The electronic structure and photofragmentation dynamics of several molecular and cluster anions have been investigated in the gas phase via negative ion velocity-map imaging photoelectron spectrometer combined with tandem time-of-flight (TOF) mass spectrometry. Among others, photoelectron imaging investigation of the halogen- and cyano- substituted methyl radicals and corresponding carbenes has been performed on several mono- and hetero- substituted species – dicyanomethyl and chlorocyanomethyl radicals, ·CH(CN)₂ and ·CHClCN, and corresponding carbenes, NCCCN and CClCN. The results are discussed in comparison with the corresponding dichloro- species, focusing on the divergent effects of the halogen and pseudohalogen (CN) substitutions. A cooperative (captodative) interaction of π-donor Cl and π-acceptor cyano groups favors the increased stability of the CHClCN radical, but a competition of the two substituents is observed in the singlet-triplet splitting of the carbene. The experimental results are consistent with high level ab-initio calculations using the spin-flip approach in combination with the coupled-cluster theory. The C-H bond dissociation energies were determined for several substituted methanes and discussed. Additionally, a practical model is presented for describing the energy dependence of laboratory-frame photoelectron angular distributions in direct photodetachment from (in principle) any molecular orbital using linearly polarized light. A transparent mathematical approach is used to generalize the Cooper-Zare central-potential model to initial states of any mixed character. In the limits of atomic photodetachment or photoionization, the model reproduces the Cooper-Zare formula. In the case of electron emission from an orbital described as a superposition of s- and p-type functions, the model yields the previously obtained s-p mixing formula. The formalism is further advanced using the Hanstorp approximation, valid for anion photodetachment only, whereas the relative scaling of the partial wave cross-sections is assumed to follow the Wigner threshold law. The resulting model can be used to describe the energy dependence of photoelectron anisotropy for any atomic, molecular, or cluster anions. As a benchmark case, we compare the predictions of the p-d variant of the model to the experimental results for NO⁻ photodetachment and show that the observed anisotropy trend is described well using physically meaningful values of the model parameters.

Redox cofactors and amino-acid free radicals play important roles in biology. Although many of the same cofactors and amino acids that form these radicals are found across a broad range of biological systems, identical cofactors can have different reduction potentials. The local environment plays a role in defining these redox potentials. An understanding of this local-environment effect can shed more light on how redox chemistry works in nature. Our laboratory has developed a library of model proteins that are well suited to study amino-acid radicals. a3X is a de novo designed protein that is composed of 67 residues. It forms a three-helix bundle connected by two glycine loops. The radical site is located at position 32 on the central a-helix. The a3X protein is designed to be well-folded and thermodynamically stable across a broad pH range. Paper 1 describes the structural and electrochemical characterization of a3Y, a tyrosine variant of a3X. We were able to obtain a unique Faradaic response from Y32 at both low and high pH, using differential pulse voltammetry. In addition, we successfully redesigned α3Y by introducing a histidine in close proximity to Y32, creating a tyrosine/histidine pair. Our goal in creating this pair was to study proton-coupled electron transfer (PCET) in a well-structured and solvent-sequestered protein environment.  In paper 2 we illustrated the redox reversibility of Y32 and produced the first ever Pourbaix diagram for a tyrosine radical in a protein. The formal potential of the Y32-OŸ/Y32-OH redox couple was determined to be 918 ± 2 mV vs. the normal hydrogen electrode (NHE) at pH 8.40.  While at pH 5.52, the formal potential of the Y32-OŸ/Y32-OH redox couple was recorded at 1.07 V. Papers 3 and 4 utilize a3W to study cation-π interactions. In paper 3, we showed how solvation can affect the strength of these interactions by -0.9 kcal/mol. In Paper 4, we were able to monitor the disruption of the cation-π interaction with the use of high-pressure fluorescence and were able to calculate the interaction energy for a solvent exposed cation-π. The aim of the work described in this thesis was to use model proteins to study tyrosine radicals to gain a broader perspective and better understanding of the versatility of biological electron transfer and to measure cation-π interactions and how they behave in different environments. / <p>At the time of the doctoral defense, the following paper was unpublished and had a status as follows: Paper 4: Manuscript.</p>

