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Digitized by Kansas Correctional Industries

The decomposition of chloroform at 510˚C was investigated in a continuous flow system, using nitrogen as the carrier gas. The main products of the reaction were hydrogen chloride, tetrachloroethylene, pentachloroethane and hexachloroethane; hydrogen and chlorine could not be detected. Neither the addition of a radical initiator (azobisisobutyroni trile) nor an inhibitor (phenol) affected the breakdown, and so we have rejected the idea that the main reaction mechanism is of a radical nature. From the results obtained by varying the surface to volume ratio of the reactor, the reaction appeared to be catalysed by the surface of the reactor, but pretreating the tube by steaming, soaking in water or EDTA solution did not affect the pyrolysis. The reaction appeared to be virtually unaltered when a tube made from very pure silica was used. Kinetic investigations showed that the reaction was first order with respect to chloroform, and exhibited an induction period. Carrying out the reaction in a carbonised tube resulted in a faster reaction, and an increase in the induction period. To account for the results obtained, a mechanism is suggested which involves the formation of a carbon polymer on the silica reactor. Chloroform could then be adsorbed onto the polymer where reaction could occur. In a carbonised tube a graphite-like carbon structure may begin to take over as the catalyst. The alkaline hydrolysis of chloroform was studied in aqueous 1,4-dioxane (32 % w/v), at 360C. The rate of disappearance of chloroform was followed by gas-liquid chromatography, whilst the sodium hydroxide concentration was determined by titration with dilute hydrochloric acid. The reaction was second order overall, first order with respect to each of the reactants. Data obtained at 25˚C, 31˚C, 36˚C and 41˚C was used to determine the activation parameters. Increasing the concentration of dioxane in the solvent decreased the reaction rate. The reaction showed a definite negative salt effect, sodium chloride exhibiting a greater effect than potassium nitrate. The reaction between deuterochloroform and sodium deuteroxide in deuterium oxide/dioxane was faster than the reaction in the corresponding proton system. Application of the Yagil approach suggested that the transition state is associated with seven water molecules. This led us to suggest an alternative mechanism for the reaction, involving nucleophilic attack by water on the trichloromethyl anion, formed by loss of a proton from chloroform. In order to apply the Yagil criterion the hydration number of diolane had to be determined; a value of 2.25 was obtained.

Aerobic granular sludge (AGS) technology is a next-generation technology for the biological treatment of wastewater. The advantages of AGS in terms of small footprint, low operation and capital cost and high effluent quality makes it a strong candidate for replacing conventional biological wastewater treatment based on activated sludge (CAS) process, and potentially become the standard for biological wastewater treatment in the future. Saline wastewater is generated from many industrial processes as well as from the use of sea water as a secondary quality water for non-potable use such as toilet flushing to mitigate shortage of fresh water in some coastal cities. Salt is known to inhibit biological wastewater treatment processes in terms of organic and nutrient removal. In the first part of my dissertation, I conducted three lab-scale experiments to 1) evaluate the effect of salt on granulation and nutrient removal in AGS (330 days); 2) develop engineering strategies to mitigate the adverse effect of salt on nutrient removal of AGS (164 days); and 3) compare the effect of salt on the stoichiometry and kinetics of different phosphate accumulating organisms (PAO) clades (PAOI and PAOII) and to determine the effect of potassium and sodium ions on the activities of different PAO clades (225 days). Like other artificial microbial ecosystems (e.g. CAS plant and anaerobic digester), a firm understanding of the microbial ecology of AGS system is essential for process design and optimization. The second part of my dissertation reported the first microbial ecology study of a full-scale AGS plant with the aim of addressing the role of regional (i.e. immigration) versus local factors in shaping the microbial community assembly of different-sized microbial aggregates in AGS. The microbial communities in a full-scale AGS plant in Garmerwolde, The Netherlands, was characterized periodically over 180 days using Illumina sequencing of 16S ribosomal RNA amplicons of the V3-V4 regions. Overall, the discovery of this PhD study sheds light on the application of AGS for the treatment of saline wastewater and deepens our understanding on the microbial ecology of AGS systems, which is essential for process design and optimization.

<div> The folding and unfolding processes of poly-protein has been tremendously studied recently. The poly-protein dynamics under an external force can play an important role in addressing the issue of the mechanics of muscle tissue. In this research, we use a single-molecule technique: magnetic tweezers to observe the dynamics of 8-mer poly-protein L under different loads applied and then in different Tris-buffered salines. Our result shows that more protein domains unfold as the force load becomes larger. At 6, 7 and 8 pN loads, the poly-protein is most likely to stay in state 1, 3 and 6 with 1, 3 and 6 domains unfolded, respectively according to the probability distribution. This can be well explained by our constructed free energy-related model. The fit results give protein L parameters of persistence length of 0.4 nm, contour length of 18.8 nm and the unfolding energy of 6.5 kT, all in reasonable ranges based on previously reported literature.</div><div> Besides, we also find the dependency of transition rate on force load and salt. The poly-protein has lower transition rate at high force than at low force due to the free energy tilting effect since high force extremely decreases the possibility of protein unfolding that results in a huge drop in the total number of folding and unfolding events. This inverse proportion effect can also be seen in different TRIS-buffered salines (TRIS-150mM NaCl, TRIS-1M NaCl, and TRIS-1M KCl,). We explore the effect of salt concentration, when the concentration of NaCl is increased, the transition rate increases while the probability distribution remains almost the same, indicating the protein unfolding barrier is lowered without altering the overall energy landscape. We attribute this to, first, the charge shielding effect that more interactions between ions and water molecules occur, causing fewer water molecules available to interact with the charged part of protein than before, and, second, more direct interactions of ions with protein that might affect the electrostatic-related transition rate. Considering the effect of salt type, the two 1M alkali metal-chloride salines are compared. We conclude that ions with larger size have less effect on transition rate because ions with smaller size (Na+) can create stronger bonds with water that increase the interference on the protein interaction with water and can easier penetrate into protein to directly interact with the protein.</div>

