In the mid-eighties, the development of radioactive-ion beams enabled the exploration ofregions of the nuclear landscape away from the valley of stability. Close to the neutrondripline, in the light neutron-rich region, halo nuclei were observed. These nuclei exhibit asurprisingly large matter radius and a strongly clusterized structure. These two featurescan be explained by the weak binding of one or two neutrons which allows them to tunnelfar from the rest of the nucleons, surrounding the nucleus by a diffuse halo. These nuclearstructures have challenged the usual description of the nucleus, described as a compactmany-body object with nucleons piling up into well defined orbitals. Because they areshort-lived, these nuclei are often studied through reaction processes, such as elasticscattering, breakup and knockout. To infer precise information from the experimentaldata, an accurate reaction model coupled with a realistic description of the nucleus isneeded.Compared to other state-of-the-art methods, the eikonal approximation is very cheapfrom a computational viewpoint. This model assumes that the projectile-target relativemotion does not differ much from the initial plane wave. It also makes the adiabaticapproximation, which sees the internal coordinates of the projectile as frozen during thecollision. These two assumptions hold for reactions occurring at high energy, i.e. above60 MeV/nucleon, in which the deflection of the projectile by the target is small and thecollision time is brief.In this thesis, I focus on improvements of the eikonal approximation. First, I studythe extension of the validity of the eikonal model down to 10 MeV/nucleon, in the energyrange of the facilities HIE-ISOLDE at CERN and ReA12 at the upcoming FRIB. To thisend, I analyse different corrections to the eikonal approximation, which account for thedeflection of the projectile by the target. I assess their accuracy for the elastic-scatteringand breakup observables of one-neutron halo nuclei at 10 MeV/nucleon. Next, I developa dynamical correction to the eikonal approximation, which applies to both nuclear andCoulomb interactions while conserving the eikonal numerical cost. I study this correctionin the cases of breakup reactions of one-neutron halo nuclei on light and heavy targets.Then, I investigate which nuclear-structure information can be inferred from knockoutreactions of one-neutron halo nuclei. To do so, I conduct a sensitivity analysis of theirobservables to the nuclear structure of the projectile, described within a halo effectivefield theory. In particular, I study the influence onto the cross sections of the ground-statewave function, the presence of subthreshold bound states and resonances. / Doctorat en Sciences de l'ingénieur et technologie / info:eu-repo/semantics/nonPublished

Caged compounds are a class of photosensitive reagents used to stimulate cells with spatial control down to a sub-cellular level, and millisecond temporal control. They comprise of biologically important molecule which is modified with a photolabile protecting group. In the absence of light, caged compounds are physiologically silent but irradiation with light induces the release of biologically active species. Illumination under two-photon conditions is particularly advantageous as it enables restriction of the photolysis volume to ~1 fL and it provides deeper penetration into scattering samples. This thesis reports the development of new protecting groups for two-photon uncaging in neuroscience. Mechanistically, the deprotection in these novel groups is designed to operate via an intramolecular photoinduced electron transfer (PeT) between the absorbing unit (electron-donor) and the release module (electron-acceptor). The modular design of these cages ensures separation of absorption and release steps, and allows each process to be tuned and optimized independently. Chapter 1 provides an introduction to the two-photon absorption phenomenon and a historic overview of the uncaging technique. It also discusses recent advances in the development of two-photon sensitive probes used in neuroscience. Chapter 2 describes the exploration of molecular designs for novel protecting groups. A two-photon absorbing dye (electron-donor; fluorene dye) and three different release units (electron-acceptors; nitrobenzyl, pyridinium and phenacyl) were identified as suitable building blocks for the current project. Efficiency of the intramolecular electron transfer between chosen units was evaluated using model dyads which constitute covalently linked electron-donor and acceptor species. Chapter 3 is devoted to the synthesis and photophysical evaluation of nitrobenzyl-based protecting group. Chapter 4 describes the preparation of pyridinium-derived protecting group and demonstrates PeT-mediated release of tryptophan and GABA under one- and two-photon excitation. Hydrolytic instability of pyridinium esters is highlighted. Chapter 5 reports the synthesis, hydrolytic stability and one-photon uncaging efficiency of phenacyl-based derivatives. Chapter 6 discusses properties of developed caged compounds and compares them with other compounds reported in literature. It contains overall conclusions and outlook for the current project. Chapter 7 details the experimental procedures and the characterization of compounds synthesized during this work.

