The complex interactions at the interfaces of minerals, microbes, and metals drive the cycling of iron and the fate and transport of metal(loid)s in contaminated systems. The former uranium mine near Ronneburg, Germany is one such system, where slightly acidic mine drainage crossing a steep redox gradient (groundwater outflow into a stream) forms and transforms iron (oxy)hydroxide nanoparticles. These particles interact with toxic metal(loid)s in water and sediments. Iron oxidizing and reducing bacteria also play a role in these processes. Biogeochemical reactions are influenced by nanoscale properties, and thus it is critical to probe environmental samples with appropriate techniques such as analytical transmission electron microscopy (TEM). This dissertation presents two studies on the iron (oxy)hydroxide mineral nanoparticles found in the Ronneburg mine drainage system. The first study uses TEM in conjunction with bulk analytical techniques to demonstrate the complexity of iron (oxy)hydroxide transformations at the steep redox gradient, and the partitioning of metal(loid)s within those mineral phases. An important result was the identification of Zn-bearing green rust platelets in the anoxic outflow water. Green rust minerals have only been identified in nature a handful of times, and we believe this work to be only the second to examine naturally occurring green rust using high resolution TEM (HR-TEM). Downstream of the outflow, aggregates of poorly crystalline iron oxide spheroids co-precipitated with amorphous silica formed and settled to the stream bed, where they aged to form nanoparticulate goethite and sequestered metals such as As and Zn. However, significant concentrations of Zn and Ni remained in the dissolved/nano (< 0.1 um) water fraction and continued downstream. The second study demonstrates that natural green rust nanoparticles and their synthetic analogs can be complex polycrystalline phases composed of crystallites only a few nanometers in size, and often include nano-regions of amorphous material. In addition to the typical pseudo-hexagonal platelet morphology, green rust nanorods were synthesized, which has not previously been reported. This work has important implications for the reactivity of green rust with biogeochemical interfaces in natural, anthropogenic, and industrial systems. A third study, presented in the appendix, characterizes the bacterial community at the Ronneburg mine drainage site and highlights iron oxidizers such as Gallionella sp., in particular those that form stalks of iron oxide nanoparticles. These biogenic stalks also contribute to the uptake of metal contaminants in water and sediments. The science of iron cycling is complex. It requires field-based exploration to enrich the contributions made by experimental, laboratory and modeling studies. This dissertation adds another chapter in the search for filling in missing pieces of this interconnected system. / Ph. D.

Lithium-ion batteries have become a vital part of our modern life and play an essential role in electric vehicle development. One of the most feasible strategies to enhance the energy density of Li-ion batteries is to use layered, Ni-rich cathode materials. However, higher nickel content causes several problems and therefore, several methods, including doping and coating, have been utilized to stabilize their structure and boost their performance. This thesis aims to understand the microstructure of such engineered complex cathodes and provide valuable contributions by comprehensively understanding and establishing a link between the composition, structure, performance, and properties of these complex materials. In this regard, the most advanced electron- and photon-based techniques have been used to uncover the fundamental underlying reasons for the enhanced performance or degradation in these complex cathode structures. This study shows that introducing W cation inside the LiNiO2 results in new W-variants with a heterogeneous concentration on the top surface and through grain boundaries of the host secondary particles. These W-rich regions play a reinforcing role in grain boundaries and protect the outer surface of LiNiO2 particles. However, synthesis defects, such as porosities, could reduce these benefits by increasing the electrolyte infiltration inside the cathode particles. It is also demonstrated that the degradation process can be studied through the changes in electron energy loss near-edge structure spectra. The investigation of a coating approach on LiNi0.8Co0.15Al0.05O2 materials through the mechanofusion process illustrates more microscopic-scale details regarding the thickness unevenness of the coating and some degree of physical intermixing between the core (LiNi0.8Co0.15Al0.05O2) and coating (LiFePO4 and alumina) precursors. In addition to good physical contact between the core and coating materials, further analysis at higher resolution reveals some nanoscale grains and defective areas near the top surface of the secondary particles following the mechanofusion coating process. / Thesis / Doctor of Philosophy (PhD)

