Thesis (Ph. D.)--University of Washington, 1996. / Vita. Includes bibliographical references (leaves [133]-142).

Thesis (M.S.)--State University of New York at Binghamton, Department of Geological Sciences and Environmental Studies, 2008. / Includes bibliographical references.

Thesis (Ph.D.)--University of North Carolina at Wilmington, 2006. / Includes bibliographical references (leaves: 198-208)

Thesis (Ph. D.)--University of Washington, 2006. / Vita. Includes bibliographical references (leaves 100-112).

No description available.

Thesis (MSc)--Stellenbosch University, 2004. / ENGLISH ABSTRACT: Much has been written about the effects of soil salinity on plant growth. Its devastating effects have already been reported 2000 years BC. In the 21· century an alarming 80 million hectares of cultivated land area are affected by salt (Munns, 2002a) and represent a growing threat to agriculture. Salt tolerance is a complex trait moderately expressed in only a few plant genotypes (Ruiz, 2001). An attempt to transfer salt tolerance genes from the wild grass, Thinopyrum distichum, to triticale and éommon wheat was initiated by Marais and Marais (2003). A study of Th. distichum x rye hybrids enabled the authors to identify chromosomes 2Jld , 3Jld , 4Jld and SJld as being involved in the determination of salt tolerance. Indirect (yet unconfirmed) evidence suggested that 7Jld might also have a role. A programme aiming to transfer regions of the critical chromosomes to homoeologous triticale chromosomes, which relies heavily on the use of molecular markers, was launched. While an RFLP marker is available for each of the Thinopyrum chromosomes, these are not suited for the screening of large numbers of segregates. This study therefore represents an attempt to convert the RFLP markers into less time consuming and cost-effective SCAR markers. The published DNA sequences of the RFLP probes in question were used as templates to design PCR primers. The PCR reactions were optimised using DNA of Th. distichum, rye and their FI hybrid. When Thinopyrum specific amplification products were obtained, the primers were also tested on a panel of genotypes with and without the target chromosomes. Seemingly polymorphic bands were confirmed by Southern blotting and hybridisation with the corresponding RFLP probes. The primers were also tested on a panel of genotypes that included 'Rex' triticale to ensure that they would also detect a difference in a triticale genetic background during transfer. Polymorphic bands were then isolated and sequenced to further refine the markers. In certain eases, sequences of the same fragment amplified in triticale ('Rex') and Thinopyrum were aligned in an attempt to design more specific markers. Using this approach, it was possible to develop chromosome specific SCARs for Thinopyrum chromosomes 3Jld and 7J2 d . Three and one set(s) of PCR markers, respectively, have been developed and can be used to unequivocally detect the Thinopyrum chromosomes involved in salt tolerance against a triticale background. A SCAR marker was also found for chromosome 6J. Thus, an attempt was made to convert thirteen RFLP probes to SCAR markers. Only three were successfully converted. The main reason for the low success rate is the syntenic relationships between the genomes of the different cereals that made it an arduous- task to find discriminating primer sets. Based on the results obtained, an adapted procedure is suggested for future attempts to develop chromosome specific markers utilizing published sequence information that was obtained for a different species. / AFRIKAANSE OPSOMMING: Baie is al geskryf oor die uitwerking van grond versouting op plantproduksie. Die vernietigende gevolge van versouting is alreeds 2000 jaar VC gerapporteer. In die 21* eeu is 'n geraamde 80 miljoen hektaar (Munns, 2002a) bewerkte land-area sout-geaffekteerd. Die ontstellende verwikkelinge verteenwoordig 'n groeiende bedreiging vir die landbou. Soutverdraagsaamheid is 'n komplekse kenmerk en slegs enkele plantgenotipes met matige verdraagsaamheid kon nog ontwikkel word (Ruiz, 2001). 'n Poging om soutverdraagsaamheidsgene vanaf die wilde gras, Thinopyrum distichum, na triticale en gewone koring oor te dra, is deur Marais en Marais (2003) geïnisieer. 'n Studie van Th. distichum x rog hibriede het die skrywers in staat gestelom chromosome (2Jld, 3Jld, 4Jld en SJld) wat bydra to soutverdraagsaamheid te identifiseer. Indirekte (maar onbevestigde) aanduidings is gevind dat 7J1dook' n rol mag speel. 'n Program is daarna geloods om segmente van chromosome na homoeoloë triticale chromosome oor te dra, 'n onderneming wat swaar steun op die gebruik van molekulêre merkers. Alhoewel daar'n RFLP merker beskikbaar is vir elk van die Thinopyrum chromosome, is hierdie merkers nie geskik vir die sifting van groot getalle segregate nie. Hierdie studie verteenwoordig 'n poging om die RFLP merkers om te skakel na 'n minder tydrowende en meer koste-effektiewe SCAR merkers. Die gepubliseerde DNS-volgordes van die betrokke RFLP peilers is as templaat gebruik om PKR inleiers te ontwerp. Die PKR reaksies is geoptimiseer deur gebruik te maak van DNS van Th. distichum. rog en hulle FI hibried. In gevalle waar Thinopyrum spesifieke amplifikasie produkte verkry is, is die inleiers ook getoets op 'n paneel van genotipes met en sonder die teikenchromosoom. Skynbare polimorfiese bande is bevestig deur 'n 'Southern' klad te maak en te hibridiseer met die tersaaklike RFLP peiler. Die inleiers is ook getoets op 'n paneel van genotipes waarby 'Rex' triticale ingesluit was om te verseker dat dit ook verskille in 'n triticale genetiese agtergrond opspoor (nodig tydens oordrag). Polimorfiese bande is verder verfyn. Dit is geïsoleer en die DNS-volgorde daarvan is bepaal. Tn sekere gevalle is ooreenstemmende fragmente geamplifiseer in triticale ('Rex') en Thinopyrum. Die volgordes is dan bepaal en met mekaar vergelyk in 'n poging om meer spesifieke merkers te ontwerp. Met die gebruik van hierdie benadering was dit moontlik om chromosoom-spesifieke SCAR-merkers vir die Thinopyrum chromosome 3Jld en 7J2d te ontwikkel. Drie en een stel(le) PKR merkers is onderskeidelik ontwikkel en kan gebruik word om ondubbelsinnig te bepaal of die betrokke Thinopyrum chromosoom segregeer in 'n triticale kruising. 'n SCAR merker is ook gevind vir chromosoom 6J. Dus, daar is probeer om dertien RFLP peilers na SCAR merkers om te skakel. Slegs drie van die pogings was suksesvol. Die hoofrede vir die lae sukseskoers is die hoë graad van sintenie tussen die genome van die verskillende grane wat dit 'n moeilike taak gemaak het om diskriminerende inleierstelle te ontwerp. Op grond van die resultate word 'n ietwat gewysigde prosedure vir die toekomstige pogings om chromosoom-spesifieke merkers te ontwerp met gebruik van gepubliseerde volgorde inligting vanaf' n ander spesie, voorgestel.