This thesis describes the development of a relatively novel technique for the gen- eration and subsequent trapping of cold species. Molecules in a pulsed supersonic expansion are photolysed, such that the centre-of-mass velocity vector of one of the fragments is equal in magnitude but opposed in orientation to the lab-frame velocity of the precursor molecule. This technique, known as ‘Photostop’, leaves a fraction of the fragments with a narrow velocity distribution, centered around zero velocity in the lab-frame. They can be shown to have zero velocity by changing the time between photodissociation and ionisation; fragments with a high kinetic energy will leave the ionisation volume prior to interrogation. The underlying velocity distribu- tion is uncovered by using the velocity-map imaging technique, and the temperature of the fragments can be determined. The method was originally optimised for the molecular case. Cold NO has been produced from the dissociation of NO₂ molecules, and a single rotational state has been shown to remain in the ionisation volume 10 μs after dissociation, implying a sample temperature of 1.17 K. Using the optimised experimental conditions de- rived from the velocity cancellation of NO, the atomic case is demonstrated for the dissociation of Br₂ to give zero-velocity Br fragments. The Br atoms are seen for delay times in excess of 100 μs, showing the greater applicability of the method to the atomic case. The temperature of the residual atoms is shown to be in the milliKelvin regime, as determined through detailed Monte Carlo simulation of the motion of the stopped atoms. The possibility of trapping the ultracold Br atoms in a magnetic field is explored, and a quadrupolar trap created between two per- manent bar magnets is demonstrated to confine the atoms spatially, within the ion extraction optics, for delays in excess of 1 ms. The Photostop technique is intended to be a stepping stone on the way to widening the number of chemical species available for study in the ultracold regime. The possibility of improvements to the experiment is considered, in order to increase the efficiency of the experiment such that the number density becomes high enough to be viable as a source of atoms for use in cold chemical reactive studies. The possibility of extending the method so as to be used as a tunable velocity source of atoms is also discussed.

This thesis presents the study of a selection of gas phase chemical processes using time-resolved Fourier transform infrared (FTIR) emission spectroscopy. Such processes include molecular energy transfer, chemical reaction and photodissociation. The major focus of this thesis was the investigation of collisional energy transfer from the electronically excited states of NO and OH, with particular attention paid to the fate of the electronic energy. NO A²&Sigma;⁺(v = 0) is prepared by laser excitation, pumping the overlapped Q₁ and P₂₁ band heads of the NO A-X (0,0) transition at 226.257 nm. The quenching of this state by O₂ and CO₂ was studied. Experiments were performed to investigate what channels contribute to the quenching process, the branching ratio of these different channels and the partitioning of energy among the various products. Quenching by O₂ was found to proceed mostly through non-reactive channels. High vibrational excitation of NO X ²&Pi; was observed, with population detected in v = 22, representing 79% of the available energy. The O₂ product was found to be formed in more than one electronic state: the ground state, X ³&Sigma;^-<sub style='position: relative; left: -.3em;'>g</sub>, and a high-lying electronically excited state, such as the A ³&Sigma;⁺<sub style='position: relative; left: -.5em;'>u</sub>, A' ³&Delta;_u or c ¹&Sigma;^-<sub style='position: relative; left: -.5em;'>u</sub> states. A reactive channel producing vibrationally excited NO₂ was observed, but was found to be a minor process with an upper limit of 18% for the branching ratio. In contrast the quenching of NO A ²&Sigma;⁺(v = 0) by CO₂ was found to proceed predominately by reaction, with a branching ratio of 76 %. While emission from NO₂ was observed, it was weak, and therefore it was concluded that the main reaction products were CO, O(³P) and NO X ²&Pi;(v = 0). The nascent strong CO₂ v3 emission band from the non-reactive channel exhibited a large red-shift from its fundamental position. This indicates that the CO₂ vibrational distribution is significantly hotter than