Free radicals are thought to be involved in the destructive process of beta cells in Type 1 diabetes mellitus. Studies were performed to test the hypotheses (1) that malondialdehyde (MDA), a by-product of lipid peroxidation, affects $ beta$-cell function and integrity in vitro and (2) that such effects might be prevented in the BB rat (a model of spontaneous autoimmune diabetes) in vivo by administration of $ alpha$-phenyl-N-tert-butylnitrone (PBN), a free radical spin trap. First, islets of Wistar-Furth rats were studied at 12, 24 and 40 hr of culture in either 5.5, 11 or 16.5 mM glucose, and MDA at a range of concentrations ($6 times10 sp{-12}$-10$ sp{-3}$M). High concentrations of MDA inhibited glucose-stimulated insulin release without corresponding decreases in islet insulin content, suggesting that in situations with high predicted islet free radical content (e.g., autoimmune insulitis) beta cell function may be affected even before the cells are destroyed. Second, 28 diabetes-prone (BBdp) and 13 non diabetes-prone (BBn) rats were given PBN (20 mg/kg) s.c. 2x/day and 27 BBdp and 12 BBn rats received an equal volume of saline. PBN was able to decrease MDA in the absence of the autoimmune process and is remarkably non-toxic. However, it did not prevent diabetes for reasons which may include its concentration at the site of the inflammatory process or specificity to types of radicals trapped. Because it did decrease MDA, either a higher dose or a combination of PBN with other agents may hold promise for disease prevention.

Oxidative stress, resulting from an antioxidant/free radical imbalance, is considered to be an important etiologic factor in the patho-physiological changes associated with salt sensitive hypertension. An important unresolved issue in hypertension research is the mechanism for organ damage during the development of the syndrome. Reactive oxygen species (ROS) such as the superoxide radical (02) , hydrogen peroxide (H202), and the hydroxyl radical (OH), may playa critical role in the pathogenesis of hypertension by targeting the very tissue that is responsible for regulating blood pressure, during the hypertensive state. Thus, this study was undertaken to evaluate the antioxidant and free radical status in the DSS rat strain, which has been shown to be an excellent model of salt sensitive hypertension. The antioxidant status was evaluated on the basis of the vascular superoxide dismutase (SOD) and glutathione peroxidase (GPx) levels, and the free radical status was evaluated on the basis of the plasma H20 2 concentration. The levels of malonyldialdehyde (MDA), which is a bio-marker for lipid peroxidation was used to determine the level of oxidative stress in the kidney, liver and brain. The kidney and liver were also subjected to an induced free radical mediated lipid peroxidation, by exposing the tissue to increasing known concentrations of H202 (2.5mM - 15mM). The level of lipid peroxidation was used to assess the tissues antioxidant buffering capacity to an induced free radical "attack". The results have shown that the DSS strain may have a compensatory increase in vascular SOD levels, to counter an increase in 02-. SOD levels were significantly lower during salt loading. The GPx levels were significantly lower in the DSS strain, and showed a slight increase during salt loading. The results demonstrate that the DSS strain has a compromised antioxidant status compared to the DSR strain. The plasma H202concentration displayed non-significant changes in the DSS strain, however salt loading did result in a non-significant increase in the plasma H202 concentration in the DSS strain. The GPx : HZ02 ratio, demonstrated an inadequate increase in GPx levels during salt loading to neutralise this non-significant increase in HzOz concentration. The kidney showed an increased level of in vivo lipid peroxidation, which could implicate increased tissue damage, and thus confirm the kidney as being a target organ during the hypertensive state. The liver and brain showed non-significant differences in the level of in vivo lipid peroxidation and are therefore thought not to be target tissue in the hypertensive state. The kidney displayed a decreased antioxidant buffering capacity to the induced free radical "attack", thereby demonstrating the tissue's decreased ability to neutralise an increased free radical level. Although the liver displayed a "normal" level of in vivo lipid peroxidation, it also displayed a decreased antioxidant buffering capacity to an induced free radical "attack", showing that the liver is able to cope with in vivo free radical levels, but at higher free radical levels, its loses its ability to quench a free radical "attack" and thereby minimise lipid peroxidation. The in vivo lipid peroxidation levels of the kidney, liver and brain have shown that tissues have varying abilities to cope with tissue oxidative stress, and behave differently, in their free radical quenching abilities. These results have shown that a compromised free radical and antioxidant status results in oxidative damage to the tissue responsible for regulating blood pressure. / Thesis (M.Med.Sc.)-University of KwaZulu-Natal, Westville, 2006.