Tidal exchanges of organic carbon, nitrogen and phosphorus between a south temperate Sarcocornia marsh and its associated estuary are examined. Subterranean water flow was small, and the hydraulic exchange between the two systems largely surficial. The dominant tidal signal was semi-diurnal, and the extent of inundation of the marsh varied considerably as a consequence of interactions of semi-lunar tidal cycles with changes in daily mean sea level. Annual net fluxes of organic carbon were directed from the marsh to the estuary, but amounted to less than 2% of marsh aerial net primary productivity. This indicates the incompatibility of E.P. Odum's outwelling hypothesis to this marsh-estuarine system. The direction of net flux of organic carbon switched on a time-scale of days. These directions were largely correlated with mesoscale oceanic events, which materially altered the extent of marsh inundation, and which provided evidence of the mutual exclusivity of outwelling of DOC from the marsh and oceanic upwelling. Laboratory mesocosm experiments using intact marsh blocks of sediment from the marsh were conducted to identify the proximate processes and interactions at the marsh-water interface responsible for the variability of marsh-estuarine exchanges. Patterns of fluxes of organic carbon, total nitrogen and phosphorus were markedly different in the structurally contrasted tidal creek and Sarcocornia Zone regions of the marsh. Both regions exported these components, but the fluxes of organic carbon and total phosphorus were significantly larger from the tidal creek than from the Sarcocornia zone, and the opposite applied to nitrogen. The presence of brachyuran crabs . the most numerous macrofauna on the marsh enhanced the flux of carbon, nitrogen and phosphorus from the marsh biocoenosis, largely as a result of the effect of their bioturbation. Evidence is examined which suggests that differential mobilization of nutrients in the two zones by crabs is responsible for biogeochemical coupling of these two regions , which may account for the elevated productivity of salt- marsh systems

El texto completo de este trabajo no está disponible en el Repositorio Académico UPC por restricciones de la casa editorial donde ha sido publicado. / Abstract INTRODUCTION: In order to reduce salt consumption in Spanish speaking countries it is necessary to know the level of salt knowledge in the population. However, there are no tools in Spanish to measure salt knowledge, but the only valid tool of measurement is the 'Salt Knowledge Questionnaire' (SKQ) developed in Australia, in English. MATERIALS AND METHODS: A validation study was conducted in three phases: (Phase1) Translation of the original Australian version into Spanish; (Phase2) Cultural adaptation based on a Spanish-speaking population such as Peru and following criteria used in the development of the original questionnaire which was evaluated by a panel of experts; (Phase3) Construct validity by comparing the scores of three groups (experts, medical students and non-experts) and reliability by performing a test retest. RESULTS: The translation of the SKQ into Spanish maintained a semantic equivalence with the original questionnaire and a panel of experts accepted the cultural adaptation. The SKQ enables discrimination between those who know and those who do not because differences of scores were found between the group of experts, students and non-experts (P<.001). A good overall internal consistency of the instrument was found (KR20=0.69) and a good overall intraclass correlation (0.79) and no test variations in test-retest (P>.05). CONCLUSIONS: The SKQ questionnaire in Spanish is valid, reliable and is a suitable first tool to measure knowledge about salt in the Spanish language. It is considered possible to adapt it culturally to the Spanish-speaking country that wishes to use it. / Revisión por pares