statistical. Investigations were then performed studying the quenching of NO A ²&Sigma;⁺(v = 1) by NO and CO₂, with both systems exhibiting similar characteristics to the quenching of the ground vibrational level of NO A ²&Sigma;⁺. From comparison of the emission intensity of the CO fundamental and CO₂ v3 mode following quenching of the v = 0 and 1 levels of the NO A ²&Sigma;⁺ state, it was concluded that the branching ratio for reactive quenching was larger in the latter case. Secondly, experiments were performed to measure the rate constants for the quenching of NO A ²&Sigma;⁺(v = 0) by the noble gases. The noble gases are inefficient quenchers of electronically excited NO and therefore careful experimental design was required to minimise the influence of impurities on the results. All the rate constants were found to be of the order of 10^-14 cm³ molecule^-1 s^-1. The value for Xe was 50 times smaller than reported previously in the literature. In light of this new measurement, a re-analysis of experiments, performed previously in the group, on the electronic quenching of NO A ²&Sigma;⁺(v = 0) by Xe was performed. A very hot vibrational distribution of NO X ²&Pi; was obtained. Next, the collisional quenching of OH A ²&Sigma;⁺(v = 0) by H₂ was investigated. OH radicals were generated in situ by the photolysis of HNO₃ at 193 nm, which were excited to the A ²&Sigma;⁺(v = 0) state on the overlapped Q₁(1) and P₂₁(1) rotational lines at 307.935 nm. Reactive quenching was found to be the major pathway, in agreement with the literature. Copious emission from vibrationally excited water was observed. Comparison of this emission with theoretical calculations revealed a hotter distribution than predicted. It was concluded that the energy channelled into the vibrational modes of H₂O is in excess of 60% of the available energy. Experiments performed with D₂ allowed the non-reactive channel to be studied; a cold vibrational distribution of the OH X ²&Pi; was observed. Finally the reaction between CN radicals and cyclohexane was studied. CN was generated by the photolysis of ICN at 266 nm. Prompt emission from HCN in the C-H stretching region was observed meaning the new bond was formed in a vibrationally excited state. Analysis of the emission revealed HCN was populated up to v3 = 2. Excellent agreement with the results of a theoretical study of the system was found.

The outcome of chemical reactions proceeding via radical pair (RP) intermediates can be influenced by the magnitude and direction of applied magnetic fields, even for interaction strengths far smaller than the thermal energy. Sensitivity to Earth-strength magnetic fields has been suggested as a biophysical mechanism of animal magnetoreception and this thesis is concerned with simulations of the effects of such weak magnetic fields on RP reaction yields. State-space restriction techniques previously used in the simulation of NMR spectra are here applied to RPs. Methods for improving the efficiency of Liouville-space spin dynamics calculations are presented along with a procedure to form operators directly into a reduced state-space. These are implemented in the spin dynamics software Spinach. Entanglement is shown to be a crucial ingredient for the observation of a low field effect on RP reaction yields in some cases. It is also observed that many chemically plausible initial states possess an inherent directionality which may be a useful source of anisotropy in RP reactions. The nature of the radical species involved in magnetoreception is investigated theoretically. It has been shown that European Robins are disorientated by weak radio-frequency (RF) fields at the frequency corresponding to the Zeeman splitting of a free electron. The potential role of superoxide and dioxygen is investigated and the anisotropic reaction yield in the presence of a RF-field, without a static field, is calculated. Magnetic field effect data for Escherichia coli photolyase and Arabidopsis thaliana cryptochrome 1, both expected to be magnetically sensitive, are satisfactorily modelled only when singlet-triplet dephasing is included. With a view to increasing the reaction yield anisotropy of a RP magnetoreceptor, a brief study of the amplification of the magnetic field experienced by a RP from nearby magnetite particles is presented. Finally in a digression from RPs, Spinach is used to determine the states expected to be immune from relaxation and therefore long-lived in NMR experiments on multi-spin systems.

