Malaria continues to be a major cause of mortality and morbidity especially in Sub-Saharan Africa. The emergence and spread of drug resistant parasites has highlighted the need for new chemically diverse, effective drugs. Historically, one of the major sources of antimalarial agents and novel template compounds has been higher order plants. The widespread use of medicinal plants for the treatment of malaria in South Africa represents a diverse resource of potential antimalarial drugs. Two South African plants, Vernonia staehelinoides and Oncosiphon piluliferum, were identified as potential sources of new antimalarial drugs through a national multidisciplinary-consortium project aimed at scientifically validating South African medicinal plants for the treatment of malaria. The in vitro antiplasmodial activity of extracts of these plants warranted further investigation to identify the biologically active components. Bio-assay guided fractionation based on in vitro antiplasmodial activity against the D10 P. falciparum strain was used to identify the compounds responsible for the observed activity. Compounds were purified using silica gel column chromatography. The structures of the isolated compounds were elucidated using spectroscopic techniques. Bioassay-guided fractionation of the organic extracts of V. staehelinoides leaves identified a pair of structurally-related hirsutinolides with significant in vitro antiplasmodial activity. The compounds were found to be cytotoxic at similar concentrations but proved to be interesting scaffolds for potential structure-activity relationship studies. Three germacranolides and two eudesmanolides were identified through bioassay-guided fractionation of the organic O. piluliferum extract. Selected derivatizations were conducted in order to fully characterize the compounds. The absolute configuration of the major active germacranolide was determined using Mosher's method. The effect of the reduction of the <font face="symbol"> a</font>-methylene group of the major active germacranolide on antiplasmodial activity and cytotoxicity was also investigated. The 5 compounds and the reduction product were found to possess varying degrees of in vitro antiplasmodial activity and cytotoxicity. None was sufficiently active or selective to be a viable drug candidate but the potential for further structure-activity relationship studies exists. / Dissertation (MSc (Chemistry))--University of Pretoria, 2007. / Chemistry / unrestricted

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O processo de transformação microbiana de metabólitos secundários é uma técnica emergente no Brasil e que apresenta enorme potencial para obtenção de substâncias biotransformadas com novas e diferentes moléculas, as quais podem apresentar melhor desempenho de suas atividades biológicas. O objetivo do presente projeto foi efetuar transformações microbianas de metabólitos secundários oriundos da espécie vegetal Viguiera robusta Gardn. (família Asteraceae), com ênfase nas lactonas sesquiterpênicas (LSTs), para posterior avaliação de sua citotoxicidade frente a linhagens celulares. As etapas de isolamento e purificação de LSTs foram realizadas através de métodos cromatográficos e a elucidação estrutural através de métodos espectroscópicos. A avaliação da atividade citotóxica dos metabólitos biotransformados foi proposta em virtude de estudos iniciais indicarem potencial citotóxico da LST budleína A frente às linhagens SK-BR-3 (adenocarcinoma de mama) e células leucêmicas JURKAT. / The microbial transformation of secondary metabolites is an emerging technique in Brazil with high potential to obtain biotransformed compounds with new and different molecules which can show enhanced biological activities. Herein, microbial transformations of secondary metabolites from Viguiera robusta Gardn. (family Asteraceae), with emphasis in sesquiterpene lactones (STLs), were proposed with the aim to evaluate their cytotoxic activity against tumor cells lines. Isolation and purification of STLs were carried out through chromatographic methods and structural elucidation by spectroscopic methods. The evaluation of cytotoxic activity of the biotransformed metabolites was proposed due to the fact that previous studies indicated potential cytotoxic activity of the STLs budlein A against SK-BR-3 and JURKAT cells lines.

