Identification of fungi is based on macroscopic observations of morphology and microscopic characteristics. These conventional methods are time-consuming and requires expert knowledge. For the past years Matrix-assisted laser desorption ionization-time of flight mass spectrometry has been used for routine bacterial identification in clinical laboratories but not yet in the same extension for fungi. In this study three preanalytic preparation methods for fungi were evaluated in order to shorten the processing time in routine laboratory performance. Clinically relevant strains (n=18) of molds and dermatophytes were cultivated on agar plates and prepared according to the different preparation methods for protein extraction. Each strain was analyzed in quadruplicate by the MALDI Biotyper and the database Filamentous Fungi Library 1.0. The results showed that the genus and species identification rates of the least time-consuming direct extraction method were 33% and 11% respectively. Using the formic acid extraction method, the genus and species identification rates were 83% and 44%, respectively. For the longest sample preparation method, liquid media culturing before formic acid extraction, successfully identified all strains except one, which resulted in an identification rate of 94% and 78% respectively. This study shows that preparing samples in cultured liquid media MADLI-TOF MS effectively identified fungal strains to both genus- and species-level. This method was however too time-consuming and cumbersome to be recommended as a replacement to the conventional method. Future studies should be aimed at expanding the reference library and making the direct extraction method more reproducible in terms of obtaining more reliable identification rates.

This thesis is based on a selection of six different experimental techniques used for studies in atomic and molecular physics. The techniques analysed in the thesis are compared to find similarities in strategies and ways to avoid sources of error. Paper 1 deals with collision based spectroscopy with 60 keV Xe6+ ions on sodium and argon gas targets. Information on energy of Rydberg states in Xe5+ is unveiled by optical spectroscopy in the wavelength range from vacuum ultraviolet (VUV) to visible. In paper 2, the fast ion-beam laser spectroscopy (FIBLAS) is adapted for measuring hyperfine structure of barium isotopes in an isotopically pure ion-beam. This techniques involves changing the isotope during the measurement to minimize sources of error in measurement and enhance the signal from lesser abundant isotopes. The FIBLAS technique is used in paper 3 to study samarium ions. The ions are optically pumped and the recorded optical nutation is used to measure transition probabilities. This technique eludes the difficulties inherent in relative intensity measurements of all the radiative transitions from an excited state. In Paper 4, optical emission spectroscopy is used in the VUV region to study noble gas mixture discharges. The source of the emission bands near the resonance lines of krypton and xenon are found to be heteronuclear dimers. In paper 5, radiation from a pulsed argon plasma with admixture of nitrogen is studied with time resolved spectroscopy in the VUV and ultraviolet wavelength ranges to investigate the mechanism of energy transport. A metastable state of atomic argon is found to be an important source of energy to many radiative processes. In Paper 6, photoelectron spectroscopy (PES) on thiophene, on 3-bromothiophene and on 3,4-dibromothiophene using time-of-flight photoelectron-photoelectron coincidence technique and conventional PES to investigate the onset of double ionisation compared to the onset of single ionisation in molecules.

A new instrument using a time-of-flight (TOF) mass filter (MF) for resonance enhanced multiphoton ionization (REMPI) studies of gas phase molecules was developed. This instrument was designed to make use of the selectivity of the REMPI process and the sensitivity of a TOF-MF with a microchannel plate detector. A pulsed valve inlet system was tested to determine its effectiveness in “cooling” molecules but it was not used for the bulk of the studies performed. The instrument was tested using molecular and atomic bromine, atomic carbon, and atomic iodine. The atomic bromine, carbon, and iodine, were generated by the photodissociation of molecular bromine, hydrocarbons, and methyl iodide respectively. Nitrogen gas in air was used to test the pulsed valve system. The instrument was then used to conduct REMPI studies of five dichlorotoluene (DCT) isomers (2,4-DCT; 2,5-DCT; 3,4-DCT; 2,6-DCT; and 2,3-DCT). REMPI studies of six dichloroaniline (DCA) isomers, including 2,5-DCA; 3,4-DCA; 3,5-DCA; 2,6-DCA; 2,4-DCA; and 2,3-DCA were conducted. Six isomers of dichlorophenol (DCP) were studied (2,5-DCP; 3,4-DCP; 3,5-DCP; 2,3-DCP; 2,4-DCP; and 2,6-DCP). It was determined that the 2,3-DCP; 2,4-DCP; and 2,6-DCP isomers photodissociated to form CCl, which itself could be observed through a REMPI process. The results from the REMPI studies of the dichloroaromatics and data from previous ultraviolet, infrared, and RAMAN studies of these molecules was used in order to assign the observed peaks. The observed 0,0 π→π* transition energies of the dichloroaromatics studied were used along with ultraviolet 0,0 π→π* transition energies from previous works in order to discuss substituent effects. A qualitative method of predicting the relative location of 0,0 π→π* transition energies of dichloroaromatics was developed.