The pursuit of high quality, large area graphene has been a major research focus of contemporary materials science research, in the wake of the discovery of the multitude of exceptional properties exhibited by the material. The DPhil project was undertaken with the objective of developing an understanding of the growth of large graphene sheets by chemical vapour deposition (CVD), and also in the subsequent characterisation of their material properties. By conducting atmospheric pressure CVD growth at high methane flow rates, it was found that few-layered graphene (FLG) could be deposited on a copper catalyst. It is demonstrated that the self-limiting property of a copper catalyst is not universal to all deposition conditions, and shown that FLG grows in a terrace-like configuration. In depth transmission electron microscopy (TEM) studies were carried out on FLG. By selective image reconstruction from the inverse power spectrum of the TEM images, it was possible to elucidate the inter-grain connectivity of few-layer graphenes. It was determined that there were two possible inter-grain configurations possible; specifically an overlap of graphene layers or a discrete atomic bonding edge. The perturbation of the few-layer structure when subject to an out of plane distortion was found to incur a shift in the conventional AB-Bernal stacking of FLG. By utilising the aberration corrected TEM (AC-TEM) at Oxford it was possible to resolve atomic detail in CVD synthesised monolayer films, including atomic bond rotations and vacancies. The use of a high current density at low accelerating voltage (80 kV) was demonstrated to allow for the controlled defect creation in graphene sheets. This permitted the creation of monovacancies and iron doped vacancy complexes suitable for further study. The behaviour of these two defect types under electron beam irradiation was subsequently studied.

Three-dimensional porous single crystals (PSCs) are a recent development in the growing world of mesoporous material. The mesoporosity allows for the material to retain their nanoproperties whilst being bulk in size. The current work concentrates on chromium oxide and cobalt oxide PSCs formed in the templates SBA-15 and KIT-6. HRTEM is the main technique used in this investigation, looking at the morphology and single crystallinity of these materials. A growth mechanism for the PSC material is proposed based on HRTEM observations. XRD studies revealed that the confinement effect, caused by the mesopores, reduces the temperature for both cobalt and chromium oxide crystallisation, as well as a different intermediate route from the metal nitrates. The properties of chromium oxide PSC are also investigated magnetically and catalytically. Some metal oxides in different templates are also presented, despite no PSC forming. HRTEM work on other nanomaterials, based on collaboration, is also presented.

M.Tech. (Department of Chemistry, Faculty of Applied Sciences), Vaal University of Technology / Many oxidic iron compounds—iron oxides; oxy-hydroxides and hydroxides—not only play an important role in a variety of disciplines but also serve as a model system of reduction and catalytic reactions. There are more than 16 identifiable oxidic iron compounds. The reduction of these compounds has been investigated for centuries. Despite this, the reduction behavior of the oxides is not fully understood as yet. To date the reduction mechanism is still plagued with uncertainties and conflicting theories, partly due to the complex nature of these oxides and intermediates formed during the reduction. Thermodynamically, the reduction of iron oxide occurs in steps. For example, during the reduction of hematite (a-Fe2O3) magnetite (Fe3O4) is first formed followed by non-stoichiometric wüstite (Fe1-yO) and lastly metallic iron (a-Fe). The rate of transformation depends on the reduction conditions. Further, this reduction is accompanied by changes in the crystal structure. The reduction behavior of iron oxides using graphite under ball-milling conditions was investigated using Planetary mono mill (Fritsch Pulverisette 6), Mössbauer Spectroscopy (MS), X-ray Diffraction (XRD), Scanning electron microscopy (SEM) and Transmission Electron Microscopy (TEM). It was found that hematite transformed into magnetite, Wüstite and or cementite depending on the milling conditions. The study shows that by increasing the milling time, the rotational speed and / or the ball to powder ratio, the extent of the conversion of hematite to its reduction products increased. Further investigations are required for the elucidation of the reduction mechanism. The reaction og magnetite and graphite at different milling conditions lead to the formation of Fe2+ and Fe3+ species, the former increasing at the expense of Fe3O4. Fe3O4 completely disappeared after a BPR of 50:1 and beyond. The Fe2+ species was confirmed to be due to FeO using XRD analysis. HRSEM images Fe2O3 using scanning electron microscopy prior to and after milling at different times showed significant changes while the milling period was increased, HRSEM images showed that the once well defined hematite particles took ill-defined shapes and also became smaller in size, which was a results of the milling action that induced reaction between the two powders to form magnetite. EDX spectra at different milling times also confirmed formation of magnetite. EDX elemental analysis and quantification confirmed the elemental composition of starting material consisting mainly of iron. Similarly, HRSEM images of Fe3O4 using Scanning electron microscopy (SEM) prior to and after milling at different BPR showed significant changes when the milling period was increased. EDX spectra at different milling times also confirmed formation of partial FeO and EDX elemental analysis and quantification confirmed the elemental composition of starting material consisting mainly of iron than Fe2O3. TEM images of both Fe2O3 and Fe3O4 particles at different milling conditions displayed observable particle damages as a function of milling period.The once well - defined particles (Fe2O3 and Fe3O4 ) successively took ill – defined shapes, possibly accompanied by crystallite size reduction. MAS showed that the reactive milling of α- Fe2O3 and C resulted in reduction to Fe3O4 , FeO and or cementite depending on the milling conditions etc Time, milling speed and BPR variation which influenced the reduction. The study shows that by increasing the milling time, the rotational speed and / or the ball to powder ratio, the extent of the conversion of hematite to its reduction products increased. XRD study investigations even though were unable to detect spm species (Fe2+ and Fe3+ ) which has smaller crystallites below detection limits ,the variation in time showed an increment in the magnetite peaks accompanied by recession of hematite and graphite peaks as the milling time was increased which relates to the MAS observation.XRD also corroborated the data obtained from MAS that showed that the main constituent was magnetite and further evidence in support of the reduction of hematite to magnetite under reactive milling was obtained using XRD . Overall, the work demonstrated selective reduction of Fe2O3 to Fe3O4 and Fe3O4 to FeO by fine tuning the milling conditions. It is envisaged that the reduction of FeO to Fe and possible carburization to FexC could also be achieved.

