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In this thesis, a joint experimental and theoretical study of the dynamics of atom- molecule collisions will be presented. The focus of this study will be conducted towards the precise, quantitative theoretical description of the collision dynamics in terms of the vectors <strong>k</strong>, <strong>k'</strong>, <strong>j</strong>, and <strong>j'</strong> (the incoming and outgoing relative momenta associated with the collision, and the initial and final rotational angular momentum of the target diatom respectively) that define the collision, and on the experimental measurement of these vector correlations. Chapter 1 is introductory, providing an overview of the field of reaction dynamics, and the experimental and theoretical methods that exist to treat the collisions of atoms and molecules. This work focusses on the collisions of the spherically symmetric rare gas atoms Ar and He with the open-shell heteronuclear diatomic radicals NO and OH. In particular, the fully quantum state-to-state resolved differential cross-sections for the collisions of NO(X) with Ar (reflecting the <strong>k</strong> - <strong>k'</strong> vector correlation), and the collisional cross-sections for the depolarisation of the rotational angular momenta of the NO(A) and OH(A) radicals (reflecting the <strong>j</strong> - <strong>j'</strong> vector correlation) have been determined experimentally and theoretically, and the results have been discussed and interpreted in terms of the mechanistic aspects of the collision dynamics, and the features of the potential energy surface that give rise to these. In Chapter 2, the atom-molecule systems that constitute the subject of this work will be introduced in detail. The close-coupled quantum mechanical and quasi-classical trajectory scattering calculations performed as part of this work will be discussed in greater detail, providing a greater insight into molecular scattering theory. The explicit calculation of the quantities of interest (most significantly the differential cross-section, and the tensor/depolarisation cross-sections) will be presented for the quasi-classical and quantum cases, offering the most transparent definitions of these quantities. Finally the mathematical description of the spatial probability distribution of a single vector, a pair of correlated vectors, and three correlated vectors is described in detail, including a discussion of the quantum mechanical nature of the vectors in question. Chapter 3 describes the experimental measurement of the differential cross-sections for the collisions of NO(X) with Ar. A hexapole was used to select uniquely those NO molecules in the |&Omega; = 0.5; j = 0.5, f> quantum state, allowing full experimental quantum state-to-state selection for the first time. A crossed molecular beam apparatus with (1+1') resonantly enhanced multi-photon ionisation detection coupled with velocity mapped ion- imaging was employed to measure the differential cross-section, and the details of the experimental set-up are provided. The accurate extraction of the true, centre of mass frame differential cross-section from the laboratory frame information yielded by the experiment is something of an involved process, and much of this Chapter will be concerned with the development of a Monte Carlo method to achieve this end. In Chapter 4, the experimental and theoretical fully quantum state-to-state resolved differential cross-sections for the collisions of NO(X) with Ar are presented, having been measured for the first time. Full resolution of the initial parity of the rotational wave- function of the NO molecule has enabled the observation of parity dependent structures within the differential cross-section, and the origin of these structures has been investi- gated, employing quasi-classical, quantum mechanical and semi-classical methods in order to elucidate the mechanism by which they arise. Chapter 5 introduces the measurement of the collisional depolarisation of the rotational angular momentum of the diatom. Rate constants for the collisional depolarisation of <strong>j</strong> were measured by monitoring the time dependence of the amplitude of Zeeman and hyperfine quantum beats in the (1+1) laser induced fluorescence decays of an ensemble