Pre-surgical planning for endodontic microsurgery is facilitated by the use of cone beam computed tomography (CBCT). The purpose of this study was to determine whether limited field CBCT accurately predicts buccal cortical plate perforations due to endodontic lesions. Thirty-five roots that underwent microsurgical root end resection were included in this study. Prior to the surgery, 90 voxel CBCTs were taken with a Carestream 9300. The scans were analyzed by an endodontic resident and oral radiologist to determine the presence of a perforation in the buccal plate. These findings were compared to the clinical appearance of the bone. There was a significant relationship between a judgment of perforation made on the basis of CBCT and actual perforation as observed clinically. The CBCT prediction was accurate 83% of the time. A predicted perforation was validated in 88% of the instances and a predicted non-perforation was validated in 75% of the instances.

BACKGROUND: Clinicians rely on radiographs and clinical exam to assess infrabony defects. However, two-dimensional radiographs have many limitations. Three-dimensional imaging has shown promise and has provided more precise measurements of defects created in skulls. The aim of this study is to compare the diagnostic efficacy of cone beam computed tomography to clinical measurements in patients presenting with infrabony defects. METHODS: The study population included 20 patients with 25 infrabony defects. Clinical measurements of pocket depth (PD), gingival margin (GM), bone sounding (BS) were obtained and PD and BS were compared to CBCT measurements. RESULTS: The average difference between the means of measurements obtained by BS and by CBCT was 1.08mm with BS always being the greater value. BS measurement was statistically significantly different with p<0.05 from CAL and CBCT values. CONCLUSION: The CBCT provided measurements that are on average 1.08mm smaller than bone sounding measurements.

Accounting for respiration motion during imaging helps improve targeting precision in radiation therapy. Respiratory motion can be a major source of error in determining the position of thoracic and upper abdominal tumor targets during radiotherapy. Thus, extracting respiratory motion is a key task in radiation therapy planning. Respiration-correlated or four-dimensional CT (4DCT) imaging techniques have been recently integrated into imaging systems for verifying tumor position during treatment and managing respiration-induced tissue motion. The quality of the 4D reconstructed volumes is highly affected by the respiratory signal extracted and the phase sorting method used. This thesis is divided into two parts. In the first part, two image-based respiratory signal extraction methods are proposed and evaluated. Those methods are able to extract the respiratory signals from CBCT images without using external sources, implanted markers or even dependence on any structure in the images such as the diaphragm. The first method, called Local Intensity Feature Tracking (LIFT), extracts the respiratory signal depending on feature points extracted and tracked through the sequence of projections. The second method, called Intensity Flow Dimensionality Reduction (IFDR), detects the respiration signal by computing the optical flow motion of every pixel in each pair of adjacent projections. Then, the motion variance in the optical flow dataset is extracted using linear and non-linear dimensionality reduction techniques to represent a respiratory signal. Experiments conducted on clinical datasets showed that the respiratory signal was successfully extracted using both proposed methods and it correlates well with standard respiratory signals such as diaphragm position and the internal markers’ signal. In the second part of this thesis, 4D-CBCT reconstruction based on different phase sorting techniques is studied. The quality of the 4D reconstructed images is evaluated and compared for different phase sorting methods such as internal markers, external markers and image-based methods (LIFT and IFDR). Also, a method for generating additional projections to be used in 4D-CBCT reconstruction is proposed to reduce the artifacts that result when reconstructing from an insufficient number of projections. Experimental results showed that the feasibility of the proposed method in recovering the edges and reducing the streak artifacts.

The optical design for a dual modality endoscope based on piezo scanning fiber technology is presented including a novel technique to combine forward-viewing navigation and side viewing OCT. Potential applications include navigating body lumens such as the fallopian tube, biliary ducts and cardiovascular system. A custom cover plate provides a rotationally symmetric double reflection of the OCT beam to deviate and focus the OCT beam out the side of the endoscope for cross-sectional imaging of the tubal lumen. Considerations in the choice of the scanning fiber are explored and a new technique to increase the divergence angle of the scanning fiber to improve system performance is presented. Resolution and the necessary scanning density requirements to achieve Nyquist sampling of the full image are considered. The novel optical design lays the groundwork for a new approach integrating side-viewing OCT into multimodality endoscopes for small lumen imaging.

