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2,3-Dipalmitoyl-S-Glycerylcystein (Pam2Cys), ein Toll-like-Rezeptor 2 (TLR2)-Ligand, aktiviert dendritische Zellen und erhöht die Expression von HLA-DR auf deren Zelloberfläche. Natürliche Killerzellen (NK-Zellen) können über die Ausschüttung von Zytokinen das erworbene Immunsystem stimulieren. Zudem weist die Entdeckung von HLA-DR auf NK-Zellen, besonders auf CD56bright-NK-Zellen, auf eine Verbindung zwischen angeborenem und erworbenem Immunsystem hin. Gekoppelt an ein immundominantes Peptidepitop aus dem Glykoprotein D des Herpes-Simplex-Virus (HSV) Typ 2, wurde Pam2Cys in dieser Arbeit als potentieller lipopeptidbasierter HSV-Impfstoff eingesetzt, um die Effekte dieser Vakzine auf NK-Zellen zu untersuchen. Die Einflüsse der Vakzine wurden anhand der CD69-, HLA-DR- und TLR2-Expression auf und in NK-Zellen nach Inkubation mit Pam2Cys untersucht. Die Analyse der Gesamt-NK-Zellpopulation ließ nur mit Hilfe der quantitativen Real-Time-PCR einen signifikanten Anstieg der TLR2-Expression erkennen, jedoch nicht durchflusszytometrisch. Inkubierte NK-Zellen zeigten deutlich mehr HLA-DR auf der Zelloberfläche, als unstimulierte NK-Zellen. Die Untersuchung der zwei großen NK-Zellsubpopulationen, CD56bright und CD56dim, ergab, dass stimulierte CD56bright-Zellen wesentlich mehr HLA-DR und TLR2 aufwiesen, als stimulierte CD56dim-Zellen. Die Expression des Aktivierungsmarkers CD69 stieg in der Gesamtpopulation der NK-Zellen nicht in signifikantem Maße an, zeigte jedoch eine Zunahme nach Inkubation mit den Pam2Cys-Molekülen. Die Aufnahme der Lipopeptide in NK-Zellen wurde mit der konfokalen Mikroskopie bestätigt. Diese Ergebnisse zeigen, dass die hier verwendete HSV-Vakzine von NK-Zellen aufgenommen wird und sie die Ausbildung von Oberflächenrezeptoren auf diesen Zellen moduliert. Insbesondere die Expressionssteigerung von HLA-DR auf CD56bright-NK-Zellen deutet auf die Fähigkeit dieser Zellen hin, Antigene zu präsentieren und stellt einen weiteren Mechanismus vor, der eine impfstoffbezogene Immunantwort unterstützen kann. Die vorliegende Arbeit bildet eine Basis für weiterführende Studien an NK-Zellen hinsichtlich der Antigenpräsentation im Allgemeinen und der Antigenpräsentation nach Stimulation durch eine Vakzine im Besonderen. / The Toll-like receptor 2 (TLR2) ligand 2,3-Dipalmitoyl-S-Glycerylcystein (Pam2Cys) enhances the surface expression of HLA-DR on dendritic cells and activates them. Natural killer cells (NK cells) may stimulate the adaptive immune system via the production of cytokines. Furthermore the detection of HLA-DR on NK cells, especially on CD56bright NK cells, hints at a connection between innate and adaptive immunity. In this study Pam2Cys was used as a potential lipopeptide-based HSV vaccine attached to an immunodominant epitope in herpes simplex virus (HSV) type 2 glycoprotein D. The effects of this vaccine on NK cells were analysed here. Examination of the influence of this vaccine was performed by measuring the expression of CD69, HLA-DR and TLR2 on and in NK cells after incubating them with Pam2Cys. Using quantitative real-time PCR, a significant increase of TLR2-mRNA in the entire NK cell population was detectable; however flow cytometry was not able to confirm these results. Incubated NK cells showed considerably more HLA-DR than unstimulated NK cells. Analysis of the two big NK cell subpopulations, CD56bright and CD56dim, revealed essentially more HLA-DR and TLR2 on stimulated CD56bright cells, compared to stimulated CD56dim cells. Expression of the activation marker CD69 after incubation was not triggered significantly on NK cells altogether; nevertheless an increase could be measured. Confocal microscopy confirmed an uptake of lipopeptides into NK cells. These data demonstrate the surface receptor modulation on NK cells by a potential HSV vaccine and the ability of NK cells to endocytose Pam2Cys. Particularly, the increase of HLA-DR on CD56bright NK cells points at the ability of these cells to present antigens, introducing a new mechanism able to support a potent immune response to a vaccination. This study provides a basis for further work on NK cells in terms of antigen presentation in general and antigen presentation after stimulation by a vaccine in particular.

