UCCSD(T) and ICMRCI(+Q) were deemed to be the most suitable ansatz with respect to both efficiency and accuracy. The lowest 2A1 and 2Σ- states of MH2 were found to be purely repulsive, in agreement with previous predictions. The main factor determining the structure and stability of the excited states of MH2 was the relative orientations and occupations of the valence p atomic orbital of M and the H2 1Ou orbital. The ground states of MHn+2 were found to be the result of the charge-quadrupole interaction between Mn+ and the H2 molecular subunit. The structures of the ground states of HMHe+ were extremely uxional with respect to the central bond angle co-ordinate. The ground state PESs of MHe+2 were also extremely sensitive to the ab initio ansatz by which they are modelled. The respective bonding of the H and He in both HMHe+ and HMHe2+ appeared to be charge-dependent in the case of Be, Mg and Ca. Despite the weak bonding observed for the Group-II hydrohelide and helide monocations, the corresponding dications each exhibit thermodynamically stable equilibria. The solution algorithm of von Nagy-Felsobuki and co-workers was employed in the calculation of vibrational and rovibrational spectra. This algorithm employed an Eckart-Watson Hamiltonian in conjunction with rectilinear normal co-ordinates. Vibrational and rovibrational Hamiltonian matrices were diagonalised using variational methods. This algorithm was extended so that the vibration transition moment integrals, and hence vibrational radiative properties, of linear triatomic molecules could be calculated. A method by which vibration-averaged structures are calculated was also developed and implemented. Analytical potential energy functions (PEFs) and dipole moment functions (DMFs) of (1A1)LiH+2, (1A1)NaH+2, (1A1)BeH2+2,(1A1)MgH2+2, (1Σ+g )BeHe2+2, (2Σ+)HBeHe2+, (1Σ+g )MgHe2+2 and (2Σ+)HMgHe2+ were developed using leastsquare regression techniques in conjunction with discrete ab initio grids. Vibrational structures and spectra of these species were subsequently calculated. In addition, the rovibrational spectra of (1A1)LiH+2, (1A1)NaH+2, (1A1)BeH2+2 and (1A1)MgH2+2 were calculated. For (1A1)LiH+2 and (1A1)LiD+2 , calculated rovibrational transition frequencies for J ≤ 10 and 0 ≤ K ≤ 3 were within ca. 0.1-0.2% of experimental values.

Research Doctorate - Doctor of Philosophy (PhD) / (**Note: this abstract is a plain text version of the author's abstract, the original of which contains characters and symbols which cannot be accurately represented in this format. The properly formatted abstract can be viewed in the Abstract and Thesis files above.**) The electronic structure and rovibrational spectroscopy of MH2, MHn+2, HMHen+ and MHen+2 (M = Li, Be, Na, Mg, K, Ca; n = 1, 2) have been investigated using correlated ab initio ansatz. In order to determine the efficacy of various electronic structure methods with respect to Group-I and II hydrides and helides, atomic properties of Li, Be,Na, Mg, K and Ca were calculated. Relativistically-corrected UCCSD(T) and ICMRCI(+Q) were deemed to be the most suitable ansatz with respect to both efficiency and accuracy. The lowest 2A1 and 2Σ- states of MH2 were found to be purely repulsive, in agreement with previous predictions. The main factor determining the structure and stability of the excited states of MH2 was the relative orientations and occupations of the valence p atomic orbital of M and the H2 1Ou orbital. The ground states of MHn+2 were found to be the result of the charge-quadrupole interaction between Mn+ and the H2 molecular subunit. The structures of the ground states of HMHe+ were extremely uxional with respect to the central bond angle co-ordinate. The ground state PESs of MHe+2 were also extremely sensitive to the ab initio ansatz by which they are modelled. The respective bonding of the H and He in both HMHe+ and HMHe2+ appeared to be charge-dependent in the case of Be, Mg and Ca. Despite the weak bonding observed for the Group-II hydrohelide and helide monocations, the corresponding dications each exhibit thermodynamically stable equilibria. The solution algorithm of von Nagy-Felsobuki and co-workers was employed in the calculation of vibrational and rovibrational spectra. This algorithm employed an Eckart-Watson Hamiltonian in conjunction with rectilinear normal co-ordinates. Vibrational and rovibrational Hamiltonian matrices were diagonalised using variational methods. This algorithm was extended so that the vibration transition