Inland salt lakes of the arid and semi-arid zones of Western Australia are unique systems. An unpredictable rainfall pattern and a transient water regime ensure these lakes remain dry for much of the year. Lake Yindarlgooda in the Eastern Goldfields of Western Australia is a typical inland salt lake that has been subjected to additional stresses. This thesis is the outcome of investigations conducted on the lake from 2001 to 2003. Emphasis is on the limnology and biota of the lake, including an adjacent wetland, and impacts on the aquatic ecosystems caused predominantly by mining. Lake Yindarlgooda is a large, shallow hypersaline lake situated on the Yindarlgooda Palaeoriver. It is sodium chloride dominated and has naturally high background levels of nickel. Sites impacted by the leaching of hypersaline decant water from a leach residue storage facility (LRSF) were differentiated from control sites using multivariate statistics. Salinity was found to be a major determinant in the structure of the biological communities in the lake systems. / Different biotic communities with low taxonomic diversity were recorded in Lake Yindarlgooda and Swan Refuge, a nearby hyposaline clay pan. The benthic microbial communities were dominated by halotolerant diatoms, notably Amphora coffeaeformis, Navicula incertata and Hantzschia baltica. Variation in the diatom assemblages between the playa sites and the clay pan were noted, influenced by habitat type and salinity. Within Lake Yindarlgooda, the diatom assemblages in the control and impact sites were found to be similar. A narrow salinity spectrum dictated the taxa present. Many of the benthic diatoms collected during the dry phase were encysted, having entered dormancy. The invertebrate fauna in Lake Yindarlgooda and Swan Refuge belonged to the Crustacea. A larger percentage of hyposaline invertebrate taxa were recorded from Swan Refuge, while those in Lake Yindarlgooda were typically halotolerant species. The Ostracoda showed the greatest diversity and their abundance was higher in the southern control sites while the Anostracan, Parartemia sp., dominated the northern impact sites of the playa. / The riparian zone of Lake Yindarlgooda supported a diverse plant community, dominated by the Chenopodiaceae. The marginal vegetation communities along the shores of Lake Yindarlgooda were found to be similar, indicating habitat homeogeneity. Within the riparian zone both biological and physical soil crusts occupied large areas not inhabited by vascular plants. The biological soil crust identified was composed of an association between the filamentous cyanobacterium Microcoleus sp. and a moss species (Musci). Both biological and physical soil crusts were found to have functional roles in stabilising the surrounding low dunes. The soil crusts in the northern control sites were badly degraded as a result of trampling by livestock, while those in the southern control sites were protected and were intact. Only one Parartemia species was found to inhabit Lake Yindarlgooda, Parartemia n. sp. d. It was collected in salinities ranging from 50 to 140 g L-1. The population appeared to be oviparous, recruitment mostly from resting eggs. The male to female ratios varied between sites, as did the number of juveniles compared to the adults. The northern impact sites had a more mature Parartemia population than the southern control sites and appeared to have undergone a second recruitment. Examination of the surface sediment found a well established Parartemia “egg bank” in the northern impact sites with egg numbers much higher than in the southern control sites. / The ultrastructure of the Parartemia resting egg was identical to that of Artemia. Differences in the external features and internal structure of the resting egg of Parartemia n sp. d and Parartemia n. sp g from Lake Miranda, another saline lake, were identified. This study showed morphological variation of the egg within Parartemia, a finding not previously recorded. Rehydration trials on the Parartemia egg bank indicated that the increase in sediment salinity from the LRSF had a negative effect on the hatching of the resting eggs. In salinities above 60 mS cm-1 hatching was less successful. The conditions provided in the trials were similar to those in Lake Yindarlgooda. The hatching technique was repeated on sediment from Lake Miranda with similar results. These trials were considered a valuable monitoring tool in the assessment of impacts on the biota of temporary lakes in the absence of water. This study demonstrated that in the absence of water the egg and spore/seed bank can be used as a proxy for monitoring temporary lakes. It was also found to be valuable in understanding the distribution and diversity of the biotic communities in Lake Yindarlgooda. This study provides the first integrated reference information on a Western Australian inland salt lake against which any future impact may be assessed.