In this project, the TMP method was employed to produce “active sites.” These active sites are for influencing and controlling the Co₃O₄ growth. One of the aims was to investigate what effect the grafting of the molecular precursor has on the nature and distribution of active sites on the various support materials. The second aim was to investigate the effect an increase in molecular precursor loading, in various impregnation steps, has on the nature and distribution of the active sites. The third aim was to investigate the effect of the steric constraints of ligand groups, by changing the molecular precursor, on the nature and distribution of active sites. The fourth aim was to use the different aspects discussed above and apply them to investigate what effect the above-mentioned modifications have on Co₃O₄ morphology. While another aim was to investigated what effect varying the quantity of Co(NO₃)₂•6H₂O has on Co₃O₄ morphology. Lastly, we investigated what effect varying the impregnation procedure and calcination temperature have on the Co₃O₄ morphology. The effect the support has on the phase of titanium molecular precursor was investigated using molecular precursor, ⁱPrOTi[OSi(O[superscript(t)]Bu₃)]₃. The supports used were Silica 922, NanoDur, Aerosil 200, Stöber spherical silica, SBA-15, mod MCM-41 and sMCM-41. The molecular precursor ⁱPrOTi[OSi(O[superscript(t)]Bu₃)]₃ was revealed to be in the orthorhombic TiO₂ with space group P(cab), normal brookite lattice, on Silica 922 after calcination but only an isolated area displaying this morphology. Generally we do not observe any TiO₂ on the support, which indicates that we have produce site-isolated sites, suggesting the TMP method has been successful on all of the various supports. The emphasis is placed on the effect of this molecular precursor and the respective support has on the Co₃O₄ morphology in Chapter 3. In this Chapter, a unique morphology was observed on Silica 922 which showed Co₃O₄ nanorods of cubic Co₃O₄ in the space group Fd-3m. Silica 922 was used for the remainder of the thesis to investigate the effect the quantity of molecular precursor has on the nature of active sites and Co₃O₄ morphology in Chapter 4. This support was also used to investigate the effect the amount of Co(NO₃)₂•6H₂O has on Co₃O₄ morphology in Chapter 5. This support was lastly used to investigate the steric constraints of the ligand groups, Ti[OSi(O[superscript(t)]Bu)₃]₄ (TiSi4), ⁱPrOTi[OSi(O[superscript(t)]Bu)₃]₃ (TiSi3), (OtBu)₃TiOSi(O[superscript(t)]Bu)₃ (TiSi) and the least sterically constrained Ti(OⁱPr)₄ has on the loading of precursor and Co₃O₄ morphology in Chapter 6.