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The distinct structure and dynamics of interfacial water are due to a break in the extended hydrogen bonding network present in bulk water. At solid-aqueous interfaces, the presence of surface charge, which induces a static electric field, and the electrolytes, which are present in most naturally relevant systems, can additionally perturb the hydrogen bonding environment due to polarization. The interplay between the surface-charge-induced electric field and the ions in changing the structure of interfacial water has important consequences in the chemistry of processes ranging from protein-water interactions to mineral-water reactivity in oil recovery. Accessing information about the first few layers of water at buried interfaces is challenging. Vibrational sum-frequency generation (vSFG) spectroscopy is a powerful technique to study exclusively the interfacial region and is used here to investigate the role of interfacial solvent structure on surface reactivity. It is known that the rate of quartz dissolution increases on addition of salt at neat water pH. The reason for this enhancement was hypothesized to be a consequence of perturbations in interfacial water structure. The vSFG spectra, which is a measure of ordering in the interfacial water structure, shows an enhanced effect of salt (NaCl) at neat pH 6~8. The trend in the effect of salt on vSFG spectra versus the bulk pH is remarkably consistent with the enhancement of rate of quartz dissolution, providing the first experimental correlation between interfacial water structure and silica dissolution. If salt alters the structure of interfacial water, it must affect the vibrational energy transfer pathways of water, which is extremely fast in bulk water (~130 fs). Thus far, the role of ions on the vibrational dynamics of water at charged surfaces has been limited to the screening effects and reduction in the depth of the region that contributes to vSFG. Here, we measure the ultrafast vibrational relaxation of the O-H stretch of water at silica at different bulk pH, using time-resolved (TR-vSFG). The fast vibrational dynamics of water (~200 fs) observed at charged silica surfaces (pH 6 and pH 12), slows down (~600 fs) on addition of NaCl only at pH 6 and not at pH 12. On the other hand at pH 2 (neutral surface), the vibrational relaxation shows an acceleration at high ionic strengths (0.5 M NaCl). The TR-vSFG results suggest that there is a surface-charge dependence on the sensitivity of the interfacial dynamics to ions and that reduction in the probe depth of vSFG alone cannot explain the changes in the vibrational lifetime of interfacial O-H. This is further supported by the cation specific effects observed in the TR-vSFG of the silica/water interface. While the vibrational relaxation of O-H stretch slows on addition of all salts (LiCl, NaCl, RbCl, and CsCl), the degree of slowing down is sensitive to the cation identity. The vibrational lifetime of O-H stretch in the presence of different cations follows the order: Li+ &lt; Na+ &lt; Rb+, consistent with previous Hofmeister effect reported in vSFG spectroscopy as well as AFM measurements at silica/water interface. To provide molecular insight on the effect of surface charge density and ionic strength on the changes in interfacial water structure, Molecular Dynamics (MD) simulations were performed on water at different types of surfaces. It was shown that the properties of water near the interface, e.g., a net orientation and the depth to which this persists, depend on the degree of specific adsorption of the counter ions. Our vSFG results, along with the insights from MD simulations, highlight the importance of considering the role of ions on the solvent structure within the electric double layer region, beyond the screening effects predicted by classical electrochemical models. / Chemistry