Doctor of Philosophy / The problem of water scarcity has become one of the most controversial topics in Australia over the past decades, with particular focus being the ‘sustainable’ allocation of water between extractive and environmental purposes. Geographical factors are defining the extreme variability in climate and water supply in Australia and, in the past, this was used as a rationale for the construction of large irrigation projects to deliver water to rural, urban, and industrial users. During this ‘expansionary’ phase of Australia’s water use sector, the cost of augmenting supply was relatively low and environmental considerations were secondary to the development imperative. As a result, water resources became over-allocated for extractive uses spurred on by consistent underpricing of water, which indicated a failure to reflect the true cost of water supply. As Australia’s water economy entered a ‘mature’ phase, it was no longer possible to increase supply cheaply as the most easily accessible water resources had already been captured. This was followed by widespread environmental degradation manifested in the Murray- Darling Basin, the nation’s largest river basin which hosts much of Australia’s agricultural production. Consequently, the focus shifted towards demand management, leading to a myriad of regulation aimed at increasing the allocative efficiency of scarce water resources. Towards this end, substantial government funding was injected into the various initiatives throughout the water reform process. Despite the on-going government activities in the area of water reform, the understanding of the actual economic impact and environmental outcomes of various water policies in practice remains limited. In the absence of such understanding, the effectiveness of various government water initiatives is ambiguous and inevitably compromised. The present study addresses this knowledge gap by establishing a method for evaluating the economic and environmental outcomes of environmentally-oriented polices that affect irrigated industries in a catchment. The method is based on an integrated biophysical and economic modelling approach, which enables spatial relationships to be captured accurately allowing a more realistic analysis. Information generated from a computer based biophysical simulation model form the basis of an economic optimisation model with constraints pertaining to environmental targets and water supply limits. The economic model consists of a linear programming and dynamic programming component, and involves the optimisation of resource use from a catchment manager’s perspective, seeking to achieve efficient resource use but at the same time conform to given environmental objectives. This embedded linear and dynamic programming approach was required to determine the optimal intra-seasonal and inter-seasonal water allocation, given various catchment environmental targets. The interdisciplinary approach enables the economic and ecological outcomes of the catchment management policies to be simulated and assessed at a spatially explicit scale, due to the link to Geographical Information Systems (GIS) in the biophysical model. The overall objective was to create a decision-making framework that could be used to determine the least-cost means of meeting environmental targets and resource constraints. The solutions to the analysis are directly applicable to the case study, the Mooki catchment in northern New South Wales (NSW), but with an adaptable framework that can be applied to other catchments. Specific objectives include an evaluation of the possibility of using alternative irrigation systems, as well as an evaluation of the benefits that can be realised by establishing water market, in the light of environmentally-oriented catchment policies for the case study. The economic cost of achieving environmental targets pertaining to environmental flow requirements and salinity reduction, in the form of end-of-valley salinity targets, was explicitly calculated through the economic model. While salinity targets have been set for NSW catchments, the practicality of such targets is in question, given the substantial reductions in water allocation to irrigation activities, which is one of the key contributors to deep-drainage. An additional objective in this study was therefore to investigate the value of having deep drainage targets. A further consideration is the effect of “external agents” in the form of government plans to buyback entitlements from irrigation districts, or the possibility of significant water rights purchases from mining industries. The implications of external water market entrants on the regional agricultural industry were examined.