This thesis studies the design and implementation of an ultra-sonic water depth sounder. The depth sounder is implemented in a hand-held smart console used by divers. Since the idea of echo sounding is to measure the flight time between transmitting the signal and receiving the echo, the main challenge of this task is to find a time-of-flight (ToF) estimation for a signal in noise. It should be suitable for this specific application and robust when implemented in the device. The thesis contains an investigation of suitable ToF methods. More detailed evaluations of the matched filter, also known as the correlation method, and the linear phase approach are done. Aspects like pulse frequency and duration, speed of sound in water and underwater noise are taken into account. The ToF-methods are evaluated through simulation and experiments. The matched filter approach is found suitable based on these simulations and tests with signals recorded by the console. This verification leads to the implementation of the algorithm on the device. The algorithm is tested in real time, the results are evaluated and improvements suggested. / Denna rapport behandlar skattning av vattendjup med hjälp av ultraljudspulser och implementation av detta. Djupmätaren implementeras i en handhållen dykarkonsoll. Eftersom grundidén i ekolodning är att mäta tiden mellan att pulsen skickas iväg och att ekot tas emot är en stor del av utmaningen att hitta en lämplig metod för att skatta flykttiden för en signal i brus. Metoden ska passa för detta användingsområde och vara robust. Rapporten tar upp tidigare forskning gjord inom flykttidsestimering. De metoder som utvärderas för implementation är det matchade filtret, också kallad korrelationsmetoden, och linjär fas-metoden. Andra aspekter som avvägs och utreds är pulsfrekvens och pulsvaraktighet, ljudets hastighet och brus under vattnet. Metoderna för att skatta flykttid utvärderas genom simuleringar. Det matchade filtret bedöms vara lämpligt baserat på dessa simuleringar och experiment med data inspelad med konsollen. Denna verifikation leder till att algoritmen implementeras på konsollen. Den implementerade algoritmen testas i realtid, resultaten utvärderas och förbättringar föreslås.

The use of short columns, higher carrier gas velocity and fast temperature programs in Comprehensive Two-Dimensional Gas Chromatography coupled to Time-of- Flight Mass Spectrometry (GC x GC/TOFMS) technique is expected to increase the speed of analysis up to several orders of magnitude when compared to conventional gas chromatography (GC) or gas chromatography/mass spectrometry (GC/MS). A systematic evaluation of the GC x GC/TOFMS configuration for high-speed applications has received little attention in the literature. The feasibility of High Speed Comprehensive Two-Dimensional Gas Chromatography coupled to Mass Spectrometry (High speed GC x GC/MS) for complex mixtures has been investigated in this thesis. A particular focus was placed on comparing conventional scanning quadrupole mass spectrometry (qMS) with a newly available non-scanning time-of-flight instruments (TOFMS). Experiments were carried out using GC/qMS, GC x GC/qMS, GC/TOFMS and GC x GC/TOFMS both in normal (slow) and fast temperature rates coupled with high frequency modulation in GC x GC. Initially a complex mixture consists of 24 semivolatile compounds was used as the analyte for the above purpose. In the initial experiments parameters like acquisition rate and duty cycle for qMS were determined to evaluate the effectiveness of the instrument for fast analysis. The practical duty cycle value obtained for the qMS was only about 18 % for single ion and one compound at a dwell time of 10 ms in SIM mode. In both high-speed GC/qMS and high-speed GC x GC/qMS techniques only about 40 % of the components in the complex mixture were found to be well separated. The acquisition rate of scanning instruments like qMS is incompatible for fast eluting peaks in high speed GC. TOFMS that has an acquisition rate of several hundred spectra per second offer the potential to define the fast GC peaks accurately. The high quality spectra from TOFMS also enable deconvolution of coeluting peaks in the complex mixtures. The advantage of the automated spectral deconvolution is demonstrated for the identification of the coeluting peaks in the complex mixtures. Coelution of peaks is also observed with highspeed GC/TOFMS technique. The high-speed GC x GC/TOFMS was also tested with two different analyte system ??? A pesticide mixture and platformate (an aromatic mixture) to evaluate the suitability for high-speed analysis of complex mixtures. A poor resolution was observed for the pesticide mixture in the two-dimensional plane and it appeared, as there was nearly no orthogonal separation in the second dimension. The platformate mixture displayed a better two-dimensional separation. Chromatographic peak resolution is not really a primary requirement for locating and identifying the coeluting compounds in high-speed GC x GC/TOFMS technique. However, it was observed that the high-speed GC x GC/TOFMS too faced problem to unscramble the mass spectra of those compounds with similar structure and sharing the same unique masses.