moment integrals, and hence vibrational radiative properties, of linear triatomic molecules could be calculated. A method by which vibration-averaged structures are calculated was also developed and implemented. Analytical potential energy functions (PEFs) and dipole moment functions (DMFs) of (1A1)LiH+2, (1A1)NaH+2, (1A1)BeH2+2,(1A1)MgH2+2, (1Σ+g )BeHe2+2, (2Σ+)HBeHe2+, (1Σ+g )MgHe2+2 and (2Σ+)HMgHe2+ were developed using leastsquare regression techniques in conjunction with discrete ab initio grids. Vibrational structures and spectra of these species were subsequently calculated. In addition, the rovibrational spectra of (1A1)LiH+2, (1A1)NaH+2, (1A1)BeH2+2 and (1A1)MgH2+2 were calculated. For (1A1)LiH+2 and (1A1)LiD+2 , calculated rovibrational transition frequencies for J ≤ 10 and 0 ≤ K ≤ 3 were within ca. 0.1-0.2% of experimental values.

Title: Laboratory study of field ion emission from dust grains Author: Martin Jeřáb Department: Department of Surface and Plasma Science Supervisor: Prof. RNDr. Jana Šafránková, DrSc., KFPP Abstract: Dust particles are common objects in space environment. As a dust particles, we call objects with typical sizes of several atoms up to approximately 100 µm. However, a total mass of dust particles is only about 1% of total mass of our galaxy, the presence of dust particles significantly affects environment. The most interesting is dynamics of dust particles and attached dust charging processes. The presented thesis consists of two main parts. The first part deals with the experimental study of field ion emission. Our measurements have been performed using gold and carbon spherical dust grains. It has been found that during the charging of dust particle using ion gun are the primary ions implanted under the surface of the dust particle from where they are release in the form of neutral gas. This releasing of implanted ions affects field ion emission for several hours. The second part of the thesis describes a development of new experimental apparatus determined to the study of photoemission dust charging and con- sequently to the "true" field ion emission study. Keywords: dust, dusty plasmas, charging properties, field...

A ênfase deste trabalho foi a aplicação da técnica de RMN em campo zero para a obtenção do acoplamento quadrupolar e dos espectros de RMN em banda larga dos núcleos de 27Al (amostra GdAl2), 139La e 55Mn (amostras de Manganita), à temperatura de 4,2 K. O objetivo do trabalho foi obter resultados confiáveis tanto em relação aos espectros quanto aos valores dos acoplamentos quadrupolares das amostras de GdAl2 e de Manganitas, e utilizar estes resultados para auxiliar a entender e a determinar algumas das propriedades físicas destes materiais (no caso do GdAl2 o comportamento tipo Spin-Glass e o efeito Magnetocalórico, no caso das Manganitas a Magnetoresistência Colossal). Para se determinar o valor do acoplamento quadrupolar utilizou-se a técnica de medida das oscilações quadrupolares. Os espectros de RMN, em banda larga, foram obtidos utilizando-se a técnica de eco de Hahn variando-se a frequência de excitação em uma faixa de 5 a 500 MHz. A maior sensibilidade do equipamento montado em nosso laboratório permitiu que se observassem os múltiplos ecos devidos à interação quadrupolar. Consequentemente, estes ecos permitiram a obtenção de espectros de RMNz de 27Al com alta resolução e a medida do valor do acoplamento quadrupolar diretamente do espectro. Também foi mostrado que os múltiplos ecos do 27Al são originados em regiões diferentes da amostra. Os resultados dos experimentos de oscilação quadrupolar em amostras de Manganitas permitiram que se observassem vários valores de acoplamento quadrupolar, que podem ser devido à desordem da estrutura cristalina dos octaedros de MnO6 ou à variação angular do ângulo entre o campo magnético hiperfino e a o eixo de fácil magnetização. Também foi mostrado que os valores de acoplamento quadrupolar mudam em função do elemento dopante utilizado. A aplicação do campo externo diminui a distribuição de acoplamento quadrupolar, mostrando que a aplicação do campo magnético externo causa mudanças ou na rede cristalina e/ou na orientação do campo magnético hiperfino e, consequentemente, sobre as propriedades físicas das Manganitas. A comparação entre os espectros de 139La e 55Mn das diferentes amostras de Manganita mostrou a coexistência de fases magnéticas. Estes resultados mostram que a técnica de RMNz é uma excelente ferramenta para se determinar o estado magnético