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De nombreux alliages de structure doivent leurs propriétés mécaniques à la présence de précipités inter ou intragranulaires. Ainsi les superalliages à base nickel, de matrice austénique γ, sont souvent renforcés par des précipités de phases intermétalliques ordonnées. Au sein de l’alliage Inconel 718, outre la phase γ’ de structure L12 (cubique simple), on trouve des précipités de Ni3Nb sous la forme métastable γ" (D022 - tétragonal centré) ou sous la forme stable δ (D0a - orthorhombique). Le rôle des précipités γ’, γ" et δ sur les propriétés macroscopiques de l'alliage est connu et largement utilisé en contexte industriel. Cependant les mécanismes de précipitation et de transformation de ces précipités ne sont toujours pas complètement élucidés, ce qui a motivé ce travail. La microstructure de l’alliage a été caractérisée par microscopie optique (MO) et électronique (à balayage et en transmission ; MEB et MET) dans l’état de livraison et après des traitements thermiques isothermes et anisothermes. Les essais d’analyse thermique différentielle (ATD) nous ont permis de préciser les domaines de température de précipitation et de dissolution des différentes phases présentes (γ’, γ" et δ). Différents états de précipitation ont été obtenus à l’aide de traitements thermiques isothermes basés sur les diagrammes temps-températuretransformation (T.T.T.) disponibles dans la littérature. Les observations en MET « à haute résolution » des précipités des phases δ et γ’’ ont permis de caractériser certains des défauts structuraux présents dans ces précipités. Nous montrons ainsi que les défauts d’empilement au sein de la phase γ’’ peuvent servir de germes pour la précipitation de . Alors que la structure des interfaces δ/γ ainsi que les défauts d’orientation au sein des lamelles de δ suggèrent que la croissance de la phase δ a lieu directement à partir de la matrice . / Many structural alloys are strengthened by the presence of precipitates in the grains or at grain boundaries. Nickel based superalloys often present an austenitic γ matrix in which ordered intermetallic phases precipitate. In the alloy Inconel 718, one can find γ’ L12 cubic ordered precipitates together with the compound Ni3Nb in its metastable form γ" (D022 - tetragonal) or the stable phase δ (D0a - orthorhombic). The incidence of those precipitates on macroscopic properties of the alloy 718 is well known and widely used in industrial applications. However the mechanisms responsible for the precipitation and transformation of these phases are not fully understood, which motivated the present study. The alloy microstructure has been observed by optical microscopy (OM) and electron microscopy (scanning and transmission, SEM and TEM) in the as received state as well as after heat treatment (isothermal and anisothermal). Differential thermal analysis (DTA) was used to determine the precipitation and dissolution temperatures of the phases γ', γ" and δ. Various precipitation microstructures were obtained by heat treatments based on available TTT diagrams. Some of the structural defects present in γ" and δ precipitates have been characterised by lattice imaging TEM observations. It is shown that stacking faults in γ’’ phase can act as a seed for the germination of . The structure of the δ/γ interface and the orientation defects in δ lamellae suggest that the growth of δ phase occurs directly from the matrix (and not by transformation of the γ’’ phase).

A large number of proteins interact with biological membranes, either integrated in the membrane (PepTSo2), embedded on a membrane surface (5-lipoxygenase) or encircling a cutout of lipid bilayer (apolipoprotein1 (apoA-I). They function as transporters, receptors or biocatalysts in cellular processes like inflammation or cholesterol transport which are touched upon here. Malfunction of specific membrane proteins are the cause for several diseases or disorders. Knowledge of protein structure supports understanding of its mechanism of function. Here, transmission electron microscopy (TEM) was used for structure determination. To obtain structure information to high resolution for membrane proteins, normally surrounded by lipids, demands specific methods and materials for stabilization. Stabilized in detergent the structure of the bacterial transporter PepTSo2 was shown to form a tetramer even bound to substrate. However, with a protein based stabilizer, Salipro, the structure of PepTSo2 could be determined to high resolution. High density lipoprotein (HDL) in blood plasma, involved in the removal of cholesterol from peripheral tissues, have a central role in cardiovascular function, metabolic syndrome and diabetes. The HDL-particle is composed of two copies of ApoA1 and around hundred lipid molecules. From TEM data, for the first time the clearly discoidal shape could be shown by 3-dimendional reconstructions. These were used for modelling the ApoA1 protein dimer by a "biased fitting" procedure. The results indicate how ApoA1 folds around a lipid bilayer in a disc-shaped structure. Modified HDL called nanodiscs were here used to show the Ca2+ dependent binding of 5-lipoxygenase on the nanodisc bilayer and thereby increased production of the inflammatory mediator leukotrieneA4. Dimerization of 5-lipoxygenase inactivates these functions. / <p>QC 20170323</p>