Thesis (Ph.D.)--Ohio University, March, 2005. / Includes bibliographical references (p. 163-176)

Thesis (Ph.D.)--Ohio University, March, 2005. / Title from PDF t.p. Includes bibliographical references (p. 163-176)

La dérive de pulvérisation peut être mesurée au champ ou en soufflerie. Paradoxalement, les tests au champ sont sujets à de grandes variations dues aux conditions atmosphériques mais peuvent être plus facilement réalisés contrairement aux tests en soufflerie. Ainsi les principaux modèles de dérive sont basés sur des mesures au champ alors que peu de modèles s’inspirent de mesures en soufflerie. L’objectif de ce travail a été de définir un ou des descripteurs de la dérive sur la base de l’analyse de courbes de dépôts obtenues dans la soufflerie d’IRSTEA Montpellier. Par rapport aux souffleries existantes, un protocole d’exposition de longue durée a été utilisé avec une forte densité d’échantillonnage. Un plan expérimental comprenant 99 modalités a été réalisé en tenant compte de différents types de buses (FF, AI, AI Twin jet), différente hauteurs de rampe de 40 à 80cm, différentes positions de la rampe (frontale, latérale et angles intermédiaires) et différentes vitesses de vent entre 2 et 7.5m s-1. Les résultats ont montré que le taux de dérive à 5m sous le vent (DR5) correspond au descripteur le plus robuste si l’on tient compte du large spectre de paramètres et de réglages. Des modèles de premier ordre ont été définis pour l’expression de l’effet de la vitesse du vent ainsi que de la hauteur de rampe selon le temps de vol des gouttes (ToF). Ainsi il est possible de comparer des résultats issus de conditions expérimentales différentes et de simuler l’effet de la vitesse du vent et la hauteur de la rampe pour un type donné de buse. Des mesures in situ de taille de gouttes ont confirmé la pertinence du temps de vol comme base de l’expression des résultats. / Spray drift might be measured either infield or in a wind tunnel through specific sampling strategies. Paradoxically field tests are subjected to a high variability due to the atmospheric conditions but can be more easily conducted in the absence of a wind tunnel. The result is that most of spray drift models are based on infield measurements. Conversely very few models were developed on the basis of wind tunnel measurements. The objective of this work was to define spray drift descriptors from the analysis of drift curves in IRSTEA wind tunnel. Compared to the majority of existing wind tunnels, a long duration exposure protocol was applied with a high sampling density. A large experimental plan of 99 modalities were conducted including nozzle types (FF, AI, AI Twin jet), boom heights from 40 to 80cm, boom positions (frontal, lateral, and intermediate angles) and wind velocities from 2 to 7.5ms-1. Results showed that the drift ratio at 5m (DR5) was the most robust drift indicator considering the wide range of parameters and operations conditions (wind velocity, boom height). First order models were drawn for the expression of the effect of the wind velocity and the boom height according to the droplet time of flight (ToF). As a result it was possible to compare data from different experimental conditions and to simulate the effect of the wind velocity and the boom height for a given type of nozzle. In situ droplet size measurements confirmed the relevance of the time of flight expression.

Time of flight is an imaging technique with uses depth information to capture 3D information in a scene. Recent developments in the technology have made ToF cameras more widely available and practical to work with. The cameras now enable real time 3D imaging and positioning in a compact unit, making the technology suitable for variety of object recognition tasks An object recognition system for locating teats is at the center of the DeLaval VMS, which is a fully automated system for milking cows. By implementing ToF technology as part of the visual detection procedure, it would be possible to locate and track all four teat’s positions in real time and potentially provide an improvement compared with the current system. The developed algorithm for teat detection is able to locate teat shaped objects in scenes and extract information of their position, width and orientation. These parameters are determined with an accuracy of millimeters. The algorithm also shows promising results when tested on real cows. Although detecting many false positives the algorithm was able to correctly detected 171 out of 232 visible teats in a test set of real cow images. This result is a satisfying proof of concept and shows the potential of ToF technology in the field of automated milking.

An investigation was initiated, targeting snapshot 3D image sensors, with the objective to match the speed and resolution of a scanning sheet-of-light system, without using a scanning motion. The goal was a system capable of acquiring 25 snapshot images per second from a quadratic scene with a side from 50 mm to 1000 mm, sampled in 512×512 height measurement points, and with a depth resolution of 1 µm and beyond. A wide search of information about existing 3D measurement techniques resulted in a list of possible schemes, each presented with its advantages and disadvantages. No single scheme proved successful in meeting all the requirements. Pulse modulated time-of-flight is the only scheme capable of depth imaging by using only one exposure. However, a resolution of 1 µm corresponds to a pulse edge detection accuracy of 6.67 fs when visible light or other electromagnetic waves are used. Sequentially coded light projections require a logarithmic number of exposures. By projecting several patterns at the same time, using for instance light of different colours, the required number of exposures is reduced even further. The patterns are, however, not as well focused as a laser sheet-of-light can be. Using powerful architectural concepts such as matrix array picture processing (MAPP) and near-sensor image processing (NSIP) a sensor proposal was presented, designed to give as much support as possible to a large number of 3D imaging schemes. It allows for delayed decisions about details in the future implementation. It is necessary to relax at leastone of the demands for this project in order to realise a working 3D imaging scheme using concurrent technology. One of the candidates for relaxation is the most obvious demand of snapshot behaviour. Furthermore, there are a number of decisions to make before designing an actual system using the recommendations presented in this thesis. The ongoing development of electronics, optics, and imaging schemes might be able to meet the 3D snapshot demands in a near future. The details of light sensing electronics must be carefully evaluated and the optical components such as lenses, projectors, and fibres should be studied in detail.