Following concerns expressed by canegrowers in the Burdekin River Irrigation Area (BRIA) of Northern Queensland regarding rising groundwater and salinity the Department of Primary Industries instigated action to investigate and develop Best-On-Farm Water Management Practices. The purposes of this project were to improve landholder awareness of water use to maximise cane production while minimising the likelihood of salinity and changes in the groundwater balance, and to facilitate the development of soil and water management practices on a range of soils in the BRIA. The project lasted for 12 months, and this short duration affected research methodologies and techniques selected. Groups of farmers were organised, participation was good and useful outcomes resulted. These included: improved landholder awareness of the relationships between salinity, water use and groundwater; identification of a range of best practices; identification of social theories about water management practices; development of an extension model based on the value of indigenous knowledge; equality between government and farmers; examination of underlying assumptions in relation to water management by both government and farmers; identification of issues for future research and extension. / Master of Science (Hons)

This thesis is a comparative study of the life history strategies, and in particular seed germination requirements, in Australian species of the halophyte plant genus Frankenia L. (Frankeniaceae). Frankenia is a cosmopolitan genus that occurs in Mediterranean, semi-arid, and arid regions on distinctive soil types – commonly on saline, sodic or gypseous soils – in habitats such as coastal cliffs, and on the margins of salt lakes, salt-pans and saltmarshes (Summerhayes 1930; Barnsley 1982). The plants are small shrubs or cushion-bushes with pink, white or pale purple flowers, and salt-encrusted recurved leaves. This project investigates germination requirements for Frankenia in relation to seed age, light requirements, temperature preferences, salinity tolerance, and soil characteristics. It also explores two divergent reproductive strategies – notably seed packaging strategies – in relation to environmental variables. Within the 46 currently recognized endemic Australia species, some species have a few ovules per flower and produce only a few larger seeds per fruit, while other species have many ovules per flower and produce many small seeds per fruit. Large-seededness is thought to increase the probability of successful seedling establishment in drought and salt-stressed environments. As both larger- and smaller-seeded species of Frankenia co-occur in close geographical proximity, hypotheses regarding the advantages of large-seededness in stress environments can be tested. By restricting the analysis of seed mass variation to similar habitats and within a single plant genus, it is possible to test ecological correlates that would otherwise be masked by the strong effects of habitat differences and phylogenetic constraints. Overall, larger-seeded Frankenia species were demonstrated to be advantageous for rapid germination after transitory water availability, and for providing resources to seedlings if resources became limiting before their successful establishment. Smaller-seeded species delayed germination until both soil-water availability and cooler temperatures persisted over a longer time period, improving chances of successful establishment for the more slowly growing seedlings that are more reliant on their surroundings for resources. This study produces information on the seed and seedling biology of many Australian species of Frankenia including several that are of conservation significance, e.g. F. crispa with its isolated populations, and the rare and endangered F. plicata. This information is important for the development of conservation management plans for these and other arid zone, halophyte species. In addition, the results of this study are of practical significance in determining the suitability of Frankenia for inclusion in salinity remediation and mine-site rehabilitation projects, and for promoting Frankenia as a drought and salt tolerant garden plant.