This thesis presents applications of near infrared diode lasers to high resolution spectroscopy of transient radical species. Firstly, time resolved near infrared laser gain versus absorption is utilised in Chapter 2 to determine the I∗ quantum yield following ultraviolet photolysis of iodobenzene and its fluorinated analogues. The experimental method is first confirmed by comparison with literature values of the quantum yield for iodomethane photolysis, returning a quantum yield of Φ(I∗) = 0.71 ± 0.04 in good agreement with the literature, before being applied to determine the I∗ quantum yield following 248 nm and 266 nm photolysis of iodobenzene (Φ(I^∗) = 0.28 ± 0.04) and pentafluoroiodobenzene (Φ(I^∗) = 0.32 ± 0.05). The I^∗ quantum yields for 4-fluoroiodobenzene, 2,4-difluoroiodobenzene and 3,5-difluoroiodobenzene are also reported in order to determine the effect of selective fluorination on the dynamics of the photodissociation process. This work complements velocity-map ion imaging studies and spin-orbit resolved ab initio calculations of the ultraviolet photolysis of these compounds. Chapter 3 details the development of a narrow-bandwidth tunable continuous wave ultraviolet radiation source, through sum frequency mixing of tunable near infrared diode lasers with a fixed frequency, high powered, solid state laser. The application of the UV radiation source to spectroscopy of the A¹A₂ − X¹A₁ electronic band of formaldehyde is explored, where absolute absorption cross sections are determined for rotational transitions within the 220410 and 220430 vibronic bands. The sub-Doppler resolution has allowed refinement of the rotational constants for the slowly predissociating excited state of the 2²₀4³₀ vibronic band. The lifetimes of several rotational levels is determined to be in the range 0.74 ns to 1.46 ns. In Chapter 4 the UV radiation source developed in Chapter 3 is applied to the A ²Σ⁺ − X ²Π electronic band of the OH radical. Firstly, this source is utilised to probe a continuous supply of hydroxyl radicals using cavity-enhanced absorption spectroscopy and wavelength modulation spectroscopy. Pressure induced broadening parameters for the Q₁(2) rotational transition for He, Ne, Ar and N₂ buffer gases are also measured. Following the successful application of this source to probe a continuous OH source at atmospheric pressure, the UV spectrometer is used to probe OH radicals from nitric acid photolysis at 193 nm, where the nascent speed distribution and Doppler lineshape is shown to be in excellent agreement with the literature. Time resolved absorption spectroscopy of the nascent OH fragment also returns a translational relaxation constant of k_trans = (3.85±1.06)×10⁻¹⁰cm³molecule⁻¹s⁻¹, which is in good agreement with literature values. These preliminary results indicate the potential of this narrow-bandwidth tunable UV source as an absorption-spectroscopy-based probe of nascent Doppler profiles. Chapter 5 presents the application of frequency-modulated radiation from a near infrared diode laser as a probe of the angular momentum polarisation of the nascent CN fragments, produced by 266 nm photolysis of ICN. These CN fragments are probed in the high rotational states of both the ground and first excited vibrational level on the A ²Π − X ²Σ⁺ electronic transition; in particular these constitute the first measurements of alignment and orientation in the first excited vibrational level at this photolysis wavelength. The alignment parameters reported for both vibrational levels are comparable, indicating that the incoherent dynamics contributing to their formation are the same. In contrast, the orientation of the v = 1 CN fragment is shown to be of opposite sign to that of v = 0 at this photolysis wavelength, although the absolute differences in their orientation parameters are similar to that observed for photolysis at 248 nm. This observation is consistent with coherent orientation arising from phase differences between wavepackets propagating on multiple excited potential energy surfaces.

