No / Gas chromatography (GC), GC-mass spectrometry (GC-MS) and GC-combustion-isotope ratio MS (GC-C-IRMS) analyses of absorbed and surface lipid residues preserved in potsherds were used to explore the extent of pig product processing exploitation in the later British Neolithic Grooved Ware tradition. Assessments were made regarding whether porcine lipids were associated with specific Grooved Ware traits, i.e. decoration, substyle, geographical area and type of site. Two hundred and twenty-two Grooved Ware potsherds were analysed, 70% of which contained lipid concentrations considered significant (>5 μg g−1). All the lipid residues were dominated by animal fats, although plant and beeswax were also detected in a small number of extracts. δ13C values of the major fatty acid components of degraded animal fats (C16:0 and C18:0) were determined for 126 extracts and used to assign ruminant or porcine origins to the residues; 16% of these were found to have a predominantly porcine isotope signature. Statistical associations with pig exploitation were shown to exist with substyle, geographical area and site type, whereas, no relationship was seen between decoration and the type of commodity processed. Intact triacylglycerols were preserved in 19% of the sherds; half of these had distributions consistent with the identifications based on δ13C values, the remainder differed either due to the presence of mixed commodities or because lower molecular weight homologues had been lost due to degradation. In addition to the detection of pig exploitation, results from lipid residue analysis showed a good correlation with faunal assemblages, suggesting that stable isotope analysis may be used as a proxy for animal exploitation at sites where bones have not survived.

O objetivo do presente estudo foi medir experimentalmente a solubilidade do óleo de café verde em dióxido de carbono supercrítico em condições preestabelecidas de pressão (P) e temperatura (T), e a partir dos dados experimentais estabelecer ajustes em modelos termodinâmicos que empregam a equação de estado (EDE) de Peng-Robinson com a regra de mistura clássica de van der Waals para predição do equilíbrio de fases. Foi obtido óleo a partir de grãos de café verde (Coffea arabica), cultivar (cv.) Catuaí Amarelo moído (dm de 0,8409 mm) usando CO2 supercrítico, nas condições de 40, 50, 60, 70, 80 °C e nas pressões de 300 e 350 bar. A solubilidade foi medida pelos métodos dinâmico e estático nas mesmas condições. Foi determinado o perfil de ácidos graxos por cromatografia gasosa acoplada à espectrometria de massas (CG/EM) e, a partir destes resultados, a composição em triacilgliceróis (TAGs) foi estimada. Foram determinadas as propriedades físico-químicas dos TAGs pelo método de contribuição de grupos. Nas condições de P e T estudadas, os maiores rendimentos do óleo de grãos de café verde, 7,58% e 7,60%, foram obtidos nas condições de 70 °C e 300 bar e 80 °C e 350 bar, respectivamente. Normalmente o rendimento do óleo aumentou com o aumento da temperatura, com exceção das condições de 80 °C e 300 bar e 70 °C e 350 bar. O aumento do rendimento com a temperatura reflete nos dados experimentais da solubilidade (0,0099 a 0,026 g/gCO2) que aumentou com a temperatura a 300 e 350 bar para o método estático e para o método dinâmico a 350 bar (0,0058 a 0,0065 g/gCO2). Um comportamento distinto ocorreu com a medida de solubilidade pelo método dinâmico a 300 bar. Neste caso a solubilidade diminuiu com o aumento da temperatura. Para a maioria das condições de P e T estudadas, o comportamento da solubilidade foi semelhante em função destas variáveis, o mesmo para os métodos estático e dinâmico, no entanto com ordens de grandezas distintas. As condições de extração não influenciaram na composição dos ácidos graxos no óleo nem na predição dos TAGs presentes. Os TAGs apresentaram variações entre número de carbonos (C50 a C58). As propriedades físico-químicas dos seis principais TAGs presentes no óleo de grãos de café verde (PSL, PLL, PLP, PLO, PLA e POP), temperatura do ponto de ebulição normal (Tb), temperatura crítica (Tc), pressão crítica (Pc) e fator acêntrico (ω) foram estimadas por métodos de contribuição de grupos. Estas variáveis são dados de entrada para a predição do equilíbrio