Experiments using electrical resistivity tomography (ERT) have shown promising results in reducing the uncertainty of solute plume characteristics related to estimates based on the analysis of local point measurements only. To explore the similarities and differences between two cross-borehole ERT inversion approaches for characterizing salt tracer plumes, namely the classical smoothness-constrained inversion and a geostatistically based approach, we performed two-dimensional synthetic experiments. Simplifying assumptions about the solute transport model and the electrical forward and inverse model allowed us to study the sensitivity of the ERT inversion approaches towards a variety of basic conditions, including the number of boreholes, measurement schemes, contrast between the plume and background electrical conductivity, use of a priori knowledge, and point conditioning. The results show that geostatistically based and smoothness-constrained inversions of electrical resistance data yield plume characteristics of similar quality, which can be further improved when point measurements are incorporated and advantageous measurement schemes are chosen. As expected, an increased number of boreholes included in the ERT measurement layout can highly improve the quality of inferred plume characteristics, while in this case the benefits of point conditioning and advantageous measurement schemes diminish. Both ERT inversion approaches are similarly sensitive to the noise level of the data and the contrast between the solute plume and background electrical conductivity, and robust with regard to biased input parameters, such as mean concentration, variance, and correlation length of the plume. Although sophisticated inversion schemes have recently become available, in which flow and transport as well as electrical forward models are coupled, these schemes effectively rely on a relatively simple geometrical parameterization of the hydrogeological model. Therefore, we believe that standard uncoupled ERT inverse approaches, like the ones discussed and assessed in this paper, will continue to be important to the imaging and characterization of solute plumes in many real-world applications. (C) 2016 Hohai University. Production and hosting by Elsevier B.V.

The aim of this work was studying of the coordination properties of TACN macrocyclic derivatives with aminophosphinate pendant arms. Two ligands were prepared, one with two pendant arms NODPam and one with three pendant arms NOTPam. Because of degradation of ligand NODPam during its synthesis, only the ligand NOTPam was studied further. Acid-base properties of ligand and termodynamic stability of aluminium and gallium complexes were studied. Formation and disociation studies were performed with the complexes. Coordination of fluoride ions to aluminium complex was studied using ion selective fluoride electrode. Finally coordination of complex AlFx with ligand NOTPam was studied using 19F and 27Al NMR spectroscopy. Selected experiments were made also with ligand NOTA. Key words: macrocyclic complexes, positron emission tomography, phosphinic acids