<p>The genus <i>Arnica</i> (Asteraceae) was investigated for phylogenetic relationships and sesquiterpene lactone (STL) content with the aims to trace the evolutionary history of the genus and to investigate possible congruencies between DNA sequence data, secondary chemistry, and biological activity. </p><p>Complex evolutionary patterns in <i>Arnica</i> are evident from phylogenetic analyses of chloroplast regions (the <i>rpl16</i> and <i>rps16</i> introns and the <i>psbA–trnH</i>, <i>ycf4–cemA</i>, and <i>trnT–L</i> spacers), nuclear ribosomal regions (the internal and external transcribed spacers) and the nuclear low-copy DNA region coding for the second largest subunit of RNA polymerase II (<i>RPB2</i>) between exons 17 and 23. Polymorphism was detected in nuclear ribosomal and low-copy regions<i>,</i> likely caused by polyploidy and agamospermy. Lineage sorting and/or hybridization is a possible explanation for incongruencies between topologies of the different DNA regions. None of the five subgenera in <i>Arnica</i> constitute a monophyletic group according to any of our analyses. </p><p>Sesquiterpene lactone profiles were compared to nuclear ribosomal DNA data using phylogenetic inference and principal component analysis for 33 accessions of 16 species. Clusters supported by both STL chemistry and ribosomal DNA sequence data consist of multiple accessions of the same species (e.g.<i> A montana </i>and<i> A. longifolia</i>), indicating that these species are well defined both genetically and chemically, based on our sampling. Support for subspecies classification of <i>A. chamissonis</i> and <i>A. parryi</i> was found in chemical data. For the first time STLs are reported from subtribe Madiinae, sister to Arniciinae.</p><p>Anti-inflammatory properties, as measured by inhibition of human neutrophil elastase release from neutrophils and inhibition of the binding of transcription factor NF-κB to DNA, were investigated for extracts of 12 <i>Arnica</i> species. <i>Arnica montana</i>, <i>A. chamissonis</i> and <i>A. longifolia</i> accessions show high inhibitory effects in both bioassays. Generally, species with a more diverse STL chemistry also possess the strongest inhibitory activity in the bioassays.</p>

The genus Arnica (Asteraceae) was investigated for phylogenetic relationships and sesquiterpene lactone (STL) content with the aims to trace the evolutionary history of the genus and to investigate possible congruencies between DNA sequence data, secondary chemistry, and biological activity. Complex evolutionary patterns in Arnica are evident from phylogenetic analyses of chloroplast regions (the rpl16 and rps16 introns and the psbA–trnH, ycf4–cemA, and trnT–L spacers), nuclear ribosomal regions (the internal and external transcribed spacers) and the nuclear low-copy DNA region coding for the second largest subunit of RNA polymerase II (RPB2) between exons 17 and 23. Polymorphism was detected in nuclear ribosomal and low-copy regions, likely caused by polyploidy and agamospermy. Lineage sorting and/or hybridization is a possible explanation for incongruencies between topologies of the different DNA regions. None of the five subgenera in Arnica constitute a monophyletic group according to any of our analyses. Sesquiterpene lactone profiles were compared to nuclear ribosomal DNA data using phylogenetic inference and principal component analysis for 33 accessions of 16 species. Clusters supported by both STL chemistry and ribosomal DNA sequence data consist of multiple accessions of the same species (e.g. A montana and A. longifolia), indicating that these species are well defined both genetically and chemically, based on our sampling. Support for subspecies classification of A. chamissonis and A. parryi was found in chemical data. For the first time STLs are reported from subtribe Madiinae, sister to Arniciinae. Anti-inflammatory properties, as measured by inhibition of human neutrophil elastase release from neutrophils and inhibition of the binding of transcription factor NF-κB to DNA, were investigated for extracts of 12 Arnica species. Arnica montana, A. chamissonis and A. longifolia accessions show high inhibitory effects in both bioassays. Generally, species with a more diverse STL chemistry also possess the strongest inhibitory activity in the bioassays.

Plant secondary metabolites (SM) are widely used by humans in many ways (pharmacy, biotechnology etc.). For making their use even more effective, it is important to know the seasonality of these chemicals in plants and what affect those changes. Three Artemisia species (Artemisia annua, A. absinthium, A. vulgaris) were cultivated during one vegetation season (from April to September 2016). Plant growth parameters and the beginning of their generative stages were observed, and leaf samples were collected regularly. Samples of some plants were collected repeatedly. A generalist herbivore (migratory locust), was used as a proxy for studying changes in plant secondary metabolism during the vegetation season. The results proved presence of defence secondary metabolites in plants except A. vulgaris species where the role of SM in defence was not shown. Levels of SM changed nonlinearly during the vegetational season and were time-dependent. Plant size did not influence the levels of SM in plants. Levels of SM were low at the beginning of the experiment followed by rapid increase and remaining on maximal levels. The plants which lost their biomass repetitively grew slowly and bloomed later than the plants which were clipped only once. A delay trend showing seasonality of the plant SM was not proved. In...