Zellstress in Form von lytischer Herpes-simplex-Virustyp-1-Infektion, Hitze und Salzstress führt dazu, dass die RNA-Polymerase II über das 3'-Ende von manchen Genen hinaus transkribiert. Dies geht bei Herpes-simplex-Virustyp-1-Infektion teilweise mit offenem Chromatin nach dem 3'-Ende einher. In dieser Arbeit wurden verschiedene Methoden getestet, um diese Effekte genomweit zu eruieren. Dabei wurden die Peak-Caller ATAC-seq-Pipeline, F-Seq, Hotspots und MACS2 getestet sowie mit der Hilfsgröße „downstream Open Chromatin Regions“ gearbeitet. Weiterhin wurde das R-Skript „Pipeline for ATAC-seq and 4sU-seq plotting“ entwickelt, mit dem sich die Dynamik der oben beschriebenen Effekte zeigen lässt: Die Offenheit des Chromatins ist bei Herpesinfektion zusätzlich zur Erhöhung nach dem 3'-Ende generell erhöht. Die Transkription der RNA-Polymerase II über das 3'-Ende hingegen nimmt nach 75k Basenpaaren rapide ab. Die Ergebnisse des R-Skripts im Bezug auf Salz und Hitzestress decken sich mit vorbeschriebener Literatur, in der gezeigt wurde, dass eine Erhöhung der Offenheit des Chromatins nach dem 3'-Ende nicht stattfindet. / Cell stress in the form of lytic herpes simplex virus type 1 infection, heat, and salt stress causes RNA polymerase II to transcribe beyond the 3' end of some genes. This is sometimes associated with open chromatin beyond the 3' end in herpes simplex virus type 1 infection. In this work, several methods were tested to elicit these effects genome-wide. The peak caller ATAC-seq-Pipeline, F-Seq, hotspots, and MACS2 were tested, and the auxiliary variable "downstream open chromatin regions" was used. Furthermore, the R script "Pipeline for ATAC-seq and 4sU-seq plotting" was developed to show the dynamics of the effects described above: Chromatin openness is generally increased in herpes infection in addition to being increased after the 3' end. In contrast, RNA polymerase II transcription across the 3' end decreases rapidly after 75k base pairs. The results of the R-script in relation to salt and heat stress are consistent with pre-described literature showing that an increase in chromatin openness after the 3' end does not occur.

Simplex algorithms have been used to optimize for size, number and morphology of lysozyme and apoferritin crystals. This approach requires fewer experiments than the single-factor-at-a-time method or factorial designs and will be useful in conserving materials on the International Space Station. The simplex method has the possible advantage that it conserves on materials by reducing the number of experiments required to optimize a crystallization system. The process is iterative and exploratory and should allow optimum microgravity conditions to be determined which might very well be different from the optimum conditions on Earth. Because the simplex method uses simple mathematical operations to calculate the next set of crystallization conditions it will be easier for crystal growers to implement than factorial designs. Factorial experiments are based on varying all factors simultaneously at a limited number of factor levels. This results in a model that is used to determine the influence of each factor and their interactions. Factorial design experiments are especially useful at the beginning of an experimental study and as a screening tool to investigate a large number of factors. The simplex method is an optimization method which is model-independent and requires no fitting of models to data. Also, when applied to protein crystal growth the simplex method does not rely on an absolute quality score. Instead, with each iteration a comparison is made to the last experiment and the results are assigned as being "better or worse". In this study, commercially obtained apoferritin was purified from 65% monomeric apoferritin to 92% monomeric apoferritin by size exclusion chromatography. Simplex optimization found the best apoferritin crystals were obtained at 15 mg/ml apoferritin, 2.0% CdSO4, 25°C using the hanging drop vapor diffusion method of crystallization and at 24 mg/ml apoferritin, 1.5% CdSO4, 25°C using the containerless crystallization method. For lysozyme, the simplex method found the best crystals at 19 mg/ml lysozyme, 7.0% (w/v) NaCl, pH 4.0, 25°C using the hanging drop vapor diffusion method of crystallization. For both proteins, the optimum conditions were found with less than ten experiments using very little protein. Finally, we report that the factors to be considered in the successful application of this method to crystallization are the number of variables to be studied, the initial conditions, step size and analysis of crystal quality.

