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Retrogenes are a group of functional genes produced by gene retroduplication events during evolution. It has been observed that many retrogenes have formed since the evolutionary divergence of Anopheles mosquitoes from the Aedes lineage as a result of developing heteromorphic sex chromosomes. It has been further observed that these retroduplications predominately occur from parent genes on the heteromorphic X chromosome to autosomes and have a predisposition to have enriched expression in testis. In order to investigate the nature of this male-biased expression in testis, we utilized bioinformatic techniques to identify retrotransposition events and assign them relative ages based on evolutionary branches of divergence. This list of parent genes and retrogenes were then analyzed and a total of twenty-five gene pairs were selected for further examination. Available gene expression data in the form of RNA-seq and DNA microarray were used in tandem with gene annotation data to computationally investigate gene pairs in An. coluzzii. These pairs were further investigated experimentally by means of RT-PCR conducted on dissected head, thorax, abdomen, and reproductive organs in both male and female Anopheles coluzzii Mopti strain. Testis and male accessory glands (MAGs) were also investigated by this method in An. coluzzii. Available expression data support previously observed testis enriched expression of retrogenes and provides evidence for the predominate expression of retrogenes occurring in postmeiotic cells suggesting retrogene involvement in sperm development. Experimental evidence revealed a small group of five retrogenes which exhibit the expected male-biased expression in male testis with little to no expression in female ovaries, although a shared expression in the heads of both sexes was observed. Of the five retrogenes, four carry out energy related functions involving mitochondria, suggesting contribution to energy requirements of developing sperm. Testis and MAG experiments in An. coluzzii revealed a predisposition for retrogenes to be expressed in testis while parent genes tended to have higher expression in MAGs, and this phenomenon is partially supported by DNA microarray expression data. Overall, these results suggest further investigation of retrogenes in An. coluzzii may reveal unique functions in male mosquito fertility that are exploitable in genetic approaches to mosquito control. / Master of Science in Life Sciences / Malaria is a potentially deadly disease which effects thousands of people every year. Malaria around the world is spread by multiple species of mosquitoes in a genus called Anopheles. Controlling the populations of these disease spreading mosquitoes is essential to preventing the spread of malaria. Current insecticide-based approaches used to stop mosquitoes are becoming less effective overtime as mosquitoes become resistant. A potential way to develop new techniques for mosquito control is through research involving mosquito reproductive genetics. Understanding the genes involved in how mosquitoes reproduce could improve future techniques designed to reduce or prevent mosquitos from reproducing. This research focuses on a group of genes called retrogenes which have formed over the evolution of these mosquitoes via the duplication from a separate parent gene. In mosquitoes these retrogenes are understood to be involved in male reproduction. The retrogenes involved in male mosquito reproduction could have important functions in male sexual reproduction and sterility. These important genes could be manipulated to interrupt whatever important functions these genes have in reproduction. In this research we first computationally identified retrogenes and their parent genes and categorized them by age. We then utilized available annotation and expression data to analyze the potential significance of retrogenes to male fertility and found that multiple retrogenes tended to be expressed during sperm development. Lastly, we conducted gene expression experiments using dissected head, thorax, abdomen, and reproductive organs in both male and female Anopheles mosquitoes. Results revealed unique patterns of expression that suggest male specific roles of five retrogenes in testes and head expression in both males and females suggesting a possible role in mating behavior. These results provide evidence that retrogenes do have functional roles in male fertility specifically related to the maturation and development of sperm.

Theory predicts that sexually antagonistic mutations will be over- or under-represented on the X and Z chromosomes, depending on the average dominance coefficient of the mutations. However, as little is known about the dominance coefficients for new mutations, the effect of sexually antagonistic selection is difficult to predict. To elucidate the role of sexually antagonistic selection in the evolution of Z chromosome gene content in chicken, we analyzed publicly available microarray data from several somatic tissues as well as somatic and germ cells of the ovary. We found that the Z chromosome is enriched for genes showing preferential expression in ovarian somatic cells, but not for genes with preferential expression in primary oocytes or non-sex-specific somatic tissues. Our results suggest that sexual antagonism leads to higher abundance of female-benefit alleles on the Z chromosome. No bias towards Z-linkage of oocyte-enriched genes can be explained by lower intensity of sexually antagonistic selection in ovarian germ cells compared to ovarian somatic cells. An alternative explanation would be that meiotic Z chromosome inactivation hinders accumulation of oocyte-expressed genes on the Z chromosome. Our results are consistent with findings in mammals and indicate that recessive rather than dominant...

Sexual conflicts arise when there is a difference in how females and males of a species or population achieve their maximum reproductive fitness. In intralocus sexual conflicts, alleles at a given locus are exposed to conflicting, or antagonistic, selection pressures. Based on a Genome-wide association study on sexually antagonistic genes in Drosophila melanogaster (fruit flies), the aim of this study was to investigate whether the candidate gene CG3598 exhibits sexually antagonistic effects on fitness between the 2 identified alleles of the gene. The study was performed on females from a Canton-S population of D. melanogaster who, by genetic manipulation through CRISPR Cas9, carried one of the 2 alleles of the CG3598. 6 excision lines of females had allele 1 and 5 excision lines had allele 2. The females were mated with "wild type" males from a Canton-S population in mediums prepared with about 6 mg of live dry yeast, after which the females were moved to separate mediums to lay their eggs. After 12 days, the adult offspring were counted and statistical calculations were performed on the average number of offspring per female for each line and allele. An Independent sample t-test showed that the females’ average fecundity did not differ between alleles (p = 0.059) and a Nested ANOVA analysis indicated that the average fecundity for each line within each allele differed (p = 0.023). Due to the fact that similar studies have found the same result, it may be necessary to investigate and possibly change the experimental design of the method to enable competition between females with different genetic conditions in order to observe a difference in fertility based on the females' ability to compete. / Sexuella konflikter uppstår när det finns en skillnad i hur honor och hanar i en art eller population uppnår sin maximala reproduktiva fitness. Vid intralocus sexuella konflikter utsätts alleler vid ett givet locus för motstridiga, eller antagonistiska, selektionstryck. Baserat på en Genome-wide association study om sexuellt antagonistiska gener hos Drosophila melanogaster (bananflugor) syftade denna studie till att undersöka huruvida genkandidaten CG3598 uppvisar sexuellt antagonistiska effekter på fitness mellan de 2 identifierade allelerna av genen. Undersökningen utfördes på honor från en CantonS-population av D. melanogaster som genom genmodifiering av CRISPR Cas9 bar en av de olika alleler av genen CG3598. 6 linjer av honor bar allel 1 och 5 linjer bar allel 2. Honorna parades med ”wild type”-hanar från en CantonS-population i rör preparerade med ca 6 mg levande torrjäst, varpå honorna förflyttades till separata rör för att lägga sina ägg. Efter 12 dagar räknades de vuxna avkommorna och statistiska beräkningar utfördes på det genomsnittliga antalet avkommor per hona för respektive linje och allel. Ett oberoende t-test visade att honornas genomsnittliga fekunditet inte skiljde sig mellan alleler (p=0,059) och en Nested ANOVA-analys indikerade att genomsnittlig fekunditet för varje linje inom respektive allel skiljde sig (p=0,023). Då även liknande studier funnit samma resultat kan det vara nödvändig att studera och eventuellt förändra den experimentella designen av metoden för att möjliggöra konkurrens mellan honor med olika genetiska förutsättningar för att kunna observera en skillnad i fekunditet baserat på honornas förmåga att konkurrera.