de fases entre o óleo de grãos de café verde, representado pela mistura dos seis TAGs em maior concentração neste óleo, e o CO2 supercrítico. Os valores de Tb dos TAGs variaram de 821,52 a 844,50 K, os valores de Tc de 909,12 a 930,02 K, os valores de Pc de 5,0115 a 4,7221 bar e o ω de 1,5704 a 1,7452. Os dados de propriedades físicas e da solubilidade convertida em fração molar foram usados para predizer os parâmetros de interação binária da regra de mistura clássica de van der Waals entre cada TAG e o CO2 supercrítico, já que estes parâmetros também são dados de entrada para a modelagem termodinâmica que emprega a EDE de Peng-Robinson. No entanto, o programa não rodou, não sendo possível este cálculo, nem tão pouco a predição do equilíbrio de fases. Os dados experimentais da solubilidade do óleo de grãos de café verde em CO2 supercrítico determinados pelos métodos estático e dinâmico indicou que àqueles determinados pelo método estático são mais precisos e confiáveis. / The objective of this study was to experimentally measure the solubility of green coffee oil in supercritical carbon dioxide under predetermined pressure (P) and temperature (T) conditions and, from the experimental data, establish thermodynamic models that use the Peng-Robinson equation of state (EOS) and the classic mixing rule of van der Waals to predict phase equilibrium. The oil was obtained from ground green coffee beans (Coffea arabica L.) cultivar (cv.) Yellow Catuaí (dm of 0.8409 mm) using supercritical CO2 under temperatures of 40, 50, 60, 70 and 80 °C and pressures of 300 and 350 bar. The solubility was measured by dynamic and static methods under the same conditions. The fatty acid profile was determined by gas chromatography-mass spectrometry (GC/MS) and, from these results, the composition of triacylglycerols (TAGs) was estimated. Physicochemical properties of TAGs were determined by the group contribution method. In the studied conditions of P and T, higher yields of green coffee beans oil, 7.58% and 7.60%, were obtained at 70 °C and 300 bar and 80 °C and 350 bar, respectively. Normally, the oil yield increased with increasing temperatures, except for the conditions of 80 °C and 300 bar and 70 °C and 350 bar. The increase of yield with temperature reflects in the experimental solubility data (from 0.0099 to 0.026 g/g CO2), which, also increased with T at 300 and 350 bar for the static method and, for the dynamic method, at 350 bar (from 0.0058 to 0.0065 g/g CO2). A different behavior occurred with the solubility measured by dynamic method at 300 bar. In this case, the solubility decreased with increasing temperature. For most of the P and T conditions studied, the solubility behavior was similar in function of these variables, the same for static and dynamic methods, but with different magnitude orders. The extraction conditions did not affect the composition of fatty acids in the oil and nor the TAGs prediction. The TAGs showed variations between carbon numbers (from C50 to C58). The physicochemical properties of the six major TAGs present in green coffee bean oil (PSL, PLL, PLP, PLO, PLA and POP), boiling temperature (Tb), critical temperature (Tc), critical pressure (Pc) and acentric factor (ω) were estimated by group contribution methods. These are input variables for the prediction for the phase equilibrium between the green coffee oil, represented by the mixture of the six TAGs in higher concentration in this oil, and supercritical CO2. The Tb values of TAG ranged from 821.52 to 844.50 K, Tc values from 909.12 to 930.02 K, Pc values from 5.0115 to 4.7221 bar and ω from 1, 5704 to 1.7452. The data of physical properties and solubility converted to mole fraction were used to predict the binary interaction parameters of the classic mixing rule of van der Waals between each TAG and supercritical CO2, since these are also input parameters for the thermodynamic modeling that use Peng-Robinson EOS. However, the program did not run and this calculation was not possible, nor the prediction for the phase equilibrium. The experimental data on the solubility of the green coffee beans oil in supercritical CO2 determined by static and dynamic methods indicated that those determined by the static method are more accurate and reliable.