La Tomographie par Émission de Positon (TEP) combinée à l'imagerie scanner est intéressante pour la planification de traitement en radiothérapie. Elle réduit la variabilité inter et intra-observateur dans la définition du volume cible et permet de visualiser les hétérogénéités biologiques. Plusieurs algorithmes de segmentation ont été proposés mais aucun ne fait consensus. Pour valider ces algorithmes, les simulations de Monte-Carlo offrent la possibilité de maîtriser la vérité terrain et l'ensemble des paramètres d'acquisition.Nous avons proposé plusieurs méthodologies d'amélioration du réalisme des simulations. Des jeux de données présentant une variabilité anatomique, une hétérogénéité tumorale réaliste et intégrant les mouvements respiratoires ont ainsi été générés.Ces données ont été utilisées dans une première étude sur la segmentation du volume cible. Plusieurs algorithmes ont été comparés dans le cadre de la planification de traitement. L'utilisation de données simulées a permis de relier la précision de la segmentation à la qualité de la couverture de la vérité terrain. Nous avons aussi étudié l'impact de la respiration sur la précision de la segmentation.L'utilisation d'un algorithme de segmentation avancé permettant de définir un sous-volume plus actif pour la prescription d'une dose hétérogène a été proposée. Plusieurs scénarios de prescription ont été comparés en terme de probabilité de contrôle tumorale (TCP) calculée sur la TEP. La variabilité de la TCP liée aux paramètres d'acquisitions a été quantifiée. L'impact du contraste et de la taille du sous-volume fut étudié. Pour finir l'apport d'un ajout de compartiments à de telles prescriptions a été analysé. / There has been an increasing interest for the use Positron Emission Tomography (PET) combined with Computed Tomography for radiotherapy treatment planning. It improves target volume delineation by reducing inter and intra-observer variability and allows visualizing biological heterogeneities. Plethoras of segmentation algorithm have been proposed but there is a lack of consensus regarding which one to use. Monte Carlo simulations are interesting to validate these algorithms since they allow creating datasets with known ground-truth and for which all acquisition parameters are controlled.We proposed several methodologies for improving the realism of simulations. Several datasets incorporating patient specific variability in terms of anatomy and activity distributions, realistic tumor shape and activity modeling and integrating the respiratory motions were created.These data were used in a first study concerning target volume definition. Several algorithms were compared for radiotherapy treatment planning. The accuracy of segmentation was related to the quality of ground-truth volume coverage. We also studied the impact of respiratory motion on segmentation accuracy.We investigated the use of an advanced segmentation method able to define high uptake sub-volumes, for heterogeneous dose prescriptions. Several scenarios of prescriptions were compares in terms of Tumor Control Probability (TCP) computed on PET images. Variability of this TCP due to acquisition parameters was quantified. The impact of contrast and size of sub-volume was studied. Finally we studied the usefulness of the addition of compartments to such heterogeneous prescriptions.

Les modèles basés sur la mécanique des milieux continus prévoient généralement une déformation à la rupture plus élevée, ainsi qu'une durée de vie en fluage beaucoup plus longue que les valeurs observées expérimentalement. Cette thèse met en évidence deux aspects de cette problématique en analysant l’endommagement à l'aide de tomographie in situ à rayons X de synchrotron et reconstruction 3D de la structure polycristalline par polissages successifs.L’endommagement en termes de fraction surfacique des cavités a été identifié dans les couches de reconstructions tomographiques perpendiculairement à l’axe de déformation. L'évolution de la fraction surfacique des cavités a été comparée avec le modèle de prédiction de Cocks et Ashby. Ce dernier surestime la durée de vie en fluage et sous-estime l’état de l’endommagement. L'importance de l'hétérogénéité initiale de l’endommagement et l’effet de localisation de l’endommagement est également souligné. L'amplitude de la plus grande fluctuation surfacique augmente de façon parabolique en fonction de la fraction surfacique moyenne.Une méthode de sectionnement sériel améliorée basée sur la profilométrie de surface a été développée. Elle permet la mesure précise de l'épaisseur du matériau enlevée localement. Les analyses ont montré que l'emplacement des cavités par rapport aux joints de grains et l’orientation cristallographique des grains au voisinage est similaire pour les échantillons déformé par différents mécanismes de fluage. La population relative des cavités de fluage présente aux joints de grains simples est supérieure à celle présente aux joints triples. Les cavités trouvées aux joints triples, cependant, sont plus grandes. / Power law creep damage is one of the most intriguing unsolved phenomena of materials science. Models based on continuum mechanics generally predict a much higher strain to failure, as well as a much longer creep lifetime than experimentally observed values. This thesis highlights two aspects of this problematic by analyzing creep damage in copper using in situ synchrotron tomography and 3D reconstruction of the damaged polycrystal structure by serial sectioning.Damage in terms of the area fraction of voids was first identified in slices of tomographic reconstructions of creep deformed copper. The local and global evolution of cavities area fraction was checked against the Cocks and Ashby model and it was found that the model overestimates creep lifetime and underestimates damage development. The importance of the initial damage heterogeneity and the role of damage localization are also emphasized. It was found that the amplitude of the largest damage fluctuation increases parabolically as a function of cavity’s mean area fraction.An improved serial sectioning method based on surface profilometry was developed, which allows the accurate measurement of the removed local material thickness. The 3D reconstructions enabled identifying the creep voids and the grains of the polycrystal. It was shown that with the exception of the void shape, the relationship between void location at a given grain boundary and crystallographic orientation of the neighbor grains is similar in samples deformed by different creep mechanisms. The relative population of creep voids is higher at simple grain boundaries than at triple junctions. Voids found at a triple boundary, however, are larger.

