Esse trabalho oferece uma avaliação da abundância do papagaio-de-peito-roxo (Amazona vinacea) para 2016 e 2017, combinando contagens em dormitórios ao longo de toda a distribuição da espécie, em escala global, com amostragens replicadas em dormitórios na região oeste de Santa Catarina (WSC), em escala local, Brasil. As contagens em escala global resultaram em 3888 e 4066 indivíduos em 2016 e 2017, respectivamente. As estimativas para o WSC foram de 945 ± 50 e 1393 ± 40 para os mesmos dois anos. Não foi observada nenhuma evidência de crescimento populacional de 2016 para 2017, pois o acréscimo no número de indivíduos foi acompanhado por aumento do esforço amostral em ambas escalas. Quando extrapolamos a abundância no WSC para toda a área de distribuição da espécie, segundo a IUCN, e pressupondo densidade homogênea, obtivemos valores que estão acima da contagem na escala global, mas dentro da mesma ordem de magnitude. Nosso resultado oferece uma base sólida para afirmar que o tamanho populacional global de A. vinacea é de milhares de indivíduos, mas não dezenas de milhares. Realizamos um esforço sistemático para considerar as principais fontes de incerteza na estimativa de abundância da espécie. Cada contagem, tanto na escala local quanto na global, incluíram visitas em todos os dormitórios conhecidos dentro de um intervalo de 10 dias, evitando duplas contagens devido ao movimento dos papagaios entre dormitórios. No WSC, a abundância foi estimada usando um N-Mixture Model implementado em contexto Bayesiano. Apesar de nossa estimativa de tamanho populacional e de área de distribuição serem maiores do que as consideradas pela IUCN, sugerimos que A. vinacea permaneça na categoria “Em Perigo”, até que sejam realizados estudos sobre tendência populacional. / We offer an assessment of Vinaceous parrot (Amazona vinacea) abundance in 2016 and 2017, combining roost counts over the whole range of the species, with a replicated survey of roosts at the local scale, in western Santa Catarina state (WSC), Brazil. The whole range counts amounted to 3888 and 4066 individuals in 2016 and 2017, respectively. The WSC estimates were 945 ± 50 and of 1393 ± 40 individuals, for the same two years. We found no evidence of population growth from 2016 to 2017 because the increase in numbers is accompanied by an increase in observation effort both in WSC and at the whole-range scale. When extrapolating the WSC abundance estimate to the whole IUCN extant range of the species under the simplifying assumption of homogenous population density, we obtain values above the whole-range counts, but within the same order of magnitude. Such result offers a sound basis for putting the global population size of A. vinacea in the thousands of individuals, but not in the tens of thousands of individuals. We made a systematic effort to address key sources of uncertainty in parrot abundance estimation. Each count, at the local or whole-range scale, includes visits to all relevant roosts within less than ten days time to avoid double counting due to movement between roosts. At the local scale, we estimated abundance using an N-Mixture Model of replicated count data, implemented in a Bayesian framework. Even though we estimate a larger population size and a bigger geographic range that those currently reported by the IUCN, we suggest that A. vinacea should remain in the ‘Endangered’ IUCN threat category, pending further investigation of population trends.