O processo de transformação microbiana de metabólitos secundários é uma técnica emergente no Brasil e que apresenta enorme potencial para obtenção de substâncias biotransformadas com novas e diferentes moléculas, as quais podem apresentar melhor desempenho de suas atividades biológicas. O objetivo do presente projeto foi efetuar transformações microbianas de metabólitos secundários oriundos da espécie vegetal Viguiera robusta Gardn. (família Asteraceae), com ênfase nas lactonas sesquiterpênicas (LSTs), para posterior avaliação de sua citotoxicidade frente a linhagens celulares. As etapas de isolamento e purificação de LSTs foram realizadas através de métodos cromatográficos e a elucidação estrutural através de métodos espectroscópicos. A avaliação da atividade citotóxica dos metabólitos biotransformados foi proposta em virtude de estudos iniciais indicarem potencial citotóxico da LST budleína A frente às linhagens SK-BR-3 (adenocarcinoma de mama) e células leucêmicas JURKAT. / The microbial transformation of secondary metabolites is an emerging technique in Brazil with high potential to obtain biotransformed compounds with new and different molecules which can show enhanced biological activities. Herein, microbial transformations of secondary metabolites from Viguiera robusta Gardn. (family Asteraceae), with emphasis in sesquiterpene lactones (STLs), were proposed with the aim to evaluate their cytotoxic activity against tumor cells lines. Isolation and purification of STLs were carried out through chromatographic methods and structural elucidation by spectroscopic methods. The evaluation of cytotoxic activity of the biotransformed metabolites was proposed due to the fact that previous studies indicated potential cytotoxic activity of the STLs budlein A against SK-BR-3 and JURKAT cells lines.

Sesqiterpene lactones, a group of plant secondary metabolites which include Cnicin from Cnicus benedictus plant, have an anti-proliferative and anti-tumor effect on mammalian cells by activating specific signaling pathways while also generating oxidative stress. These factors combined drive tumor cell apoptosis. A few of these compounds have reached clinical trials and seem to be a promising chemotherapeutics. The focus of this work is to elucidate the effect of cnicin on C-MYC transcription factor and oncoprotein which is overexpressed in majority of tumor tissues, the effect of cnicin on DEAD-box RNAhelicase DDX3 and on the expression levels of several metabolic genes is also studied. Through the use of western blotting, immunodetection and qPCR it was found out, that cnicin is regulating the expression of C-MYC oncoprotein on both transcriptional and translational levels, while also lowering C-MYC protein stability probably through the effect on PIM-2 kinase. Cnicin is not affecting the total amount of DDX3 protein in cells, but it seems it is lowering its degradation rate. The possible transcriptional regulation of DDX3 by cnicin is still not clear and requires further research. With the use of LC-MS quantitative analysis and qPCR, it was found out that cnicin does not affect the metabolism of...

Neste trabalho foram realizados estudos conformacionais de algumas lactonas sesquiterpenicas e cálculos teóricos de deslocamento químico. O estudo conformacional é dividido em tres etapas distintas. A primeira etapa se dá pela busca conformacional em mecânica molecular, onde foram encontradas as possíveis conformações assumidas pelo sistema em estudo. Na segunda etapa, as conformações encontradas foram otimizadas em mecânica quântica. O último passo neste estudo foi o cálculode deslocamento químico e a posterior correlação com os dados experimentais. / This work is aimed on the theoretical calculation of chemical shifts of sesquiterpene lactones, based on the conformational preferences of the compounds. This conformational study is set up in three stages. The first one is a conformational search using molecular mechanics, to assess the relevant conformations of the system under study. In the second stage, the conformations are optimized by quantum mechanics, for the refinement of both the structural assignment and energy calculation of the most stable conformers found in the previous step. The last step is the theoretical calculation of chemical shifts. Finally the weighted average of calculated values is compared to experimental data.