Estuarine ecosystems are under enormous stress due to rapid coastal developments and climate change. Proper management of these important ecosystems requires a good understanding of their key processes. In this thesis, riparian groundwater-surface water interaction is explored for an aquifer-estuary system primarily by a series of numerical experiments. The work focuses on riparian-scale groundwater flow and salinization. The overall aim of the study was to extend our understanding of aquifer-estuary exchange, which is currently centered on the lower marine estuarine reach, to middle estuaries (i.e., the estuary reach that has variable salinity). The numerical experiments were guided by previous studies and observations made from an exploratory field investigation conducted in and next to Sandy Creek, a macro-tidal estuary incised in the alluvial aquifer of the Pioneer Valley, North-eastern Australia (Longitude 49.11°, Latitude -21.27°). The following observations were made from the field investigation: Sandy Creek estuary experiences a variable salinity regime in its mid reaches that consists of periods of 1) freshwater flushing due to up catchment-derived flooding, 2) persistent freshwater conditions for at least 2 months following the flooding, 3) tidal salinity fluctuations and 4) constant near-seawater salinity; laterally extensive and disconnected aquitards were found to occur at the field site; Sandy Creek had an essentially ‘vertical’ bank slope. Numerical simulations were conducted using the finite element modeling code FEFLOW for saturated unsaturated, variable-density groundwater flow and solute transport, to examine the influence of the following factors on aquifer-estuary exchange: a tidally varying estuarine salinity and hydraulic head, a seasonal freshwater flush (i.e., estuary with freshwater and an elevated stage due to an up catchment sourced flood), near estuary aquitard layers, lateral asymmetry (about the estuary centerline) in hydraulic conductivity and regional hydraulic gradients. The simulations neglected seepage face development after numerical experiments showed that for a vertical bank estuary interacting with a sandy loam aquifer, seepage face effects on groundwater flow and associated salinity distribution were minimal. The following observations were drawn from the range of numerical experiments considered. Tidal salinity fluctuations in the estuary (varying between 0 and 1 - i.e., using a relative salinity scale where a salinity of 1 is seawater) produced flow paths and residence times that were distinctly different to the constant seawater salinity case. While the constant average 0.5 salinity case and the corresponding tidally-varying salinity case (i.e., salinity varying between 0 and 1) produced somewhat comparable results in terms of RUC and RLC (RUC represents groundwater discharge to the estuary that originated from recharge to the estuary bank and RLC groundwater discharge to the estuary that originated from recharge through the estuary bed), whereas flow paths and the total salt mass in the aquifer differed. Freshwater flushing simulations indicated that the near-estuary aquifer responds rapidly to a 2-day ‘wet season’ flushing event with a short-lived freshwater lens created through freshening of the hyporheic zone. Annual cycling of the seasonal flushing led to significant disruption of the estuary water circulation in the aquifer thereby impacting on residence times, transport pathways, and RUC and RLC, and acting to potentially remobilize groundwater and contaminants previously trapped in continuous and semi-continuous re-circulation cells. Although groundwater flow paths determined using tide-averaged velocity vectors were representative of flow paths from transient tidally driven flow vector field, residence times calculated from the two flow fields were markedly different. The influence of riparian scale aquitards and lateral asymmetry (about the estuary centreline) in hydraulic gradients and hydraulic conductivity on groundwater flow and associated salinity distribution was also found to be sensitive to estuarine salinity conditions. The results indicate that observations made about aquifer-estuary interaction in the lower estuary may not be directly applicable to the middle estuary. According to the simulations, tidal salinity variations in the estuary are important factors that affect hyporheic-riparian salt transport processes and that the use of a time averaged estuarine salinity as an approximation to variable salinity conditions is unsuitable for the accurate prediction of the near-estuary dynamics in middle estuaries. This study was based on a two dimensional representation of the riparian scale interaction and it is clear that future research needs to focus on the three-dimensionality of the aquifer-estuary system, incorporating spatially and temporally varying flow and transport characteristics. That is, many estuaries are tortuous and the aquifer geology spatially complex such that assumptions required for the two-dimensional section will most likely restrict application to the field. The tidal dynamics in the middle estuary is also expected to generate three dimensional aspects to the aquifer-estuary interaction. Thus further investigation that explicitly models the hydrodynamics and salt transport in the estuary and estuarine morphology is required to refine the insight provided by the simple conceptual model adopted in this study.