Esse trabalho oferece uma avaliação da abundância do papagaio-de-peito-roxo (Amazona vinacea) para 2016 e 2017, combinando contagens em dormitórios ao longo de toda a distribuição da espécie, em escala global, com amostragens replicadas em dormitórios na região oeste de Santa Catarina (WSC), em escala local, Brasil. As contagens em escala global resultaram em 3888 e 4066 indivíduos em 2016 e 2017, respectivamente. As estimativas para o WSC foram de 945 ± 50 e 1393 ± 40 para os mesmos dois anos. Não foi observada nenhuma evidência de crescimento populacional de 2016 para 2017, pois o acréscimo no número de indivíduos foi acompanhado por aumento do esforço amostral em ambas escalas. Quando extrapolamos a abundância no WSC para toda a área de distribuição da espécie, segundo a IUCN, e pressupondo densidade homogênea, obtivemos valores que estão acima da contagem na escala global, mas dentro da mesma ordem de magnitude. Nosso resultado oferece uma base sólida para afirmar que o tamanho populacional global de A. vinacea é de milhares de indivíduos, mas não dezenas de milhares. Realizamos um esforço sistemático para considerar as principais fontes de incerteza na estimativa de abundância da espécie. Cada contagem, tanto na escala local quanto na global, incluíram visitas em todos os dormitórios conhecidos dentro de um intervalo de 10 dias, evitando duplas contagens devido ao movimento dos papagaios entre dormitórios. No WSC, a abundância foi estimada usando um N-Mixture Model implementado em contexto Bayesiano. Apesar de nossa estimativa de tamanho populacional e de área de distribuição serem maiores do que as consideradas pela IUCN, sugerimos que A. vinacea permaneça na categoria “Em Perigo”, até que sejam realizados estudos sobre tendência populacional. / We offer an assessment of Vinaceous parrot (Amazona vinacea) abundance in 2016 and 2017, combining roost counts over the whole range of the species, with a replicated survey of roosts at the local scale, in western Santa Catarina state (WSC), Brazil. The whole range counts amounted to 3888 and 4066 individuals in 2016 and 2017, respectively. The WSC estimates were 945 ± 50 and of 1393 ± 40 individuals, for the same two years. We found no evidence of population growth from 2016 to 2017 because the increase in numbers is accompanied by an increase in observation effort both in WSC and at the whole-range scale. When extrapolating the WSC abundance estimate to the whole IUCN extant range of the species under the simplifying assumption of homogenous population density, we obtain values above the whole-range counts, but within the same order of magnitude. Such result offers a sound basis for putting the global population size of A. vinacea in the thousands of individuals, but not in the tens of thousands of individuals. We made a systematic effort to address key sources of uncertainty in parrot abundance estimation. Each count, at the local or whole-range scale, includes visits to all relevant roosts within less than ten days time to avoid double counting due to movement between roosts. At the local scale, we estimated abundance using an N-Mixture Model of replicated count data, implemented in a Bayesian framework. Even though we estimate a larger population size and a bigger geographic range that those currently reported by the IUCN, we suggest that A. vinacea should remain in the ‘Endangered’ IUCN threat category, pending further investigation of population trends.

Northern long-eared bat (Myotis septentrionalis) populations have declined sharply in recent years due to the introduction and rapid spread of White-nose Syndrome. This has prompted an urgent need for a greater understanding of their natural history in order to support the conservation of extant populations, particularly where forested day-roost and foraging habitats are being fragmented by development. Prior to 2006, with other Myotis species on the endangered species list, northern long-eared bats were understudied. In recent years, with the pressing concern to document the ecology of all cave bats affected by White-nose Syndrome on the landscape, researchers have now prioritized northern long-eared bat habitat needs, day-roost use, social dynamics, and barriers to gene flow. A relatively new discovery has been the numerous coastal populations that occur in smaller forest patches often surrounded by anthropogenic development. The goal of my research is to aid in informing future monitoring and management protocols that are specific to northern long-eared bats, particularly as they may shift from Threatened to Endangered under the Endangered Species Act. The chapters of this dissertation explore (1) similarities and differences between coastal and more documented upland habitat associations for populations of northern long-eared bats throughout the summer months through the use of acoustic detectors; (2) relationships between acoustic activity patterns and weather on an hourly basis for several bat species on Long Island, New York; and (3–4) day-roost characteristics and social network dynamics of a coastal northern long-eared bat maternity colony on Long Island, New York. I found that northern long-eared bat colonies have larger spatial footprints in – and a moderate tolerance for – forests in anthropogenically-developed areas than previously believed, though many natural history aspects of the bat were similar among coastal and interior populations. Installation of artificial day-roost