Les bétaïne lipides (BL) sont des lipides polaires qui se distinguent des phospholipides (PL)par l’absence de phosphore (P). La réorientation métabolique induite par une limitation en P chez des microalgues produisant des BL (Tisochrysis lutea et Diacronema lutheri, Haptophytes) ou en produisant peu (Phaeodactylum tricornutum, Bacillariophyte) a été comparée à celle induite par une limitation en azote (N). Le devenir et le flux de carbone dans différentes voies de biosynthèse ont été étudiés par une approche pluridisciplinaire.La limitation nutritive en P ou en N affecte différemment le métabolisme du carbone selon les espèces microalgales. La limitation en P réduit fortement l’activité photosynthétique et la respiration chez P. tricornutum et T. lutea. Par conséquent, l’accumulation de carbone est plus élevée que sous limitation en N chez ces deux espèces. Les deux limitations stimulent en particulier la synthèse des lipides neutres et / ou des glucides. Le remplacement des PL par les BL a été observé chez P. tricornutum en condition de limitation en P. Ce résultat est en accord avec une augmentation de la transcription du gène codant la bétaïne lipide synthase. En revanche, cette limitation ne modifie pas les teneurs en BL rapportées au carbone chez T. lutea et D. lutheri. La composition en acides gras des différentes classes lipidiques est modifiée selon l’espèce microalgale et l’élément nutritif limitant. Une attention particulière a été portée aux acides gras de la série oméga-3, notamment l’acide eicosapentaénoïque (EPA, 20:5 ω3) et l’acide docosahexaénoïque (DHA, 22:6 ω3) dont les proportions varient en fonction de l’élément limitant,de l’espèce et de la classe lipidique. L’augmentation de la production des lipides neutres et / ou des lipides polaires, notamment des bétaïne lipides, riches en DHA et/ou EPA induite par un stress nutritif laisse envisager une valorisation de ces molécules d’intérêt dans différents domaines dont la nutrition et la santé. / Betaine lipids (BL) are P-free polar lipids, conversely to phospholipids (PL). The metabolic reorientation induced by phosphorus (P) limitation in microalgae producing BL (Tisochrysis lutea and Diacronema lutheri, Haptophyta) or producing low levels of BL (Phaeodactylum tricornutum, Bacillariophyta) was compared to that induced by nitrogen (N) limitation. The carbon destiny and flow in different biosynthetic pathways were studied with a multidisciplinary approach. P or N limitation differently affected carbon metabolism according to microalgal species. P limitation highly decreased photosynthetic activity and respiration of P. tricornutum and T. lutea. Consequently, carbon accumulation was higher than under N limitation in these two species. Both limitations stimulated the synthesis of neutral lipids and / or carbohydrates. Replacement of PL by BL was observed in P. tricornutum under P limitation. This result is in agreement with a transcription increase of the gene encoding BL synthase. On the other hand, this limitation did not modify BL contents in reference with carbon in T. lutea or D. lutheri. Fatty acid composition of the different lipid classes was modified according to the microalgal species and the limiting nutrient. Particular attention was paid to the fatty acids of the omega-3 series, notably eicosapentaenoic acid (EPA, 20:5 ω3) and docosahexaenoic acid (DHA, 22:6 ω3), the proportions of which vary according to the limiting element, species and lipid class. The increase in the production of neutral lipids and / or polar lipids, especially betaine lipids, rich in DHA and / or EPA induced by nutritive stress suggests a valorization of these molecules of interest in various areas including nutrition and health.