A química de produtos naturais sempre foi uma fonte importante de novas substâncias e de substâncias bioativas. No mundo moderno, o homem utiliza os produtos naturais para diversos fins: corantes, edulcorantes, essências, defensivos agrícolas e principalmente medicamentos. Com o desenvolvimento das técnicas de isolamento de substâncias, cresceu a necessidade de organizar as informações obtidas e também a criação de meios para a identificação mais rápida das substâncias isoladas. Esta foi uma das necessidades que fez surgir a Quimioinformática. Quimioinformática é uma disciplina que utiliza os métodos da informática para organizar dados químicos, analisar estes dados e gerar novas informações a partir destes dados. Esta ferramenta tem sido utilizada com sucesso em procura por novas drogas (QSAR/QSPR), elucidação estrutural automatizada de substâncias orgânicas e em cálculos e previsão de propriedades físico-químicas de diversas moléculas. Os objetivos do presente trabalho foram o estudo fitoquímico de espécies dos gêneros Dimerostemma e Ichthyothere com o intuito de isolar novas substâncias e o desenvolvimento de técnicas envolvendo quimioinformática com o intuito de auxiliar a elucidação estrutural de produtos naturais. Realizou-se a técnica de microamstragem de tricomas glandulares de diversas espécies pertencentes a gêneros da tribo Heliantheae (Viguiera, Tithonia, Dimerostemma). Através da microamostragem foi possível identificar diversas substâncias presentes nos tricomas glandulares das espécies analisadas. Das duas espécies de Dimerostemma investigadas (D. brasilianum e D. rotundifolium) foi possível identificar dois germacrolidos e dois eudesmanolidos, enquanto que de Ichthyothere terminalis foi possível a identificação de dois melampolidos, todos eles lactonas sesquiterpênicas. Foram treinadas redes neurais artificiais para a realização da identificação dos esqueletos carbônicos de determinadas substâncias a partir dos dados obtidos através dos espectros de RMN 13C, sendo que os resultados obtidos podem ser considerados satisfatórios. Foi desenvolvido um software para efetuar a identificação automática de substâncias através da comparação com uma biblioteca de padrões que possui dados cromatográficos de 51 lactonas sesquiterpênicas. Esse software, chamado de NAPROSYS, também é capaz de fazer comparação de dados de RMN de amostra com dados de RMN presentes em uma biblioteca de dados, tornando possível a identificação imediata de substâncias presentes na biblioteca e também auxiliar a elucidação estrutural de substâncias que não estão nela presentes. Para testar a eficiência do NAPROSYS, o programa foi utilizado com sucesso para identificar LSTs através da microamostragem de tricomas glandulares. A eficiência do NAPROSYS em identificar dados de RMN de substâncias presentes na biblioteca foi testada com substâncias isoladas do gênero Tithonia e Viguiera que possuem substâncias bem descritas na literatura e já isoladas no nosso laboratório, sendo que os resultados apresentados foram excelentes. Criou-se também dois modelos de redes neurais para prever tempos de retenção de lactonas sesquiterpênicas em cromatografia líquida (QSRR) com o objetivo de melhorar o desempenho do NAPROSYS em análises de dados cromatográficos. Os resultados para este caso, embora coerentes, precisam ser melhorados. Neste trabalho concluimos que o uso das técnicas clássicas juntamente com as novas técnicas de Quimoinformática pode se tornar uma ferramenta muito eficaz para a elucidação estrutural e busca de substâncias com determinadas propriedades químicas ou mesmo na bioprospecção de novas substâncias bioativas. / Natural products chemistry has always been an important source for new andbioactive compounds. In modern world, mankind uses natural products to do many tasks: colouring, as essences, as agricultural defensives and many as medicines. Within the development of compound isolation techniques, the need for information organisation has grown. The need for quickly identification of isolated compounds has also grown. This was one of the necessities that made Chemoinformatics emerge. Chemoinformatics is a discipline that uses informatics as a tool to organise, analise and to generate new knowledge from chemical data. This tool has been used with success in automate structure elucidation, drug development (QSAR/QSPR) and to predict chemical-physical data of many molecules. The aims of the present work were the phytochemical study of species of the genera Dimerostemma and Ichthyothere to isolate new compounds, and the development of chemoinformatics techniques to aid natural products structure elucidation. The glandular trichome microsampling was made for diverse species of genera from the tribe Heliantheae (Viguiera, Tithonia, Dimerostemma). Many compounds were identified through glandular trichome microsampling. Two germacrolides and two eudesmanolides were identified from Dimerostemma species (D. brasilianum and D. episcopale), while from Ichthyothere terminalis two melampolides were identified, all of them being sesquiterpene lactones. Artificial Neural Networks were trained to make skeleton identification from data obtained from 13C NMR and the obtained results can be considered satisfactory. A software was developed to make automatic compound identification through the comparation with a compound library that possesses data from 51 STLs. This software is called NAPROSYS is also able to compare the NMR data of the sample with the NMR data stored into a compound library, making the imediate identification of compounds present into library possible and also help the structure elucidation of unknown compounds. To test NAPROSYS\' efficience to identify NMR data of compunds sored into the library was made with compounds isolated from species of Tithonia and Viguiera genera, because these genera has well describe compounds in the literature and that has been isolated in our laboratory, and the obtained results are excellent. Two Artificial Neural Network models were created to predict the retention time of sesquiterpene lactones in liquid cromatography (QSRR) with the aim of improve NAPROSYS performance in cromatographic data analysis. The results for this case, although coherent, can be improved. The conclusion of this work is that the use of classical techniques with the new techniques of chemoinformatics can be a very efficient tool to make structure elucidation, search for compounds with certain chemical properties and even the search for new bioactive compounds.