<p>The main focus of this thesis is the investigation of the dissociation dynamics of aryl halides using femtosecond pump-probe spectroscopy. In the monohalogenated aryl halides, iodo-, bromo- and chlorobenzene, the rate of dissociation following excitation at 266 nm in the gas phase increased with increasing mass of the halogen atom. This process was assigned to predissociation of the initially excited singlet (π, π*) state via a repulsive triplet (n, σ*) state due to spin-orbit interaction. In addition to the predissociative mechanism, a direct dissociation channel was observed in iodobenzene. The rate of the predissociation in bromobenzene was found to be faster in the condensed phase than in the gas phase, which can be explained by solvent-induced symmetry perturbations. <i>Ab initio</i> calculations of the potential energy surfaces of the ground state and several low lying excited states in bromobenzene have been performed in order to verify the suggested mechanism. Substituting one of the hydrogen atoms in bromobenzene affected the predissociation rate significantly. In o-, m- and p-dibromobenzene the predissociation rate increased with decreasing distance between the bromine atoms in accordance with an increased spin-orbit interaction introduced by the bromine substituent. The fastest predissociation rate was observed in 1,3,5-tribromobenzene. With chlorine and fluorine substitution, inductive and conjugative effects were found to be of importance. In the o- and m-isomers of the dihalogenated aryl halides, an additional faster dissociation channel was observed. Guided by <i>ab initio</i> calculations of the potential energy surfaces in the dibromobenzene isomers, we ascribed the fast dissociation pathway to predissociation of an initially excited triplet state. Upon methyl group substitution in bromobenzene, the decreased lifetime of the initially excited state was attributed to an incresaed density of coupled states.</p><p>Another system which has been studied in the condensed phase is diiodomethane. Using Car-Parrinello molecular dynamics simulations we observed a prompt dissociation and subsequent recombination to the isomer, iso-diiodomethane, in acetonitrile solution.</p><p>Vibrational wavepacket dynamics in the C (¹Σ⁺) state of NaK were studied using a direct ionization probing scheme. A simple analytical expression for the pump-probe signal was developed in order to see what factors that govern direct ionization of the vibrational wavepacket. Our experimental data was consistent with a photoionization transition dipole moment that varies with internuclear distance.</p>

The main focus of this thesis is the investigation of the dissociation dynamics of aryl halides using femtosecond pump-probe spectroscopy. In the monohalogenated aryl halides, iodo-, bromo- and chlorobenzene, the rate of dissociation following excitation at 266 nm in the gas phase increased with increasing mass of the halogen atom. This process was assigned to predissociation of the initially excited singlet (π, π*) state via a repulsive triplet (n, σ*) state due to spin-orbit interaction. In addition to the predissociative mechanism, a direct dissociation channel was observed in iodobenzene. The rate of the predissociation in bromobenzene was found to be faster in the condensed phase than in the gas phase, which can be explained by solvent-induced symmetry perturbations. Ab initio calculations of the potential energy surfaces of the ground state and several low lying excited states in bromobenzene have been performed in order to verify the suggested mechanism. Substituting one of the hydrogen atoms in bromobenzene affected the predissociation rate significantly. In o-, m- and p-dibromobenzene the predissociation rate increased with decreasing distance between the bromine atoms in accordance with an increased spin-orbit interaction introduced by the bromine substituent. The fastest predissociation rate was observed in 1,3,5-tribromobenzene. With chlorine and fluorine substitution, inductive and conjugative effects were found to be of importance. In the o- and m-isomers of the dihalogenated aryl halides, an additional faster dissociation channel was observed. Guided by ab initio calculations of the potential energy surfaces in the dibromobenzene isomers, we ascribed the fast dissociation pathway to predissociation of an initially excited triplet state. Upon methyl group substitution in bromobenzene, the decreased lifetime of the initially excited state was attributed to an incresaed density of coupled states. Another system which has been studied in the condensed phase is diiodomethane. Using Car-Parrinello molecular dynamics simulations we observed a prompt dissociation and subsequent recombination to the isomer, iso-diiodomethane, in acetonitrile solution. Vibrational wavepacket dynamics in the C (1Σ+) state of NaK were studied using a direct ionization probing scheme. A simple analytical expression for the pump-probe signal was developed in order to see what factors that govern direct ionization of the vibrational wavepacket. Our experimental data was consistent with a photoionization transition dipole moment that varies with internuclear distance.