Crabs are conspicuous inhabitants of temperate salt marshes and tropical mangroves and interact with their environment through several processes. However, detailed information on crab community processes is absent for most South African estuaries and nearshore coastal regions. This study evaluated the primary producers supporting crab species in the salt marsh dominated Swartkops estuary and the mangrove Mngazana estuary. Various methods estimating crab abundances were also assessed in different microhabitats and the larval distribution of crabs in the coastal zone was also investigated. Various methods for estimating crab abundance have been employed in the past, each with its inherent biases. The microhabitat of a mangrove forest in Australia was structurally altered by the manipulation of the litter, pneumatophores and the associated algae. These alterations did not affect the behavioural activity or the numbers of crabs recorded in any of the experimental treatments by either visual counts or pitfall traps. However, the number of crabs caught in the pitfall traps differed between the sites. Species-specific behaviour which was not investigated in this study may bias crab abundance estimates when using pitfall traps and therefore requires further investigation. Benthic consumers inhabiting shallow coastal environments may ultimately have the origin of their nutrition in a number of possible sources. Isotopic and gut content analysis of Thalamita crenata and juvenile Scylla serrata in the Mngazana estuary in South Africa revealed that these two portunids are able to share a habitat by resource partitioning. Differences were noted for species-specific utilization of primary producers not only between seasons within a site, but also between sites. This highlighted the use of locally produced primary producers sustaining food webs in estuaries. Mangrove production in the Mngazana estuary is very important and contributes to most of the carbon in the underlying sediments in the mangrove forest. However, the relatively large number of species and biomass encountered in this estuary may also be attributed to the fact that the different species are able to exploit of a number of different resources. The variation in stable isotope analysis of the different crab species throughout the estuary indicated that these crabs able to occupy the same habitat by feeding on a number of different resources and may preferentially select for a specific primary producer. A stable isotope of crabs in the salt marsh Swartkops estuary indicated that the dominant primary producer sustaining crab communities may even take place on a relatively smallscale. Sesarma catenata found at the inner marsh site recorded more depleted carbon signatures than those encountered in the other sites approximately 100 m away, and reflected signatures similar to the locally-encountered inner marsh plants. The relatively enriched nitrogen signatures of the anthropogenically-impacted Swartkops estuary is an indication of extensive inputs due to urbanization and industrialization, in contrast to the relatively pristine Mngazana estuary which exhibited low nitrogen signatures. Emphasis has been placed on the abiotic component of the exchange of nutrients and energy, although living organisms may also be transported, both actively and passively, between ecosystems. Little variation in either species composition or abundance was found between seasons for the larval distribution of brachyuran crabs on the east coast of South Africa. Due to the lack of published larval descriptions, larvae could not be identified to species level and it was therefore not possible to identify whether the larvae were hatched or spawned in an estuary or in a marine environment, or whether the larvae originated in the northern tropical regions. Frequent wind-reversals which are common in this region may retain larvae close inshore and supply the southern temperate locations with larvae from the northern locations. In conclusion, this study has shown that in highly productive systems with a number of potential primary producers, the crabs that inhabit the estuary show a marked diversity in resource utilization which could potentially allow a number of closely related species to occupy different trophic levels. This study also highlights the importance of locally produced sources in an estuary, which may occur on very small scales and this needs to be factored in with the design of any future stable isotope studies of this nature.

The ever-expanding need for energy, including those related to fossil fuels, is behind the drive to explore more complicated regions, such as salt and subsalt provinces. This exploration quest relies heavily on recorded surface seismic data to provide precise and detailed subsurface properties. However, conventional seismic processing algorithms including the state-of-the-art full-waveform inversion (FWI) fail to recover those features in many areas of salt provinces. Even the industrial solution with substantial involvement of manual human-interpretation has faced challenges in many regions. In this thesis, I attempt to replace those manual, and somewhat erroneous, steps to the velocity building in salt provinces with a mathematically robust algorithm under the FWI machinery. I, specifically, regularize FWI by penalizing the velocity drops with depth with a new more flexible function. Although promising, FWI is computationally very expensive, especially for large 3D seismic data. It updates an initial guess of the model iteratively using the gradient of the misfit function, which requires lengthy computations and large memory space/disc storage. Based on the adjoint state method, gradient computation usually requires us to store the source wavefield, or include an additional extrapolation step to propagate the source wavefield from its temporary storage at the boundary. To mitigate this computational overburden, I propose an amplitude excitation gradient calculation based on representing the source wavefield history by a single, specifically the most energetic arrival. In this thesis, I also propose a novel-multiscale scheme based on ux-corrected transport (FCT) to reduce artifacts in the gradient direction due to the noise present in seismic data. FCT comprises of two finite difference schemes: a transport and a diffusion to compute the flux at a grid point. I observe a couple of benefits in FCT-based FWI. First, it yields a smooth gradient at the earlier iterations of FWI by promoting the lower frequency content of the seismic data. Second, it is easily compatible with the existing FWI code, and with any objective function. The multiscale strategy starts with a large smoothing parameter and relaxes it progressively to zero to achieve the final inverted model from traditional FWI.