Cell wall loosening and degradation are important processes in major stages of plant development including fruit ripening. Three main mechanisms have been proposed to contribute towards cell wall polysaccharide degradation in vivo: enzymic hydrolysis by endopolygalacturonase (EPG), enzymic elimination by pectate lyase (PL), and non-enzymic scission by hydroxyl radicals (•OH). However, little idea as to which of these three mechanisms predominates in homogalacturonan degradation especially during fruit ripening. This study presents an attempt to discover the respective contribution of those three mechanisms of attack. The strategy used to achieve the objective of this study was to identify and measure homogalacturonan molecules that exhibit symptoms of each mechanism of attack. A method that was developed in this study is a fluorescent labelling method mainly to study the •OH attack on pectic polysaccharides. This labelling method is based on the ability of 2-aminoacridone (2-AMAC) to reductively aminate oxo groups of sugar moieties followed by exhaustive digestion with Driselase. In a model in-vitro experiment, the developed novel fluorescent labelling method, when applied to homogalacturonan, that had been attacked by •OH (Fenton reagent), produced at least three fluorescent ‘fingerprint’ compounds, separable by high-voltage paper electrophoresis (HVPE) based on their charge/mass properties at pH 6.5 and also by high pressure liquid chromatography (HPLC) on a C18 column with a fluorescence detector at λem= 520 nm. These fingerprint compounds include: a monomer, 1A*; a dimer, 2A*; and an unidentified compound, X*. In-vivo application with alcoholinsoluble residue (AIR) of seven species of fruit (pear, mango, banana, apple, avocado, strawberry and strawberry tree fruit) at three stages of softening produced at least two fluorescent fingerprint compounds: a monomer, 1AF and a dimer, 2AF. XF, an interesting compound found in a few samples in in-vivo experiments, showed electrophoretic mobility similar to X*; however, the retention time of this compound on HPLC did not agree with that of X*. 2AF was suggested to be exclusive evidence for •OH attack in vivo while 1AF was suggested to be a useful evidence not only to reveal •OH attack but also to reveal EPG and PL attack on pectic polysaccharides during fruit softening. HVPE and HPLC results showed an increasing pattern of 2AF in mango, banana, avocado and strawberry tree fruit, which indicated progressive •OH attack on pectic polysaccharides during the softening process. There was no clear evidence of 2AF at any stage of softening in apple and strawberry, which may suggest that fruit softening in apple and strawberry was not associated with •OH attack. On the other hand, HVPE analysis of 1AF showed and increasing pattern in pear, mango, banana, avocado and strawberry tree fruit, which may indicate EPG, PL and/or •OH attack during fruit softening. Production of these fluorescent fingerprint compounds provides good evidence for •OH attack on pectic polysaccharides, and has the potential to give useful information for EPG and PL attack in vivo.

The studies described in this dissertation were performed with the goal of understandingthe function of antioxidant compounds delivered in vivo to rodents and the implication of theresults towards oxidative stress (OS)-related neurodegenerative disorders with particularemphasis on Alzheimer's disease (AD). OS has been implicated in AD and is characterized byextensive oxidative damage to protein, lipids and DNA. A major thrust of this dissertation workwas to gain insight into antioxidant properties of compounds used in the following studies andtheir efficacy as potential therapeutics for treatment of OS-related disorders.D609, a glutathione (GSH) mimetic is known to trap OH. Radicals, scavenge H2O2 andreduce the A?? (1-42)-induced OS and cytotoxicity in neurons. The present dissertation studyshowed in vivo protective effect of D609 in synaptosomes and mitochondria isolated fromgerbils against OS mediated by Fe2+/H2O2, AAPH, and A?? (1-42). Upon intraperitonial (i.p.)injection of gerbils, D609 showed protection of subsequently isolated brain moieties against OS.In vivo administration of D609 also modulates brain GSH levels and increases the activity of keyGSH-related enzymes, thereby likely provides a protection against OS.Adriamycin (ADR), a quinone-containing chemotherapeutic, is known to produce ROS inheart. Patients under treatment with ADR often show persistent changes in cognitive function(effect called as chemobrain by patients). Upon i.p. injection, ADR causes OS, increasesexpression of multidrug resistant protein-1 (MRP-1) in brain and alters GSH levels and itsrelated enzyme activities. ??-Glutamyl cysteinyl ethyl ester (GCEE) is known to increase GSHlevels in brain, in vivo. Research reported in this dissertation shows that in vivo GCEE reversesthe ADR-mediated OS in mice brain.N-acetylcysteine (NAC), a GSH precursor provides the limiting substrate cysteine inGSH synthesis. Previously, our laboratory showed increased GSH levels post i.p. injection ofNAC and reduces OS in synaptosomes treated with acrolein. The present study showed thatNAC given in drinking water to APP/PS-1 mice, a model of AD can significantly reduce OS.These results provide a potential therapeutic intervention by antioxidants that can modulateGSH in OS-mediated neurodegenerative disorders.