Atomization can be achieved by discharging liquid at relative high velocities into a slow moving environment (hydraulic nozzles) or by discharging liquid at low velocities into a fast moving gas flow (air-blast nozzles). These two types of injector nozzles are featured in majority of the industry applications such as power generation, food or pharmaceutical powder formation, spray painting, petroleum refining, and thermal sprays. The most common atomizer used in combustion engines is the pressure-swirl nozzle (Simplex nozzle) to obtain a homogenous mixture at different equivalence ratios. The experimental studies performed with pressure-swirl nozzles have reported contradictory results over the last few years. Thus, the fundamentals of spray dynamics, such as spray formation, liquid breakup length, droplet breakup regimes, and coalescence still need to be understood for a pressure-swirl nozzle. An experimental study of the breakup characteristics of various liquids and fuels with different thermal physical properties emanating from hollow cone hydraulic injector nozzles induced by pressure-swirling was investigated. The experiments were conducted using two nozzles with different orifice diameters 0.3mm and 0.5mm and injection pressures (0.3-4MPa) which correspond to Rep = 7,000-31,000 depending on the liquids being tested. Three laserbased techniques, i.e., Shadowgraph, Particle Image Velocimetry (PIV) and Phase Doppler Particle Anemometry (PDPA) were utilized in this study. Although each technique had its limitation in different flow regimes, the results were cross-validated, and generally showed correct trends in axial and radial measurements of velocity and diameter for different nozzles, Weber and Reynolds numbers. iii The spatial variation of diameter and velocity arises principally due to primary breakup of liquid films and subsequent secondary breakup of large droplets due to aerodynamic shear. Downstream of the nozzle, coalescence of droplets due to collision is also found to be significant. Different types of liquid film break up was considered and found to match well with the theory. The spray is subdivided into three zones: near the nozzle, a zone consisting of film and ligament regime, where primary breakup and some secondary breakup take place; a second zone where the secondary breakup process continues, but weakens, and the centrifugal dispersion becomes dominant, and a third zone away from the spray where coalescence is dominant. Each regime has been analyzed in detail to understand the effect of surface tension and viscosity. Surface tension and viscosity were engineered to mimic fuels, which were then compared with real fuels such as Ethanol, Jet-A and Kerosene. Results show similarity in the diameter in the beginning stages of breakup but in the coalescence regime, the values deviate from each other, indicating that the vapor pressure also plays a major role in this regime.

The need for multiple access strategies arises whenever a number of users have to share a communication resource, since it is usually either cost prohibitive or impractical to dedicate a communication channel to a particular user. A need for such algorithms arises in many instances, particularly in applications utilizing wireless systems where all users access a common channel or medium. Such random access techniques as ALOHA and slotted ALOHA have been successfully implemented in a number of wireless applications. One of the major drawbacks of these algorithms is the necessity of a return path from the central station to each system user, which makes their use both inefficient and expensive for applications where one-way communication would suffice. For such applications, a need remained for a random access algorithm which can maximize the probability of successful message transmission in a one-way communication environment. A random access technique that addresses the above-mentioned need is developed. With this technique, each user sends an original message of predetermined length to a central receiver. The user then retransmits the message a specified number of times in a predetermined interval reserved for the retransmission process. The time interval between each successive retransmission of a given message is random. Assuming total annihilation of all colliding messages, the expression for the probability of successful transmission of a given message in terms of the major channel parameters is theoretically formulated. This technique offers a significant improvement, compared to a single transmission, in ensuring that a message is successfully received. The actual message collision dynamics in this system are experimentally studied using two different types of direct-sequence spread spectrum receivers, one employing a sliding correlator and the other using a matched filter. The spreading code in such systems offers extra protection for messages against possible interferers. The results indicate that it is often possible to properly receive a given message in the presence of co-channel interferers, thus significantly improving the overall system performance. These results are subsequently incorporated with the propagation data for several different types of microcells to arrive at a more precise theory of the link. / Ph. D.