fundamental dos materiais magnéticos e as mudanças na estrutura cristalina através da observação do acoplamento quadrupolar. / The emphasis of this work was the application of zero-field NMR technique to obtain the quadrupole coupling and NMR broadband spectra of the nuclei 27Al (GdAl2 sample), 139La and 55Mn (Manganites samples), at 4.2 K. The objective was to obtain reliable results for both spectra and quadrupole coupling values of samples GdAl2 and Manganites, and use these results to help understand and determine some of the physical properties of these materials (for GdAl2 the Spin-Glass type behavior and the Magnetocaloric effect and for Manganites the Colossal Magnetoresistance effect). To determine the value of the quadrupole coupling it was used the quadrupole oscillations technique. The NMR broadband spectra were obtained using the Hahn echo technique, in the frequency excitation range 5 to 500 MHz. The greater sensitivity of the equipment allowed observing multiples echoes due to quadrupole interaction, these echoes allowed to obtain spectra of zero field RMN of 27Al with high resolution and measure the value of the quadrupole coupling directly from the spectrum. It was also shown that the 27Al multiple echoes are generated in different regions of the sample. The quadrupole oscillation experiments results on Manganite samples have obtaned several values of quadrupole coupling, indicating that the Manganites Ferromagnetic Metallic Phase present high degree of disorder or, in the crystalline structures or in the hyperfine magnetic field direction. It was shown that the change in the value of the quadrupole coupling depends on the dopant used in the Manganites composition. The results of the quadrupole oscillations with application of an external magnetic field showed that the degree of disorder decreases due to the external magnetic field, showing the influence of the external magnetic field on the crystal network and/or in the hyperfine magnetic field direction, and consequently of some Manganites physical properties. The comparison between the spectra of 139La and 55Mn of the different Manganite samples shows the coexistence of different magnetic phases. These results showing that the technique of zero-field NMR is excellent to determine the fundamental magnetic state of the magnetic materials and observe changes in the crystal structure by the observation of the quadrupole coupling.

A química computacional apresenta a grande vantagem de prover informações fundamentais para espécies moleculares propostas, antes mesmo de sua síntese em laboratório. A Teoria do Funcional da Densidade é bastante utilizada nesta área, produzindo resultados satisfatórios para um grande número de propriedades e sistemas, mas com uma menor demanda por recursos computacionais que métodos mais avançados. Entretanto, o desenvolvimento de funcionais que incluem efeitos relativísticos ainda se encontra num estágio inicial. Em geral, tais efeitos são importantes em compostos de átomos pesados, embora devam ser considerados também em sistemas com átomos mais leves se a propriedade em estudo for particularmente sensível, como é o caso do gradiente de campo elétrico na posição de núcleos em moléculas. Assim, na primeira etapa desta dissertação foi avaliado o desempenho de funcionais comuns de troca-correlação não relativísticos, quando utilizados em conjunto com o formalismo de quatro componentes (tratamento relativístico), no estudo dos gradientes de campo elétrico em núcleos de átomos (índio, antimônio, iodo, lutécio e háfnio) constituindo moléculas diatômicas. Foram investigados funcionais baseados nas aproximações da densidade local e do gradiente generalizado, funcionais híbridos e que incluem correções em termos da atenuação com a distância. Nossos resultados, que estão em acordo com observações da literatura, ressaltam o melhor desempenho de funcionais híbridos e com correções de atenuação para esta propriedade e demonstram a importância do uso do método indireto. Posteriormente, foi feita uma nova parametrização de alguns dos melhores funcionais não relativísticos selecionados na etapa anterior (B3LYP, PBE0 e CAM-B3LYP), dentro do formalismo de quatro componentes, para uso no cálculo destes mesmos gradientes num grupo teste de átomos (cobre, iodo, lantânio e ouro) em moléculas lineares. Nestes casos, os funcionais modificados propostos tiveram um bom desempenho geral e foram particularmente bem sucedidos para cobre e ouro. Finalmente, é possível destacar