structures such as bat boxes would likely be used and highly beneficial to colonies in these conditions, particularly to offset the deleterious effects of stochastic disturbance events on day-roost availability and to support social cohesion (and, by extension, reproductive success) for coastal maternity colonies. Additionally, I found that acoustic activity increased in riparian areas, or at sites closer to water features, and as proportion of forest coverage increased at a broad scale. However, immediately around the detector this relationship was reversed. Taken together, this demonstrates that riparian corridors, water features, and forest structural heterogeneity should explicitly be included in management guidelines. / Doctor of Philosophy / White-nose Syndrome is a fungal disease that has killed millions of cave bats in North America, including the northern long-eared bat (Myotis septentrionalis) that during the spring through fall uses forests for roosting and foraging habitat. As the disease continues to spread, and as forests are increasingly being lost to urbanization, it is imperative for researchers and land managers to understand the landscape needs of this species so that they can retain those forests that are used by this species. In addition to broader landscape needs, it is important to understand what specific forest stand to tree features the bats are using, how their social dynamics support their reproductive success, and how to best support habitat conditions foster mating in the fall swarm to avoid inbreeding. In recent years, more northern long-eared bats have been documented in coastal landscapes, suggesting that these areas might be more important to the conservation of the species than previously believed. In this dissertation, my aim was to explore how or why the landscapes in these coastal areas were being used by these bats both during nightly foraging and during the day as resting areas (day-roosts). Additionally, I explored how multiple species of bats were responding to weather conditions on the coast across seasons. Overall, I found that complex forests continue to be an important resource for northern long-eared bats, as well as water features whereby the latter should be more explicitly included in conservation management plans. Northern long-eared bats also show an ability to successfully use small forest patches within a larger urbanized landscape, including using human structures for day-roosts. Human structures might provide reliable, multi-year day-roosts in areas where extreme coastal weather events (hurricanes) occur or increase or as natural processes reduce the suitability of these forests to provide day-roosts. These structures, particularly artificial roost boxes could also support the social network of reproductive northern long-eared bats and thus maintain population stability to some extent.

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Like many species, Florida's population of Northern Crested Caracaras (Caracara cheriway, hereafter "caracara") is likely declining due to loss of breeding habitat. Consequently, management-oriented restrictions on landscape modification are applied where breeding occurs, but management rarely is extended beyond breeding areas. Focusing management on breeding areas can be effective if all caracaras occupy breeding areas, all breeding areas are detected, and no intermittent breeding occurs. Management may not operate as intended if any of these criteria are unmet. To explore this possibility, I investigated the movement, habitat, survival, and social biology of non-breeding caracaras. I also investigated long-term occupancy of breeding habitat, and factors contributing to detection of breeding. Non-breeding caracaras occupy areas much larger than individual breeding territories, particularly during breeding seasons. Pastures occupied by cattle were the most used habitat, but non-breeding caracaras also occupied habitats atypical of breeding areas. Specifically, citrus groves were occupied extensively, and row crops were used particularly during breeding seasons. Non-breeding caracaras also shared communal roosts, sometimes with hundreds of conspecifics, and roosts were occupied year-round. Survival of non-breeding caracaras was lowest during breeding seasons. Adult non-breeding caracaras persisted in groups for multiple years without establishing breeding territories. This implies that breeding habitat is limited and saturated. Given the proportion of adults in groups, adults also were the first to find carrion more often than expected. Apparently, young caracaras benefit from grouping by following adults. I found caracaras at all sampled breeding areas where nests were originally documented during the 1990s, and found nests at 83% of territories where nests likely existed. I also found that observer experience, visit start time, and weather affected the probability that a nest would be detected. Thus, not all caracaras occupy breeding areas, and not all breeding attempts are likely to be detected. Long-term occupancy of breeding areas should render annual verification of nesting unnecessary as a trigger for maintaining management actions. Rather management should persist even without confirmation of annual breeding. Caracara management also may be optimized through supporting the non-breeding population by maintaining a matrix of cattle pasture and citrus groves, particularly around roosts. / Ph. D.