Nous avons étudié les collisions réactives O(1D) + CH4 et O(1D) + H2O d’intérêt atmosphérique et astrophysique à l’aide de méthodes de chimie quantique et de dynamique réactionnelle. Pour la première réaction, des calculs de dynamique quantique à l’aide d’une méthode indépendante du temps ont été entrepris sur une surface d’énergie potentielle existante en considérant CH3 comme un pseudo-atome. Cette approche à dimensionnalité réduite, qualifiée ici de modèle pseudo-triatomique, a permis d’obtenir les probabilités de réaction à un moment angulaire total nul (J=0), puis de calculer les sections efficaces et les taux de réaction par une méthode approchée de type J-shifting. Nos résultats quantiques ont été comparés aux résultats obtenus par une méthode quasi-classique de trajectoires et aux prédictions expérimentales. Ces comparaisons ont, entre autre, validé le fait que la voie de sortie OH + CH3 était la voie principale pour cette réaction. La seconde réaction O(1D) + H2O a été abordée d’un point de vue structure électronique. Nous avons caractérisé les grandes lignes de la surface d’énergie potentielle de H2O2 en tenant compte de tous les degrés de liberté avec une méthode de calcul de haut niveau (MRCI : Multi Reference Configuration Interaction). Ainsi, nous avons pu déterminer avec une grande précision les géométries, les fréquences et les énergies des isomères du système H2O2 ainsi que son diagramme énergétique. A l’avenir, il faudra construire une surface d’énergie potentielle qui sera utilisée pour décrire la dynamique de cette réaction. / We have studied the reactive collisions, O (1D) + CH4 and O (1D) + H2O, of atmospheric and astrophysical interest, using different quantum chemistry methods and reaction dynamics approaches. For the first reaction, quantum dynamical calculations using a time-independent method were carried out on an existing potential energy surface by considering CH3 as a pseudo-atom. This reduced dimensionality approach, i.e. a pseudo triatomic model, yielded the calculation of the reaction probabilities at zero total angular momentum (J = 0). The cross sections and reaction rates have been computed by the approximate J-shifting method. Our quantum results were compared with results obtained by a quasi-classical trajectory method and experimental predictions. These comparisons, among others, have enabled the fact that the channel CH3 + OH was the main exit channel for this reaction. The second reaction O(1D) + H2O has been studied at the level of electronic structure. We have characterized the outline of the potential energy surface of H2O2 , taking into account all the degrees of freedom at a high level calculation (MRCI: Multi Reference Configuration Interaction). Thus, we were able to determine with great accuracy the geometries, frequencies and energies of isomers of the H2O2 system and its energy diagram. In the future, a potential energy surface has to be built to be used in the dynamical calculations for this reaction.

This thesis describes the development of several spectroscopic methods based on impulsive vibrational spectroscopy as well as of the technique itself. The first chapter describes the ultrafast time domain Raman spectrometer including the development of two noncollinear optical parametric amplifiers for sub-10 fs pulse generation with 343 or 515 nm pumping. In the first spectroscopic study we demonstrate, for the first time, that impulsive vibrational spectroscopy can be used for recording transient Raman spectra of molecules in excited electronic states. We obtain spectra of beta-carotene with comparable, or better, quality than established frequency domain based nonlinear Raman techniques. The following two chapters address the questions on the fate of vibrational coherences when generated on a reactive potential energy surface. We photoexcite bacteriorhodopsin and observe anharmonic coupling mediated vibrational coherence transfer to initially silent vibrational modes. Additionally, we are able to correlate the vibrational coherence activation with the efficiency of the isomerisation reaction in bR. Upon generation of vibrational coherence in the second excited electronic state of beta-carotene, by excitation from the ground electronic state, we are able to follow the wavepacket motion out of the Franck-Condon region. We observe vibrationally coherent internal conversion, through a conical intersection, into the first excited electronic state and are hence able to demonstrate that electronic surface crossings can occur in a vibrationally coherent fashion. Additionally, we find strong evidence for vibronic coupling mediated back and forth crossing between the two electronic states. As a combination of this work we develop a IVS based technique that allows for the direct recording of background and baseline free Raman spectra in the time domain. Several proof of principle experiments highlight the capabilities of this technique for time resolved Raman spectroscopy. In the final chapter we present work on weak-field coherent control. Here, we address the question of whether a photochemical reaction can be controlled by the phase term of an electric excitation field, in the one photon excitation limit. We study the systems rhodamine 101, bacteriorhodopsin, rhodopsin and isorhodopsin and, contrary to previous reports, find no evidence for one photon control.