o funcional híbrido PBE0 e sua modificação, proposta neste estudo, por conta de seu desempenho excelente, tanto para os metais como para os demais elementos que tiveram seus EFGs investigados aqui. / The computational chemistry has the great advantage of providing fundamental information for proposed molecular species even before their synthesis in laboratory. The Density Functional Theory is widely used in this area, producing satisfactory results for a large number of properties and systems, but with a lower demand for computational resources than that of more advanced methods. However, the development of functionals that include relativistic effects is still at an early stage. In general, these effects are important in compounds containing heavy elements, but they must also be considered in systems of lighter atoms if the studied property was particularly sensitive, as occurs for the electric field gradient at the position of nuclei in molecules. Thus, the first step of this dissertation was to evaluate the performance of common non-relativistic exchange-correlation functionals when used in conjunction with the four component formalism (relativistic treatment) in the study of electric field gradients at the nuclei of atoms (indium, antimony, iodine, lutetium and hafnium) forming diatomic molecules. Functionals based on the local density approximation and generalized gradient approximation, hybrid functionals and the ones that include attenuation corrections were investigated. Our results, which are in agreement with observations in the literature, highlight the best performance of hybrid functionals and attenuation corrections for this property and demonstrate the importance of using the indirect approach. Subsequently, there was a new parameterization of some of the best non-relativistic functionals selected in the previous step (B3LYP, PBE0 and CAM - B3LYP) within the four component formalism for calculations of these same gradients in a trial group of atoms (copper, iodine, lanthanum and gold) into linear molecules. In these cases, the modified functionals proposed had a satisfactory overall performance and were particularly successful for copper and gold. Finally, it is possible to mention the excellent performance of the hybrid functional PBE0 and its modification proposed in this study for both metals and the other elements that had their EFGs investigated here.

Abstract In this thesis, the theory of static magnetic resonance spectral parameters of nuclear magnetic resonance (NMR) and electron spin resonance (ESR) spectroscopy is investigated in terms of the molecular Breit-Pauli Hamiltonian, which is obtained from the relativistic Dirac equation via the Foldy-Wouthuysen transformation. A leading-order perturbational relativistic theory of NMR nuclear shielding and spin-spin coupling tensors, and ESR electronic g-tensor, is presented. In addition, the possibility of external magnetic-field dependency of NMR parameters is discussed. Various first-principles methods of electronic structure theory and the role of one-electron basis sets and their performance in magnetic resonance properties in terms of their completeness profiles are discussed. The presented leading-order perturbational relativistic theories of NMR nuclear shielding tensors and ESR electronic g-tensors, as well as the theory of the magnetic-field dependent NMR shielding and quadrupole coupling are evaluated using first-principles wave function and density-functional theories.

The aim of this study was to investigate the utility of direct analysis in real time quadrupole time-of-flight mass spectrometry and gas chromatography quadrupole time-of-flight mass spectrometry in the analysis of 162 different synthetic cannabinoids. Direct analysis in real time quadrupole time-of-flight mass spectrometry is shown to be a rapid and accurate analytical method for synthetic cannabinoids. Spectra can be generated with less than 1.5 ng of the drug in under a minute and be successfully searched against previously generated ESI-QTOF libraries in most cases (118/130 drugs tested) as well as can also be applied to the identification of synthetic cannabinoids in a mixture. Gas chromatography quadrupole time-of-flight mass spectrometry, while requiring a much longer analysis time, is shown to accurately distinguish all but 19 compounds (140/159). These two instruments have proven to be viable alternatives in synthetic cannabinoid analysis and will greatly benefit forensic laboratories.