<p> Though Neutron Activation Analysis is one of the most sensitive multielement analysis methods, Compton interference in complex sample matrices usually presents a problem when choosing irradiation and decay times for analysis. While various scientists have attempted to solve the problem, the approaches taken to date have the drawbacks of either requiring standard spectra of the sample components or not giving the optimum times automatically and simultaneously. The purpose of this thesis was to find a method to automatically and simultaneously obtain the optimum times for Instrumental Neutron Activation Analysis using the Modified Simplex Method to evaluate the best figure of merit calculated from an advance predicted spectrum of the sample.</p> / Thesis / Master of Science (MSc)

In order to facilitate a biophysical analysis of the carboxy terminal acidic transactivation domain (AAD) of Vmw65 from Herpes Simplex Virus Type 1 (HSV-1), an overexpression system in Escherichia coli was constructed and optimized to produce milligram quantities of this polypeptide. Purification of the polypeptide was facilitated by creating a fusion protein to glutathione S-transferase (GST) from Schizosoma japonicum using a commercially available vector. Upon thrombin digestion of the fusion protein, the carrier and AAD products were resolved by anion-exchange chromatography. With typically 15 mg of AAD available from a 12 litre culture, several biophysical studies were initiated. Circular dichroism and fluorescence spectroscopy both described a polypeptide with an extended structure reminicent of a random-coil; that is, it did not possess substantial quantities of known elements of secondary structure such as a-helicies and β-sheets under physiological conditions. A new structure high in α-helical content was induced upon addition of trifluoroethanol to mimic a hydrophobic milieu. Ultracentrifugation data supported the spectroscopic observations by describing an extended, monomeric polypeptide. The ultimate goal of the study, a teritiary structure, was sought by attempting to crystallize AAD with popular salts and organic solvents. Biologically, the described random-coil structure of AAD could be relevant to its role as a promoter and stablizer of the transcriptional pre-initation complex, the determining step in gene expression. A structurally labile domain would support AAD’s ability to interact with several targets including TFIID and TFIIB, though not necessarily by similar mechanisms. The requirement for a drastic conformational change such as a random-coil to α-helical transition currently remains unclear though observations made in this study of AAD in trifluoroethanol have shown that a conformational change is indeed possible. With a means of producing large quantities of AAD, the opportunity now arises to study its interaction with available cloned targets. The ensuing biophysical studies will then provide a greater understanding of AAD’s important role in gene expression. / Thesis / Master of Science (MSc)

OBJECTIVE: The overarching goal of this study was to examine the immunostimulatory potential of oHSV-1 rQNestin34.5v2 in syngeneic murine GBM models, perform in vitro screens for upregulation of immune checkpoint molecules in infected glioma cells, and evaluate the antitumor activity of the most promising combination immunovirotherapies. METHODS: The oncolytic activity of HSV-1 rQNestin34.5 was evaluated in CT-2A and GL261 syngeneic murine glioma models. Immunoassays were conducted to assess secretion of damage associated molecular patterns including ATP, HMGB1, Calreticulin, HSP70 and other proinflammatory mediators by infected glioma cells. In vitro screens for expression of inhibitory ligands by glioma cells following HSV-1 rQNestin34.5v2 infection at various doses were analyzed by flow cytometry. Intratumoral HSV-1 rQNestin34.5v2 administration and/or intraperitoneal anti-TIGIT (clone 1B4)/anti-NK1.1 treatments were performed in C57BL/6 mice bearing orthotopic CT-2A glioma to determine effect on overall survival. RESULTS: HSV-1 rQNestin34.5v2 exhibited greater capacity to infect CT-2A and minimal capacity to infect GL261 cells suggesting differences in permissiveness in HSV- 1 replication between the two GBM models. Infection stimulated immunogenic cell death as evidenced by surface expression of calreticulin and HSP70 and elevated extracellular release of ATP and HMGB1 in the GL261 model. CD155 and CD112 (both ligands of TIGIT) as well as PD-L1 were significantly highly expressed in glioma cells. TIGIT was found to be overexpressed in tumor infiltrating NK, CD4 and CD8 T cells suggesting systemic therapy with TIGIT blockade antibodies could have therapeutic utility in combination with HSV-1 rQNestin34.5v2 in GBM. Benefit in overall survival was not observed by anti-TIGIT monotherapy, and combination treatment with HSV-1 rQNestin34.5v2 exhibited modest therapeutic effect with a cure rate 25% in mice bearing intracranial CT-2A tumors. Depletion of NK cells prior to HSV-1 rQNestin34.5v2 administration attenuated brain edema and synergized with rQNestin34.5v2 virotherapy. CONCLUSION: Our findings show that the combination of HSV-1 rQNestin34.5v2 virotherapy with anti-TIGIT checkpoint blockade immunotherapy and/or NK cell inhibition represents a promising strategy to overcome primary resistance to immune checkpoint inhibitors in GBM. / 2025-02-03T00:00:00Z

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