Production de bois et autres ressources (gibier, champignons,...), conservation de la biodiversité et gestion des paysages, la forêt a suscité de riches débats depuis quelques années, le Grenelle de l'Environnement ayant révélé des intérêts parfois contradictoires. Si le gestionnaire forestier tente de développer autant que possible une gestion multifonctionnelle de ses forêts, il reste dépendant des connaissances fragmentaires sur les interactions dans les écosystèmes forestiers. La politique actuelle, qui vise à concilier la production de bois et la préservation des espèces, repose plus sur des expériences de terrain que sur des études étayées scientifiquement. Les Chiroptères comptent des espèces candidates pour étudier l'influence de la gestion forestière sur la biodiversité : le jour, elles occupent des gîtes arboricoles et, la nuit, elles exploitent des habitats forestiers pour chasser leurs proies, qui dépendent elles-mêmes de micro-habitats forestiers. Pour aider le gestionnaire à mettre en œuvre une stratégie de gestion conservatoire, nous avons étudié l'utilisation des ressources de la forêt par trois espèces : Myotis bechsteinii, Myotis nattereri et Plecotus auritus. La radio-localisation a permis d'identifier des réseaux d'arbres-gîte dont l'occupation varie selon les espèces, leur statut reproducteur et l'implication dans le comportement de fission-fusion des colonies de parturition. Les différentes utilisations des gîtes impliquent une stratégie de gestion propre à chaque espèce, voire à chaque colonie de reproduction. Procurant a priori de potentiels gîtes et proies, le bois mort debout favorise la richesse spécifique des Chiroptères forestiers à partir de 25 m3 à l'hectare, mais une stratification de la végétation pourrait être un objectif de gestion, la réponse des espèces était essentiellement liée à la structure forestière des trouées induites par le bois mort. Ce travail a ensuite nécessité de s'intéresser aux méthodes permettant de comprendre l'utilisation de l'espace par chaque individu (domaine vital) et la façon dont chacun d'eux fréquente ses terrains de chasse (sélection de l'habitat). Compte tenu des limites technologiques, le Kernel semble actuellement la meilleure méthode de représentation et de calcul de surface du domaine vital alors que la K-select a livré des résultats significatifs pour mettre en évidence des facteurs de sélection d'habitat. Les surfaces des domaines vitaux et des centres d'activité varient selon les espèces, Myotis bechsteinii associe de petites surfaces à un comportement territorial, surtout en période d'allaitement. M. nattereri et Plecotus auritus peuvent exploiter de grands espaces sur lesquels ils se limitent à de petits centres d'activité. Les colonies de ces dernières pourront plus facilement se déplacer dans leur domaine vital au gré des itinéraires de gestion mis en œuvre. Les caractéristiques des habitats forestiers utilisés comme terrains de chasse varient selon les espèces, voire le sexe, l'âge et le statut reproducteur des individus, mais toutes trois montrent une forte sélectivité pour les peuplements forestiers présentant un fort encombrement végétal, des gros arbres et une forte structuration du peuplement. Cinq principes de gestion dans un contexte fort de production de bois sont développés en conclusion des résultats avec deux exemples de stratégies de gestion destinée au maintien des Chiroptères. / The forest is the center of many interests that fuel the debates of our society. These debates are particularly exacerbated since the french " Grenelle de l'Environnement " in 2008. Among the various expectations, forest produce wood that is the subject of attentions, both by an increased demand for certain types of trees and by the naturalist world which sees in it one of last refuges for biodiversity in our modified landscapes. Thus, if the forest manager is trying to develop a management that is as much multifunctional as possible, it remains dependent on fragmented knowledge on the link between biodiversity and the forest ecosystem. Despite the establishment of a conservation policy that seeks to balance timber production and species preservation, the way to conduct such a policy is based on concrete field experiences yet scientifically unsubstantiated. Bats are good candidate species to study the response of biodiversity to forest management: they select networks of tree-roosts in which they form breeding colonies composed of several dozen individuals and they exploit forest habitats to hunt their prey, prey which themselves depend on forest microhabitats. However, their study is recent in forest and provides very vague management guidelines. To help managers implement a conservation management strategy, we thus studied the behavior of forest usage by three species of gleaning bats, Myotis bechsteinii, Myotis nattereri and Plecotus auritus. This work required to focus on the methods available to understand the use of space by each individual (home range) and how each individual selects its hunting habitats. We showed that each species had a unique response to available habitats and that the status of individuals (sex, age and reproductive status) intervenes in explaining the selection of tree roosts and hunting grounds. Both compartments are constrained by the availability of suitable habitat, helping to explain the structuring of habitat selection factors and the shape and surface of individual home ranges. Furthermore, the way networks of tree-roost are used partly explains the types of roosts selected. These different results means that it is necessary to lay down specific management strategies for each species, even each breeding colony. Finally, we studied the role of deadwood to explain the presence of bats in forests. We have shown that species richness increased from standing deadwood of 25m3 per hectare, while the response of species to deadwood was mainly restricted to forest habitat structure produced by the gaps resulting from the deadwood patch, favoring particularly edge-foraging species. Some species do however clearly benefit from insects emerging from deadwood. Five recommendations are proposed for the conservation of these species in a context of strong wood production.