<p>Metal contaminated stormwater, i.e. surface runoff in urban areas, can be treated in percolation systems, ponds, or wetlands to prevent the release of metals into receiving waters. Plants in such systems can, for example, attenuate water flow, bind sediment, and directly accumulate metals. By these actions plants affect metal mobility. This study aimed to examine the accumulation of Zn, Cu, Cd, and Pb in roots and shoots of plant species common in stormwater areas. Furthermore, submersed plants were used to examine the fate of metals: uptake, translocation, and leakage. Factors known to influence metal accumulation, such as metal ion competition, water salinity, and temperature, were also examined. The following plant species were collected in the field: terrestrial plants – <i>Impatiens parviflora</i>, <i>Filipendula ulmaria</i>, and <i>Urtica dioica</i>; emergent plants –<i> Alisma-plantago aquatica</i>, <i>Juncus effusus</i>, <i>Lythrum salicaria</i>, <i>Sagittaria sagittifolia</i>, and <i>Phalaris arundinacea</i>; free-floating plants – <i>Lemna gibba</i> and <i>Lemna minor</i>; and submersed plants – <i>Elodea canadensis</i> and <i>Potamogeton natans</i>. Furthermore, the two submersed plants, <i>E. canadensis</i> and <i>P. natans</i>, were used in climate chamber experiments to study the fate of the metals in the plant–water system.</p><p>Emergent and terrestrial plant species accumulated high concentrations of metals in their roots under natural conditions but much less so in their shoots, and the accumulation increased further with increased external concentration. The submersed and free-floating species accumulated high levels of metals in both their roots and shoots. Metals accumulated in the shoots of <i>E. canadensis</i> and <i>P. natans</i> derived mostly from direct metal uptake from the water column.</p><p>The accumulation of Zn, Cu, Cd, and Pb in submersed species was in general high, the highest concentrations being measured in the roots, followed by the leaves and stems, <i>E. canadensis</i> having higher accumulation capacity than <i>P. natans</i>. In <i>E. canadensis</i> the Cd uptake was passive, and the accumulation in dead plants exceeded the of living with time. The capacity to quickly accumulate Cd in the apoplast decreased with successive treatments. Some of the Cd accumulated was readily available for leakage. In <i>P. natans,</i> the presence of mixtures of metal ions, common in stormwater, did not alter the accumulation of the individual metals compared to when presented separately. It is therefore, proposed that the site of uptake is specific for each metal ion. In addition cell wall-bound fraction increased with increasing external concentration. Further, decreasing the temperature from 20ºC to 5ºC and increasing the salinity from 0‰ to 5‰ S reduced Zn and Cd uptake by a factor of two.</p><p>In <i>P. natans</i> the metals were not translocated within the plant, while in<i> E. canadensis </i>Cd moved between roots and shoots. Thus,<i> E. canadensis</i> as opposed to <i>P. natans</i> may increase the dispersion of metals from sediment via acropetal translocation. The low basipetal translocation implies that neither <i>E. canadensis</i> nor <i>P. natans</i> will directly mediate the immobilisation of metal to the sediment via translocation.</p><p>To conclude, emergent and terrestrial plant species seem to enhance metal stabilization in the soil/sediment. The submersed plants, when present, slightly increase the retention of metals via shoot accumulation.</p>

Graduation date: 1997

The purpose of my research was to test the hypothesis that the availability of fresh, naturally occurring water may limit the distribution of Florida Key Deer (Odocoileus virginianus clavium). More specifically, I was trying to determine if there was enough fresh, drinkable water for the deer on each of the islands. To test the hypothesis, I developed a model that simulated likely seasonal fluctuations in fresh water availability in naturally occurring waterholes within the Key Deer range. I estimated 60 scenarios representing different weather (precipitation and evaporation) conditions, different literature estimates of the daily water requirement of Key Deer and also different upper salinity thresholds for drinkable water. Results showed that 1) even under the most favorable conditions in terms of fresh water availability, there was not enough fresh, drinkable water for the deer on any of the islands. Results also showed that 2) high salinity was important in determining the fresh water availability to the deer, in addition to the lack of water volume. Although these results suggest a prolonged seasonal shortage of fresh, naturally occurring water on each of the islands, deer were present on all of the islands during all seasons. One possible reason for the lack of correlation between Key Deer distribution and naturally occurring waterholes is the availability of man-made water sources (e.g. birdbaths, swimming pools).

