Thesis (M.S.)--University of Oregon, 2008. / Typescript. Includes vita and abstract. Includes bibliographical references (leaves 84-87). Also available online.

In this study, biological and chemical characteristics were determined for two high-elevation meadow-to-forest transitions located in the Central Oregon Cascades. The chloroform fumigation incubation method (CFIM) was used to determine microbial biomass C(MBC) and the N flush due to fumigation (NF), and meadow values were compared to forest values for each. Meadow and forest MBC values were also compared for estimates of MBC determined with microscopy and these values were compared to CFIM estimates. Net N mineralization and C mineralization were determined for an 85-d incubation period and used as a measure of labile C and N. Microbial biomass C and NF were then compared to these labile pools in order to investigate the relationship between the amount of each nutrient stored in biomass and the magnitude of the respective labile nutrient pool for each. Long-term and short-term net N mineralization rates and C/N ratios were also compared for meadow and forest soils, and the relationship between these two characteristics was examined. In general, microbial biomass estimates made with the CFIM method did not show any significant differences between meadow and forest soils. Mean MBC for both sites as determined by CFIM was estimated to be 369 and 406 μg C g⁻¹ soil in meadow and forest soils, respectively. Mean NF was estimated to be 37 and 56 μg N g⁻¹ soil in meadow and forest soils, respectively. MBC estimates made using microscopy showed biomass C to be greater in the forest than in the meadow. Mean MBC as determined by microscopy was estimated to be 529 and 1846 μg C g⁻¹ soil in meadow and forest soils, respectively. The NF measured as a percentage of the net N mineralized over 85 d was significantly greater in the forest than in the meadow soils, but was a substantial percentage in both. The means of these values were 30 and 166% in meadow and forest soils, respectively. This led to the conclusion that biomass N may be a very important pool of stored labile N in this ecosystem. Net N mineralization rates were almost always greater in the meadow than in the forest soils. Net N mineralization for the 10-d incubations averaged 21 μg N g⁻¹ soil in the meadow and 8 μg N g⁻¹ soil in the forest Rates for long-term N mineralization averaged 126 μg N g⁻¹ soil in the meadow and 52 μg N g⁻¹ soil in the forest. Net N mineralization rates were correlated with C/N ratios for both short-term and long-term incubations. / Graduation date: 2002

In arid and semi-arid deserts, soils are commonly covered with biological soil crusts. The study of arid biocrusts and their ecological function has become increasingly common in the literature over the last several decades. Interestingly, no mention is made of biological soil crusts in forested ecosystems, raising the question as to whether they exist in these areas and if they do, why they have yet to be recognized as such? Through the use a parallel logic, this study finds that biocrusts do indeed exist in forests, a novel relationship in forest ecology and seeks to determine if there exist ecophysical explanations for the abundance and distribution throughout the forest landscape. This study examined the effects of climate variables and substrate types on the abundance, distribution and overall cover of forest soil biocrust at fifty-two sites in southern Oregon, U.S.A. Sites were randomly selected within established buffer zones in the Siuslaw, Rogue-Sisikyou, Umpqua, and Fremont-Winema National Forests. The methods of Belnap et al 2001 were tested and then modified for application in forested ecosystems. Data were collected on the relative abundance and distribution of biocrust morphological groups across available substrates, community biocrust morphology, aspect, elevation and soil texture, pH and organic matter content. Site-specific data on average annual precipitation and minimum/maximum temperatures was collected using the PRISM Climate Model. This study found substrate colonization by specific morphological groups mixed across the study; though dominant communities were observed for each substrate present, substrate availability appears to be confounded by a number of variables (climate, stand age and structure and litter layer) not controlled for in this study. Biocrust community morphologies varied across sites, primarily influenced by the surface texture of the substrate and morphology of the individual. Relatively smooth surfaces (rock, bare soil) often resulted in smooth biocrust morphologies, whereas rough surfaces (dead wood, bare soil) tended to result in a rolling morphology. Litter layer directly influenced the relative proportion of substrates colonized, notably affecting dead wood and mineral soil biocrusts. Total biocrust cover increased as precipitation increased as did biocrust preference for dead wood substrates while mineral soil remained unchanged and rock surfaces were negatively represented. Aspect generally followed the anticipated distribution of total biocrust cover with the highest cover on N and NW aspects and lowest on the W aspect. Increases in elevation were negatively related to overall biocrust cover. Soil texture was not found to be directly related to overall biocrust cover, attributed in part to the highly adaptive nature of the biocrust community. Soil organic matter (SOM) influenced total biocrust cover with positive correlations between total cover and increasing SOM content. Soil pH increased as expected across the precipitation range (17 to 159 in/yr) of the transect. Total biocrust cover was found to trend with soil pH, but is believed to be attributed to the parallel relationship between precipitation and pH, rather than pH alone given the relative moderate pH range (4.39 to 6.54) of the study. The distribution and abundance of forest soil biocrusts is strongly influenced by precipitation. The confounding influence of precipitation to litter layer depth and organic matter content (through gradients of vegetative productivity) and soil pH further are concluded to influence substrate preference by morphological groups. Across the variables examined, similarities between the two communities (arid and forest) in response to climate and soil chemistry show parallel relations, justifying the formal establishment of biological soil crust community in forested regions. The differences between communities related to the presence of trees validate the establishment of forest soil biocrusts as distinct community in both form and ecological function with the forests. / Graduation date: 2013