Le chêne sessile (Quercus petraea) est une essence majeure de la sylviculture française. Sa ramification, phénomène de mise en place des rameaux, a pour origine unique les bourgeons proventifs axillaires mis en place lors de l'élongation des pousses annuelles (PA). On distingue la ramification séquentielle (les branches séquentielles) et la ramification épicormique. L'ontogénèse des épicormiques, c'est-à-dire le passage d'un bourgeon épicormique à un rameau épicormique plus complexe tel qu'un gourmand, picot ou broussin est encore peu connue. Les rameaux laissent dans le bois des marques, les traces raméales, qui peuvent fortement déprécier la qualité du bois. Etudier l'ontogénèse des rameaux épicormiques du chêne passe par un suivi longitudinal ou une analyse rétrospective des PA, ou par une dissection de l'arbre et une observation des traces raméales. Pour s'affranchir de ces méthodologies fastidieuses nous avons utilisé la tomographie à rayons X qui permet une étude exhaustive de toutes les traces raméales d'un billon, de leur ontogénèse ainsi que la reconstruction du billon en 3D. Les études menées au cours de cette thèse ont permis de mettre en évidence un important effet de l'arbre qui confère à chacun d'entre eux sa propre capacité à mettre en place et maintenir des épicormiques. Plus un arbre présente d'épicormiques dans son jeune âge, plus il en présentera quelques années plus tard. Cette tendance est modulée par la sylviculture actuelle, comme le maintien d'une végétation d'accompagnement qui joue sur les réserves en eau et carbohydrates de l'arbre, et la sylviculture passée, notamment les éclaircies fortes ayant favorisé les émissions de gourmands. Cependant la sélection précoce des arbres objectifs présentant le moins de formations épicormiques est une recommandation sylvicole de première importance dans le but de produire davantage de bois d'œuvre de la meilleure qualité possible. Une stratégie d'intégration de ces résultats dans le simulateur de croissance Fagacée est proposée. / Sessile oak (Quercus petraea) is a major tree species of the French forestry. Its branching, i.e. the phenomenon of twigs implementation, has a unique origin: the proventitious axillary buds set during the annual shoot (AS) elongation. We distinguish the sequential branching and the epicormic branching. Epicormic ontogeny, i.e. transition from a bud to a more complex epicormic twig as an epicormic shoot, a picot or a burl is still little known. The mark left by these twigs in the wood, the rameal trace, can depreciate its commercial value. The study of the epicormic twigs ontogeny is possible with a longitudinal follow-up or a retrospective analysis of an AS, or a dissection of the tree and an observation of the rameal traces. To free ourselves from these tedious methodologies, we used RX computed tomography which allows an exhaustive survey of all the rameal traces of a log, their ontogeny as well as the 3D reconstruction of the log. This PhD allowed to show the important effect of the tree which confers on each one its capacity to set up and maintain epicormics. The more numerous the epicormics were at young stage, the more numerous the epicormics are several years later. This trend is modulated by the actual forest operations, as the maintaining of an accompanying vegetation which play on water and carbohydrates reserve; and by past forest operation as epicormic shoot emission favoured by strong thinning. Nevertheless, the early selection of the crop trees with the few epicormic formations is a silvicultural advice of first importance in order to produce more timber wood of the best quality. A strategy of inclusion of these results in the growth simulator “Fagacées” is proposed.

This document deals with the pre-processing and the segmentation of human vertebrae from computed tomography 3D image data. It describes image registration and segmentation methods concretely and commonly used in image data processing during the automated spine canal localization process and the localization of each vertebrae centroid. The 3D deformable model development is described in the work together with the introduction to the previous state of art and the progress of vertebrae segmentation using 3D deformable models registration. This work presents the evaluation of the accuracy and the reliability from the segmentation and localization results.