Metal contaminated stormwater, i.e. surface runoff in urban areas, can be treated in percolation systems, ponds, or wetlands to prevent the release of metals into receiving waters. Plants in such systems can, for example, attenuate water flow, bind sediment, and directly accumulate metals. By these actions plants affect metal mobility. This study aimed to examine the accumulation of Zn, Cu, Cd, and Pb in roots and shoots of plant species common in stormwater areas. Furthermore, submersed plants were used to examine the fate of metals: uptake, translocation, and leakage. Factors known to influence metal accumulation, such as metal ion competition, water salinity, and temperature, were also examined. The following plant species were collected in the field: terrestrial plants – Impatiens parviflora, Filipendula ulmaria, and Urtica dioica; emergent plants – Alisma-plantago aquatica, Juncus effusus, Lythrum salicaria, Sagittaria sagittifolia, and Phalaris arundinacea; free-floating plants – Lemna gibba and Lemna minor; and submersed plants – Elodea canadensis and Potamogeton natans. Furthermore, the two submersed plants, E. canadensis and P. natans, were used in climate chamber experiments to study the fate of the metals in the plant–water system. Emergent and terrestrial plant species accumulated high concentrations of metals in their roots under natural conditions but much less so in their shoots, and the accumulation increased further with increased external concentration. The submersed and free-floating species accumulated high levels of metals in both their roots and shoots. Metals accumulated in the shoots of E. canadensis and P. natans derived mostly from direct metal uptake from the water column. The accumulation of Zn, Cu, Cd, and Pb in submersed species was in general high, the highest concentrations being measured in the roots, followed by the leaves and stems, E. canadensis having higher accumulation capacity than P. natans. In E. canadensis the Cd uptake was passive, and the accumulation in dead plants exceeded the of living with time. The capacity to quickly accumulate Cd in the apoplast decreased with successive treatments. Some of the Cd accumulated was readily available for leakage. In P. natans, the presence of mixtures of metal ions, common in stormwater, did not alter the accumulation of the individual metals compared to when presented separately. It is therefore, proposed that the site of uptake is specific for each metal ion. In addition cell wall-bound fraction increased with increasing external concentration. Further, decreasing the temperature from 20ºC to 5ºC and increasing the salinity from 0‰ to 5‰ S reduced Zn and Cd uptake by a factor of two. In P. natans the metals were not translocated within the plant, while in E. canadensis Cd moved between roots and shoots. Thus, E. canadensis as opposed to P. natans may increase the dispersion of metals from sediment via acropetal translocation. The low basipetal translocation implies that neither E. canadensis nor P. natans will directly mediate the immobilisation of metal to the sediment via translocation. To conclude, emergent and terrestrial plant species seem to enhance metal stabilization in the soil/sediment. The submersed plants, when present, slightly increase the retention of metals via shoot accumulation.

<p>This research investigated the nature, source and the spatial variation of the salinity of the water used for irrigation in the urban farming area of Philippi, which lies in the Cape Flats region of the Cape Town Metropolitan Area, South Africa. The irrigation water is mainly drawn from the Cape Flats aquifer, and pumped into ponds for eventual crop irrigation. Water samples were collected in summer and in winter from fifteen selected sites using standard water sampling procedures. Each site consisted of one borehole and one pond. The samples were routinely analyzed for salinity levels, and concentrations of major and minor ions. From the same boreholes and ponds, water was sampled in summer for isotope analysis to assess effects of evaporation on the water quality and salinity. Descriptive statistics were used to display the variation in range of specific ions in order to compare them with the recommended ranges. Geographical Information Systems analysis described the spatial distribution of the salinity across the study area, and hydrogeochemical analysis characterized the various waters and detected similarities between the water samples in the study area and other waters found in the Cape Flats region. In addition, the US salinity diagram classification of irrigation water developed by Richards (1954) was used to assess the current suitability of groundwater and pond water samples collected during the entire sampling period for irrigation activities. The research indicated that the concentrations of some ions such as chloride, nitrate, potassium and sodium exceeded in places in the study area, the target range values set by the Department of Water Affairs and Forestry (DWAF, 1996) and the Food and Agriculture Organization (Ayers and Westcot, 1985). It revealed that borehole and pond water were mostly brackish across the area regarding their total dissolved salts content, and fresh water was only found in the middle part of the study area. The research found that sea water does not intrude into the aquifer of the study area, and the accumulation of salts in groundwater and soil in the study area is mainly due to the agricultural activities and partially due to the natural movement of water through the geological formation of the Cape Flats region. The conceptual model of the occurrence of the salinization process supported these findings. From this investigation it is understood that the groundwater and pond water in the study area were generally suitable for irrigation purposes but they have to be used with caution as the vegetables are classified as sensitive and moderately sensitive to salt according to DWAF Irrigation water guidelines (1996). The quality of these waters was mainly affected by the land use activities.</p>