L’objectif de ce travail de thèse est de développer une nouvelle voie d’accès aux hétérobiaryles à chiralité axiale selon une stratégie de synthèse atropoénantiosélective réalisée en l’absence de métaux de transition. Le projet combine une méthode de construction de la liaison Csp2-Csp2 appelée couplage Aryne, et une approche énantiosélective, le concept ICE (ionic chiral environment). Ce concept repose sur la mise en œuvre de ligands chiraux en tant que stabilisants du métal (Li) à partir d’un partenaire de couplage organolithié. L’environnement chiral résultant des agrégats chiraux générés doit permettre d’induire la chiralité lors de l’étape de couplage. La première partie de ce travail a consisté à développer une version hétérocyclique du couplage Aryne en conditions achirales. Les résultats obtenus à l’issue de cette étude ont permis de relier la nature électronique du partenaire hétérocyclique à sa réactivité dans le couplage. Le thiophène en particulier a fourni de très bons résultats ce qui nous a permis de développer davantage la méthode. La seconde partie de ce travail a eu pour objectif de développer le couplage étudié dans des conditions de solvants adaptées à la formation des agrégats mixtes chiraux envisagés. Cette étude a permis de mettre en évidence l’influence remarquable d’une gamme de plusieurs ligands (polyéthers, polyamines, aminoalcoolates,…) et sels (Li, Zn, K,…) sur le couplage développé en solvant apolaire. Par la suite, les conditions de couplages optimales ont été étendues à différents hétérocycles avec succès. En parallèle, des calculs théoriques de la densité fonctionnelle ont permis d’appuyer plusieurs de nos résultats ; ces calculs ont également fourni une analyse détaillée du mécanisme du couplage Aryne. Enfin, la dernière partie de ce manuscrit a concerné le couplage d’un partenaire hétérocyclique encombré des dérivés du thiophène et du benzothiophène / The aim of this thesis work was to provide novel access to axially chiral heterobiaryls following a transition metal free atropoenantioselective synthetic route. This project combines the Csp2-Csp2 Aryne coupling methodology, and an enantioselective approach, the ICE concept (ionic chiral environment). This concept relies on the implementation of chiral ligands as metal (Li) stabilizers with organolithium coupling partners. The chiral environment resulting from the chiral aggregates obtained must induce chirality during the coupling step. The first part of this work aimed to develop an heterocyclic version of the Aryne route in achiral conditions. The results of this study revealed a clear correlation between the electronic nature of the heterocyclic partner and its reactivity in the Aryne coupling. Thiophene, especially, proved to furnish promising results and allowed us to further develop the method. Second part of this work aimed to develop the reaction in the appropriate solvent conditions so that chiral mixed metal aggregates could be envisioned. This study outlined the remarkable effect of external chelating ligands (polyethers, polyamines, aminoalkoxides,…) and salt additives (Li, Zn, K,…) on the aryne coupling reaction in apolar media. The best reaction conditions emerging from this work were then successfully applied to others heterocyclic coupling partners. In parallel, theoretical calculations using density functional theory showed good agreement with experimental work and allowed us to propose mechanistic scheme for the reaction. Last part of this work focused on the reaction of hindered heterocyclic coupling partners with thiophene and benzothiophene derivatives

The use of polymers as flocculating additives is a common practice in many manufacturing environments. However, exactly how these polymers interact with surfaces is relatively unknown. One specific topic which is thought to be very important to flocculation is an adsorbed polymer's conformation. Substantial amounts of previous work, mainly using simulations, have been performed to elucidate the theory surrounding adsorbed polymer conformations. Yet, there is little experimental work which directly verifies current theory. In order to optimize the use of polymer flocculants in industrial applications, a better understanding of an adsorbed polymer's conformation on a surface beyond theoretical simulations is necessary. This work looks specifically at site blocking, which has a broad impact on flocculation, adsorption, and surface modification, and investigated its effects on the resulting adsorbed polymer conformation. Experimental methods which would allow direct determination of adsorbed polymer conformational details and be comparable with previous experimental results were first determined or developed. Characterization of an adsorbed polymer's conformation was then evaluated using dynamic light scattering, a currently accepted experimental technique to examine this. This commonly used technique was performed to allow the comparison of this works results with past literature. Next, a new technique using atomic force microscopy was developed, building on previous experimental techniques, to allow the direct determination of an adsorbed polymer's loop lengths. This method also was able to quantify changes in the length of adsorbed polymer tails. Finally, mesoscopic simulation was attempted using dissipative particle dynamics. In order to determine more information about an adsorbed polymer's conformation, three different environmental factors were analyzed: an adsorbed polymer on a surface in water, an adsorbed polymer on a surface in aqueous solutions of varying ionic strength, and an adsorbed polymer on a surface functionalized with site blocking additives. This work investigated these scenarios using a low charge density high molecular weight cationic polyacrylamide. Three different substrates, for polymer adsorption were analyzed: mica, anionic latex, and glass. It was determined that, similar to previous studies, the adsorbed polymer layer thickness in water is relatively small even for high molecular weight polymers, on the order of tens of nanometers. The loop length distribution of a single polymer, experimentally verified for the first time, revealed a broad span of loop lengths as high as 1.5 microns. However, the bulk of the distribution was found between 40 and 260 nanometers. For the first time, previous theoretical predictions regarding the salt effect on adsorbed polymer conformation were confirmed experimentally. It was determined that the adsorbed polymer layer thickness expanded with increasing ionic strength of the solvent. Using atomic force microscopy, it was determined that the adsorbed polymer loop lengths and tail lengths increased with increasing ionic strength, supporting the results found using dynamic light scattering. The effect of the addition of site blocking additives on a single polymer's conformation was investigated for the first time. It was determined that the addition of site blocking additives caused strikingly similar results as the addition of salt to the medium. The changes in an adsorbed polymer's loop lengths was found to be inconsistent and minimal. However, the changes in an adsorbed polymer's free tail length was found to increase with increasing site blocking additive levels. These results were obtained using either PDADMAC or cationic nanosilica as site blocking additives.