of NO(A) or OH(A) radicals in the presence of a series of background pressures of a collision partner. The creation and subsequent evolution of the polarisation of <strong>j</strong> induced by the absorption of polarised laser light is described, and the magnitude of this polarisation is linked to the amplitude of the quantum beat in the laser induced fluorescence decay. The extraction of the depolarisation cross-sections from the raw experimental data is discussed, and a Monte Carlo simulation of the experiment is described to account for any additional unwanted experimental factors that may contribute to the loss of polarisation of <strong>j</strong>. A formalism is also introduced that makes use of the tensor opacities to recover spin- rotation conserving and spin-rotation changing open-shell rotational energy transfer and depolarisation cross-sections from the intrinsically closed shell quasi-classical trajectory scattering calculations. In Chapter 6, the experimentally determined collisional depolarisation cross-sections for the collisions of NO(A) with He/Ar, and of OH(A) with Ar at collision energies of 39 meV/757meV are presented along with their theoretical counterparts. The relative magnitudes of the cross-sections are rationalised in terms of the potential energy surface over which the collision takes place, and the importance of spin-rotation conserving and spin-rotation changing transitions in the depolarisation process is assessed. A detailed study of the ensemble of quasi-classical trajectories is performed to determine the character of the various atom-molecule collisions, and to identify which conditions lead to the most efficient depolarisation of <strong>j</strong>. The relative importance of the potential energy surface and the collision kinematics is also assessed at this point. The results presented in this thesis thus investigate two complementary expressions of the collision dynamics, the <strong>k</strong> - <strong>k'</strong> and <strong>j</strong> - <strong>j'</strong> vector correlations, and encompass a variety of collision partners exhibiting vastly differing collision characteristics. As such, this work serves as an illustrative overview of atom-molecule scattering dynamics, containing both experimental and theoretical reflections of the collision dynamics, and relating this information back to the fundamentals of scattering theory.

The focus of this dissertation is to decipher the previously unknown reaction dynamics of NO3 photodissociation. Although the NO + O2 products are known to catalyze atmospheric ozone destruction, the mechanism by which these products are formed has remained a mystery, and no energetically accessible transition state has ever been calculated. Using velocity map ion imaging experiments to carefully study the stereochemistry of the product fragments combined with theoretical calculations performed by Drs. Xiao, Maeda, and Morokuma at Kyoto University, we have determined that the reaction proceeds exclusively via the unusual "roaming mechanism," with no evidence of a competing traditional transition state pathway. Within, the significance of this discovery is discussed in regards to both the NO3 system and roaming dynamics in general, for which this system has provided new insight.

The product state specific stereodynamics of the photon–initiated reaction of O(¹D₂) with H₂ has been investigated by polarised Doppler–resolved laser induced fluorescence, under room temperature bulb conditions. Product state resolved differential cross sections, excitation functions and rotational angular momentum alignments are reported for the following product channels, O(¹D₂) + H₂(¹Σ⁺_g ; v = 0) -> OH(X²Pi; v' = 0;N' = 14; f) + H(²S). at a mean collision energy of 12 kJ mol^-1. The data are compared with extensive state resolved quasi–classical trajectory (QCT) calculations of the linear and angular momentum distributions and excitation functions conducted on the Schinke–Lester (SL1) and K ab initio ground state (1¹A') potential energy surfaces. Overall, good agreement is obtained between the QCT calculated and experimentally determined stereodynamical features. The results are discussed in light of other recent work on this prototypical insertion reaction, and on the related systems of O(¹D₂) + HD and CH₄.