A model for studying magnetisation during FC-PEDRI experiments has been developed and verified experimentally. The optimum EPR irradiation frequency, which maximises the Overhauser enhancement while minimising the RF power deposition in sample, was investigated using the FC-DNP technique. Experiments to verify the model were carried out in the EPR frequency range between 20 and 180 MHz and with different applied ERP RF power for free radicals with different EPR linewidths. The optimum EPR irradiation frequency was found to be dependent on the applied power level and on the EPR linewidths. Methods to obtain NMR images with T₁-weighted were also investigated. The most successful method was found to be a combination of Inversion Recovery and FC-PEDRI. This technique yields both high <I>T</I>₁ contrast between samples and good contrast between images with different <I>T</I>₁ values. The free radical distribution is recorded with the same SNR as those collected with the conventional FC-PEDRI techniques. Rapid imaging of FC-PEDRI has also been studied. The number of EPR irradiation periods can be optimised to give a good free radical distribution image while reducing the power deposition in the sample. With 4 EPR irradiation periods, the difference image displays the free radical distribution comparable with the conventional technique (64 EPR irradiation periods). The power deposition in the sample is reduced by the factor of 16 and acquisition time is reduced by a factor of 4. Finally, inversion recovery spin preparation has been added to the hybrid fast sample. It was found that an IR hybrid FISP FC-PEDRI pulse sequence could be used to generate <I>T</I>₁ contrast in images which show similar detail and intensity of the free radical distribution as those obtained using hybrid FISP-PEDRI.

No description available.

Laser Magnetic Resonance (LMR) is a very sensitive, accurate and high resolution spectroscopic technique. Transitions of paramagnetic species are brought into coincidence with a fixed frequency laser using Zeeman tuning. Three different LMR spectrometers are described, two of which use the CO laser as a radiation source and the other used optically pumped far-infrared lasers. These LMR spectrometers have been used to study four radicals, germanium hydride (GeH), tellurium deuteride (TeD), iron hydride (FeH) and iron deuteride (FeD). Transitions in the fundamental and first hot bands of the GeH radical have been detected by CO LMR. The transitions occur within both ²Π_{¹andfrasl;₂} and ²Π_{³andfrasl;₂} manifolds. These data have been fitted with previously published data for GeH and GeD to determine the parameters of a single model effective Hamiltonian which describes all naturally occurring isotopomers. Details of the Hamiltonian are given. The same Hamiltonian was used to model transitions in the fundamental and first two hot bands of the TeD radical that were also recorded using CO LMR. Resonances from the seven most abundant isotopomers, including the two with I = ½, have been identified. Seven transitions in the fundamental band of FeH have been observed using Faraday CO LMR. Due to the complicated electronic structure for FeH it is not possible to model these data using a single model effective Hamiltonian. It has been possible to fit the parameters of a second order Zeeman expression to these FeH data and so determine accurate zerofield transition wavenumbers for six of these transitions. Pure rotational transitions in the ground state of FeD have been observed using FIR LMR. As for FeH the parameters of second order Zeeman expressions can be fitted to these transitions and zero field wavenumbers determined.

A liquid nitrogen cooled, carbon monoxide laser magnetic resonance spectrometer was used to study mid-infrared vibration-rotation transitions in the gaseous free radical NCO, in its ̅X²Π state, at very high resolution. The use of an intracavity absorption cell made possible the observation of some transitions with sub-Doppler resolution. Developments to the spectrometer extended the range of operation of the CO laser. Most importantly, a CO laser operating on overtone transitions, Δν = 2, was operated in Oxford. The Δν = 2 CO laser operates over the range 2450-3800cm^-1 (4.08-2.63 μm), and the Δν = 1 CO laser over the range 1200-2100 cm^-1 (8.33-4.76 μm). NCO exhibits a Renner-Teller effect in its ground electronic state, an interaction between the motion of the electrons and the bending motion of the nuclei. Vibration-rotation transitions were observed in a sequence of bands involving the excitation of the out-of-phase stretching vibration, in the region of 1900cm^-1. Some of the bands involved the excited bending vibration. The Zeeman effect behaviour of the molecular energy levels, particularly in the ²Σ vibronic states, clearly showed the manifestation of the Renner-Teller effect. The Zeeman effect in the ²Σ vibronic states was considered in detail. Many of the ²Σ LMR spectra were recorded at sub-Doppler resolution. NCO is complicated to model, and unassigned LMR spectra remain. A harmonic Renner-Teller model was developed for the analysis. It was implemented by constructing an explicit matrix representation of the single electronic state N² effective Hamiltonian, which was diagonalised exactly. A new term in this Hamiltonian, describing centrifugal distortion corrections to the Renner-Teller coupling term, was developed for the ²Σ vibronic states in order to account for anharmonic vibronic interactions.