Soil organic matter (SOM) is the terrestrial biosphere's largest pool of organic carbon (C) and is an integral part of C cycling globally. Soil organic matter composition typically can be traced directly back to the type of detrital inputs; however, the stabilization of SOM results as a combination of chemical recalcitrance, protection from microbial decomposition within soil structure, and organo-mineral interactions. A long-term manipulative field experiment, the Detrital Input and Removal Treatment (DIRT) Project, was established to examine effects of altering detrital inputs (above- vs. below-ground source, C and nitrogen (N) quantity, and chemical quality) on the stabilization and retention of SOM. Surface mineral soil was collected from two DIRT sites, Bousson (a deciduous site in western Pennsylvania) and H.J. Andrews (a coniferous site in the Oregon Cascade Mountains), to examine the influence of altering detrital inputs on decomposability and mean residence time of soil organic matter and different organic matter fractions. Soil organic matter was physically separated into light fraction (LF) and heavy fraction (HF) organic matter, by density fractionation in 1.6 g mL⁻¹ sodium polytungstate (SPT). Density fractionation in SPT resulted in the mobilization and loss of ~25% of total soil organic C and N during the physical separation and rinsing of fractions during recovery, which was also the most easily decomposed organic matter present in the bulk soil. At H.J. Andrews, this mobilized organic matter had a short mean residence time (MRT), indicating that it originated from fresh detrital inputs. In contrast, at Bousson, the organic matter mobilized had a long MRT, indicating that it originated from organic matter that had already been stabilized in the soil. Mean residence times of LF from Bousson varied widely, ~3 y from doubled litter and control plots and 78-185 y for litter removal plots, while MRT of HF was ~250 y and has not yet been affected by litter manipulations. Results from long term incubation of LF and HF material supported these estimates; respiration was greatest from LF of doubled litter and control plots and least from HF of litter removal plots. In contrast, MRT estimated for LF and HF organic matter from H.J. Andrews were similar to each other (~100 y) and were not affected by litter manipulation. These estimates were also supported by the incubation results; there was not a difference in cumulative respiration between detrital treatments or density fractions. The results from the coniferous site may be due to a legacy of historically large inputs of coarse woody debris on the LF and it may be decades before the signal of detrital manipulations can be measured. Alternatively, these highly andic soils may be accumulating C rapidly, yielding young HF ages and C that does not differ substantially in lability from coniferous litter-derived LF. The DIRT Project was intended to follow changes in soil organic matter over decades to centuries. As expected, manipulation of detrital inputs has influenced the lability and mean residence time of the light fraction before the heavy fraction organic matter; however, it will be on much more lengthy time scales that clear differences in organic matter stabilization in response to the alteration of detrital inputs will emerge. Soil CO₂ efflux is a compilation of CO₂ from many sources, including root respiration and the decomposition of different organic matter fractions, roots, and exudates. If the sources of CO₂ have different isotopic signatures, the isotope analysis of CO₂ efflux may reveal the dominant sources within the soil profile. In a short incubation experiment of density fractions from both sites, respired CO₂ reflected the isotopic signature of the organic matter fraction after 30 days, but was more enriched in ¹³C. Initially CO₂ was isotopically depleted in ¹³C relative to the organic matter fraction and the period of depletion related to the amount of easily degraded organic matter present at H.J. Andrews only. / Graduation date: 2006