Le collagène est un élément majeur de l'architecture des organes chez les mammifères. Cette protéine s'organise en structures tridimensionnelles (3D) spécifiques à chaque tissu et responsables de leurs propriétés biophysiques et biomécaniques. La microscopie multiphoton permet de visualiser le collagène fibrillaire dans les tissus biologiques, sans aucun marquage, grâce aux signaux de génération de second harmonique (SHG). Cette thèse présente des mesures SHG résolues en polarisation (P-SHG), dans le but de caractériser la structure 3D du collagène dans divers tissus, de l'échelle moléculaire à l'échelle macroscopique.Nous avons d'abord étudié la sensibilité et la fiabilité des mesures P-SHG, afin de valider cette technique comme un outil quantitatif d'observation de la structure 3D du collagène dans des tissus intacts.En collaboration avec le Laboratoire de Chimie de la Matière Condensée de Paris, cette technique a ensuite été appliquée à l'étude de systèmes modèles de collagène présentant une organisation de type cristal liquide, afin de caractériser les conditions physico-chimiques menant à des phases proches de celles observées à l’état stabilisé dans la cornée.Enfin, nous présentons une imagerie SHG en différence circulaire (CD-SHG), permettant de déterminer la polarité des fibrilles de collagène par rapport au plan de l'image. Ces mesures sont complémentaires de l'information obtenue en P-SHG. Une première mise en place expérimentale de cette technique est présentée dans des coupes histologiques de cornée humaine. Nous présentons de plus les résultats préliminaires d'une imagerie corrélative CD-SHG/I-SHG, en collaboration avec l'INRS, donnant une information complète sur la polarité des fibrilles de collagène. / Collagen is a key element of organs architecture in mammals. This protein is organized in tridimensional (3D) structures specific to each tissue and responsible for its biophysical and biomechanical properties. Multiphoton microscopy allows the visualization of unstained fibrillar collagens in biological tissues, by use of their endogenous second harmonic generation (SHG) signals. This work focuses on polarization-resolved SHG measurements (P-SHG), in order to characterize the collagen 3D structure in tissues, from the molecular scale to the macroscopic scale.We first studied the sensitivity and the reliability of those P-SHG measurements, and validated this technique as a quantitative tool to probe collagen structure in intact tissues.In collaboration with the Laboratoire de Chimie de la Matière Condensée de Paris, this technique was then applied to the study of collagen model systems with a liquid crystal like organization, in order to find the physico-chemical conditions leading to organizations close to the one observed in cornea.Finally, we introduced SHG circular difference measurements (CD-SHG). This technique allowed us to probe the polarity of collagen fibrils with respect to the image plane. Those measurements complement P-SHG measurements. An experimental implementation of this technique is introduced, as well as preliminary measurements in cornea. We present also preliminary results from CD-SHG/I-SHG correlative imaging, in collaboration with INRS, giving full information about collagen polarity.

Recent analyses by polarization resolved second-harmonic (SH) microscopy have demonstrated that ferroelectric (FE) domain walls (DWs) can possess non-Ising wall characteristics and topological nature. These analyses rely on locally analyzing the properties, directionality, and magnitude of the second-order nonlinear tensor. However, when inspecting FE DWs with SH microscopy, a manifold of different effects may contribute to the observed signal difference between domains and DWs, i.e., far-field interference, Čerenkov-type phase-matching (CSHG), and changes in the aforementioned local nonlinear optical properties. They all might be present at the same time and, therefore, require careful interpretation and separation. In this work, we demonstrate how the particularly strong Čerenkov-type contrast can selectively be blocked using dark- and bright-field SH microscopy. Based on this approach, we show that other contrast mechanisms emerge that were previously overlayed by CSHG but can now be readily selected through the appropriate experimental geometry. Using the methods presented, we show that the strength of the CSHG contrast compared to the other mechanisms is approximately 22 times higher. This work lays the foundation for the in-depth analysis of FE DW topologies by SH microscopy.