This thesis describes the development of a new experimental technique for studying tunable-collision-energy, quantum state-selected, low-temperature ion-molecule reactions. This has been achieved through the combination of a Stark decelerator for neutral dipolar molecules, and a linear Paul ion trap. The Stark deceleration process for ND₃ was examined in detail, through the analysis of experimental data in combination with newly written molecular dynamics simulation programs. In order to prepare a sample of molecules appropriate for collision studies, additional beamline components were introduced after the decelerator. These components were: two hexapoles, to provide transverse focussing, maximising the molecular density; a molecular buncher, providing increased longitudinal velocity resolution; and a fast-opening shutter, to separate decelerated molecules from undecelerated molecules. The sympathetic-cooling of Xe⁺ ions and ND⁺₃ ions by laser-cooled, Coulomb crystallised ⁴⁰Ca⁺ ions with the ion trap was also studied. In particular, the stable trapping of Xe⁺ was demonstrated for the first time, and the experimental developments that led to this are discussed. The work in this thesis represents significant progress towards studying the reaction of tunable-energy ND₃ in the |j,mk> = |1,−1> quantum state with cold Xe⁺ ions. Ion-molecule reactions utilising ND₃ molecules electrostatically guided through the Stark decelerator were performed. It was observed that the main source of error in these experiments was in the calculation of the initial number of Xe⁺ ions that had been sympathetically cooled into the Coulomb crystal. The sensitivity of the crystal morphology to the number of Xe⁺ ions was evaluated using molecular dynamics simulations. Strategies have been developed to reduce this uncertainty in future studies. In addition to experimental work, the theory of low temperature ion-molecule reactions has been developed further. The temperature at which classical and quantum mechanical calculations diverge due to purely statistical effects has been investigated using different model intermolecular potentials, for closed-shell and open-shell species, and in the ground and rotationally excited states. From the results of these calculations, several promising candidate reactions have been suggested that might exhibit statistical quantum behaviour at experimentally achievable temperatures.

This Thesis describes the synthesis, structural, photochemical and photophysical studies of modified retinal protonated Schiff bases in solution. Ultrafast laser spectroscopy, NMR and circular dichroism studies were employed to investigate speed, yield and selectivity of photoisomerisation in these chromophores. <b>Chapter 1</b> introduces relevant biological, photophysical and photochemical aspects of retinal protonated Schiff base photoisomerisation. It includes an overview of synthetic approaches to modified retinal synthesis pertinent to this this work. <b>Chapter 2</b> discuses the investigation of the hypothesis that twisting of the chromophore’s isomerising double bond is responsible for ultrafast photoisomerisation in the protein environment. In these studies it was discovered that addition of a methyl group to the retinal backbone in solution results in protein-like photophysics. <b>Chapter 3</b> presents photopysical and photochemical studies of modified all-trans retinal protonated Schiff bases that culminate in a qualitative model for the influence of electronic factors on photochemical and photophysical behaviour of these chromophores in solution. <b>Chapter 4</b> describes structural and photophysical investigations of 11-cis retinal protonated Schiff bases. NMR studies indicate conformational flexibility of the chromophores. The first synthetic solution-based chromophore to reach rhodopsins’s speed of photoisomerisation is described. <b>Chapter 5</b> presents an attempt to gain conformational information on retinal protonated Schiff bases using circular dichroism spectroscopy. Transfer of stereochemical information from the covalently attached stereogenic centre to the retinal backbone is demonstrated.

In this thesis, resonance enhanced multiphoton ionisation (REMPI) in combination with time-of-flight mass spectrometry (TOF-MS) has been used to detect nascent photofragments resulting from the UV dissociation of a variety of small molecules. The translational anisotropy and angular momentum polarisation of these photofragments has been measured and used to elucidate the underlying photodissociation dynamics. Firstly, the photodissociation of NO₂ at 320nm has been investigated and the vector correlations of the nascent NO photofragments have been measured in terms of a set of semi-classical bipolar moments. The measured angular momentum alignment is found to be consistent with an impulsive model for the dissociation, with <b>&mu;</b> and <b>&nu;</b> in the same molecular plane and both preferentially perpendicular to <b>J</b>, whilst angular momentum orientation measurements provide evidence for an additional torque due to the O-N-O bond opening during dissociation. These measurements were taken using a rotationally cooled, skimmed molecular beam and significant deviations were found between the bipolar moments measured using