O objetivo do presente estudo foi medir experimentalmente a solubilidade do óleo de café verde em dióxido de carbono supercrítico em condições preestabelecidas de pressão (P) e temperatura (T), e a partir dos dados experimentais estabelecer ajustes em modelos termodinâmicos que empregam a equação de estado (EDE) de Peng-Robinson com a regra de mistura clássica de van der Waals para predição do equilíbrio de fases. Foi obtido óleo a partir de grãos de café verde (Coffea arabica), cultivar (cv.) Catuaí Amarelo moído (dm de 0,8409 mm) usando CO2 supercrítico, nas condições de 40, 50, 60, 70, 80 °C e nas pressões de 300 e 350 bar. A solubilidade foi medida pelos métodos dinâmico e estático nas mesmas condições. Foi determinado o perfil de ácidos graxos por cromatografia gasosa acoplada à espectrometria de massas (CG/EM) e, a partir destes resultados, a composição em triacilgliceróis (TAGs) foi estimada. Foram determinadas as propriedades físico-químicas dos TAGs pelo método de contribuição de grupos. Nas condições de P e T estudadas, os maiores rendimentos do óleo de grãos de café verde, 7,58% e 7,60%, foram obtidos nas condições de 70 °C e 300 bar e 80 °C e 350 bar, respectivamente. Normalmente o rendimento do óleo aumentou com o aumento da temperatura, com exceção das condições de 80 °C e 300 bar e 70 °C e 350 bar. O aumento do rendimento com a temperatura reflete nos dados experimentais da solubilidade (0,0099 a 0,026 g/gCO2) que aumentou com a temperatura a 300 e 350 bar para o método estático e para o método dinâmico a 350 bar (0,0058 a 0,0065 g/gCO2). Um comportamento distinto ocorreu com a medida de solubilidade pelo método dinâmico a 300 bar. Neste caso a solubilidade diminuiu com o aumento da temperatura. Para a maioria das condições de P e T estudadas, o comportamento da solubilidade foi semelhante em função destas variáveis, o mesmo para os métodos estático e dinâmico, no entanto com ordens de grandezas distintas. As condições de extração não influenciaram na composição dos ácidos graxos no óleo nem na predição dos TAGs presentes. Os TAGs apresentaram variações entre número de carbonos (C50 a C58). As propriedades físico-químicas dos seis principais TAGs presentes no óleo de grãos de café verde (PSL, PLL, PLP, PLO, PLA e POP), temperatura do ponto de ebulição normal (Tb), temperatura crítica (Tc), pressão crítica (Pc) e fator acêntrico (ω) foram estimadas por métodos de contribuição de grupos. Estas variáveis são dados de entrada para a predição do equilíbrio de fases entre o óleo de grãos de café verde, representado pela mistura dos seis TAGs em maior concentração neste óleo, e o CO2 supercrítico. Os valores de Tb dos TAGs variaram de 821,52 a 844,50 K, os valores de Tc de 909,12 a 930,02 K, os valores de Pc de 5,0115 a 4,7221 bar e o ω de 1,5704 a 1,7452. Os dados de propriedades físicas e da solubilidade convertida em fração molar foram usados para predizer os parâmetros de interação binária da regra de mistura clássica de van der Waals entre cada TAG e o CO2 supercrítico, já que estes parâmetros também são dados de entrada para a modelagem termodinâmica que emprega a EDE de Peng-Robinson. No entanto, o programa não rodou, não sendo possível este cálculo, nem tão pouco a predição do equilíbrio de fases. Os dados experimentais da solubilidade do óleo de grãos de café verde em CO2 supercrítico determinados pelos métodos estático e dinâmico indicou que àqueles determinados pelo método estático são mais precisos e confiáveis. / The objective of this study was to experimentally measure the solubility of green coffee oil in supercritical carbon dioxide under predetermined pressure (P) and temperature (T) conditions and, from the experimental data, establish thermodynamic models that use the Peng-Robinson equation of state (EOS) and the classic mixing rule of van der Waals to predict phase equilibrium. The oil was obtained from ground green coffee beans (Coffea arabica L.) cultivar (cv.) Yellow Catuaí (dm of 0.8409 mm) using supercritical CO2 under temperatures of 40, 50, 60, 70 and 80 °C and pressures of 300 and 350 bar. The solubility was measured by dynamic and static methods under the same conditions. The fatty acid profile was determined by gas chromatography-mass spectrometry (GC/MS) and, from these results, the composition of triacylglycerols (TAGs) was estimated. Physicochemical properties of TAGs were determined by the group contribution method. In the studied conditions of P and T, higher yields of green coffee beans oil, 7.58% and 7.60%, were obtained at 70 °C and 300 bar and 80 °C and 350 bar, respectively. Normally, the oil yield increased with increasing temperatures, except for the conditions of 80 °C and 300 bar and 70 °C and 350 bar. The increase of yield with temperature reflects in the experimental solubility data (from 0.0099 to 0.026 g/g CO2), which, also increased with T at 300 and 350 bar for the static method and, for the dynamic method, at 350 bar (from 0.0058 to 0.0065 g/g CO2). A different behavior occurred with the solubility measured by dynamic method at 300 bar. In this case, the solubility decreased with increasing temperature. For most of the P and T conditions studied, the solubility behavior was similar in function of these variables, the same for static and dynamic methods, but with different magnitude orders. The extraction conditions did not affect the composition of fatty acids in the oil and nor the TAGs prediction. The TAGs showed variations between carbon numbers (from C50 to C58). The physicochemical properties of the six major TAGs present in green coffee bean oil (PSL, PLL, PLP, PLO, PLA and POP), boiling temperature (Tb), critical temperature (Tc), critical pressure (Pc) and acentric factor (ω) were estimated by group contribution methods. These are input variables for the prediction for the phase equilibrium between the green coffee oil, represented by the mixture of the six TAGs in higher concentration in this oil, and supercritical CO2. The Tb values of TAG ranged from 821.52 to 844.50 K, Tc values from 909.12 to 930.02 K, Pc values from 5.0115 to 4.7221 bar and ω from 1, 5704 to 1.7452. The data of physical properties and solubility converted to mole fraction were used to predict the binary interaction parameters of the classic mixing rule of van der Waals between each TAG and supercritical CO2, since these are also input parameters for the thermodynamic modeling that use Peng-Robinson EOS. However, the program did not run and this calculation was not possible, nor the prediction for the phase equilibrium. The experimental data on the solubility of the green coffee beans oil in supercritical CO2 determined by static and dynamic methods indicated that those determined by the static method are more accurate and reliable.

Les lipides représentent une classe essentielle de biomolécules au fonctionnement normal des organismes vivants. Étant donné leur complexité et leur très grande diversité, les analyses du lipidome combinent généralement une méthode de séparation analytique et une détection par spectrométrie de masse. Bien que ces méthodes d’analyses présentent plusieurs avantages, elles requièrent généralement une homogénéisation de l’échantillon préalablement à l’analyse. La conséquence est la perte de l’information spatiale des analytes au travers de l’échantillon. L’imagerie par spectrométrie de masse (IMS) est une technologie de pointe permettant de cartographier au niveau moléculaire des sections tissulaires minces sans homogénéisation préalable de l’échantillon. Cette technique d’analyse permet de caractériser une vaste gamme d’analyte d’intérêt sans l’utilisation de marqueurs spécifiques. Ainsi, cette cartographie moléculaire peut être combinée à des méthodes de coloration tissulaires ou de microscopie optique afin de corréler précisément les résultats obtenus avec les histologies des sections. En revanche, la délocalisation potentielle des analytes d’intérêt au travers de la section entraîne de graves erreurs d’interprétation et prévient la corrélation exacte des résultats IMS avec les régions histologiques d’intérêt. Les travaux mis en évidence dans ce mémoire présentent le développement, la caractérisation et l’utilisation d’une nouvelle lame d’analyse pour l’IMS permettant de drastiquement réduire la délocalisation des triacylglycérols (TAG) présents dans le gras viscéral. Dans un premier temps, ces travaux montrent la délocalisation des TAG sur et hors-section tissulaire ainsi que leur induction sur la migration conjointe de plusieurs classes de phospholipides (PL) dans leurs déplacements. Par la suite, l’amplitude de la délocalisation des TAG fut étudiée sur 12 types de lames différentes, et la caractérisation de la topographie et de l’hydrophobicité de ces lames à permis de mieux comprendre la relation entre la surface et l’ampleur de la délocalisation des TAG. Pour finir, le potentiel antidélocalisation d’une nouvelle lame en aluminium oxydé fut étudié avec deux tissus comprenant une large proportion de gras viscéral soit un échantillon de muscle de boeuf présentant des stries de gras internes et un rein de souris bordé de gras. Cette nouvelle lame permet une forte ségrégation des TAG comparativement aux résultats obtenus sur les lames commerciales couramment utilisées et ainsi augmenter la fidélité des analyses IMS obtenues. Cette nouvelle méthode permettra entre autres l’analyse de plusieurs organes et