this source and previous measurements using a rotationally hotter source. The effect of parent molecular rotations on the measured bipolar moments has been quantified and successfully used to explain these deviations. The photodissociation of Cl₂ has been studied in the wavelength region (320-350)nm. UV absorption in this wavelength region may result in two dissociation channels, (Cl+Cl) and (Cl+Cl*), and the angular momentum polarisation of both the Cl(²P_3/2) and Cl*(²P_1/2) photofragments has been measured. This angular momentum polarisation has been reported in terms of a polarisation parameter formalism which, together with the measured translational anisotropies, has been used to determine the different potential energy surfaces contributing to the dissociation process. Translational anisotropy measurements of the Cl(²P_3/2) fragments have shown that, for the ground-state channel, dissociation results from a pure perpendicular transition to the C state, whilst alignment measurements show that non-adiabatic transitions to the A state are significant at large internuclear separations. The measured alignment parameters are found to be relatively constant for all dissociation wavelengths and are consistent with theoretical predictions. Translational anisotropy measurements of the Cl(2P_1/2) photofragments show that, for the excited-state channel, dissociation occurs following a mixed parallel and perpendicular excitation to the B and C states respectively and the interference between these two dissociation pathways has been shown to result in angular momentum orientation. The predissociation dynamics of the C ³&Pi;_g (&nu;=0) and (&nu;=1) Rydberg states of O₂ has been extensively studied. The translational anisotropy and angular momentum alignment of the O(³P) and O(¹D) photofragments resulting from this predissociation has been measured in terms of a polarisation parameter formalism, which has been extended for a two-photon dissociation process. Measurements have been taken at various fixed wavelengths within the two bands in order to investigate the differences in the predissociation dynamics of intermediate levels with different values of |&Omega;|(=0,1,2 in this case). The translational anisotropy is found to be dependent on the dissociation wavelength with the variations found to be consistent with rotational depolarisation due to the long lifetime of the excited C state. All photofragments have been found to be aligned, with the relationship between the measured O(³P) and O(¹D) alignment being found to be consistent with a diabatic model of the dissociation. In addition, all photofragments are found to display coherent orientation resulting from interference between two possible two-photon absorption pathways. The measured orientation is affected by rotational depolarisation due to the long lifetime of the excited C state; once this effect is accounted for the orientation is found to be nearly constant over all dissociation wavelengths. The origin of the coherent orientation is attributed to two-photon absorption to different spin-orbit components of the C state.

Physisorption and reaction at silicon surfaces of a series of brominated organic molecules: bromoethane, 1,2-dibromoethane, 1-bromopropane, 1-bromobutane and 1-bromopentane were examined by Scanning Tunneling Microscopy (STM). On Si(111)-7×7, a widely-spaced “one-per-corner-hole” pattern was observed, formed by the physisorption and reaction of several alkyl bromides. This “one-per-corner-hole” pattern suggested long-range repulsion between the adsorbates. Density Functional Theory (DFT) calculations, performed by others in parallel with these experiments, showed that this long-range repulsion was due to lateral charge transfer in the Si(111)-7×7 surface consequent on the physisorption of an alkyl bromide or chemisorption of a Br atom. The reaction rate of bromine ‘abstraction’ (transfer of a Br-atom from the adsorbate to the silicon) was examined for two physisorbed states of 1 bromopentane on Si(111)-7×7, one vertical and one horizontal, each distinguishable by STM. The energy barrier was found to be significantly lower for abstraction of Br-atom from the vertical than for the horizontal 1 bromopentane, both for thermal and electron-induced reaction. This finding accords with previous DFT calculations for methyl bromide, for which theory exhibited a clear preference for a vertical transition state in the bromination of Si(111)-7×7. The effect of alkyl chain-length on the rate of thermally-induced dissociative attachment reactions was investigated for a series of primary bromo-alkanes (bromoethane, 1-bromopropane and 1-bromobutane) on a different face of silicon; Si(100)-c(4×2). These three bromo-alkanes all physisorbed exclusively ‘inter-row’, bridging the gap between Si dimer-rows of Si(100)-c(4×2). Thermal reaction was highly ‘localized’, i.e. the chemisorbed Br-atom was formed directly below the parent bromo-alkane. The thermal barrier heights were found experimentally to increase systematically with chain length. This trend was interpreted, on the basis of DFT calculations performed by the author, as being due to the extra energy required to lift the alkyl group in going from the initial physisorbed state to the more-nearly vertical transition state.