tissus d’intérêt très gras autrement difficile à analyser tel que le rein, la médulla surrénale, certains muscles et cancer du sein. / Lipids represent an essential class of biomolecules for the normal functioning of living organisms. Because of their high complexity and diversity, lipid analysis generally requires the combination of an analytical separation method with mass spectrometry detection. Although these methods present many advantages, they also generally require sample homogenization prior to analysis. This implies the loss of analyte spatial localization information within the sample. Imaging mass spectrometry (IMS) is a frontier technology that allows to generate molecular cartography of thin tissue sections without prior homogenization of the sample. This technique allows to characterize a vast variety of analyte without the use of any specific markers. IMS molecular cartography can be combined to staining methods for optic microscopy to precisely correlate results with the underlaying histological features. On the other hand, potential delocalization of analytes throughout the section would prevent correlation of the IMS results with any histological landmarks and lead to severe misinterpretation by an unaware analyst. The work in this master’s thesis presents the development, characterization and use of a new slide for IMS analyses allowing a drastic decrease the delocalization of triglycerides (TAG) abundant in visceral fat. In the first part of this work, TAG delocalization on and off tissue section and its effect on phospholipids (PL) delocalization was characterized. Subsequently, the extend of TAG delocalization was evaluated on 12 different slides and both surface topography and hydrophobicity studies allowed to better understand the relationship between surface chemistry and TAG delocalization. Finally, the ability of an optimal aluminum oxide slide to decrease visceral fat delocalization was investigated using fat-marbled beef sections and kidneys surrounded by significant fat bundles. This new aluminum oxide slide presents a strong segregation for TAG in comparison to commercially available ITO-coated slides. Overall, this new aluminum oxide slide can considerably limit TAG delocalization and improve IMS fidelity and will enable the analyses of multiples organs and samples presenting large amounts of fat such as kidney, adrenal medulla, muscles, and breast cancer, otherwise very difficult to analyze using traditional slides.

Lipids from the fat body of queens of Bombus terrestris species in different life stages were studied using chromatographic methods. High-performance liquid chromatography - mass spectrometry with electrospray ionization was used to analyze all lipids from the tissue. Semi- preparative thin-layer chromatography was used to isolate triacylglycerols (TGs) from the fat body tissue. The TGs were subsequently analyzed by high-performance liquid chromatography - atmospheric pressure chemical ionization mass spectrometry. Quantitative differences between different life stages have been found. Qualitative composition has not been changing significantly. Only minor differences have been found in the substances, which were present in amount less than 1%.

The gastrointestinal tract (GIT) regulates nutrient uptake, secretes hormones and has a crucial gut flora and enteric nervous system. Of relevance for these functions are the G protein-coupled receptors (GPCRs) and the solute carriers (SLCs). The Adhesion GPCR subfamily is known to mediate neural development and immune system functioning, whereas SLCs transport e.g. amino acids, fatty acids (FAs) and drugs over membranes. We aimed to comprehensively characterize Adhesion GPCR and SLC gene expression along the rat GIT. Using qPCR we measured expression of 78 SLCs as well as all 30 Adhesion GPCRs in a twelve-segment GIT model. 21 of the Adhesion GPCRs had a widespread (≥5 segments) or ubiquitous (≥11 segments) expression. Restricted expression patterns were characteristic for most group VII members. Of the SLCs, we found the majority (56 %) of these transcripts to be expressed in all GIT segments. SLCs were predominantly found in the absorption-responsible gut regions. Both Adhesion GPCRs and SLCs were widely expressed in the rat GIT, suggesting important roles. The distribution of Adhesion GPCRs defines them as a potential pharmacological target. FAs constitute an important energy source and have been implicated in the worldwide obesity increase. FAs and their ratios – indices for activities of e.g. the desaturase enzymes SCD-1 (SCD-16, 16:1n-7/16:0), D6D (18:3n-6/18:2n-6) and D5D (20:4n-6/20:3n-6) – have been associated with e.g. overall mortality and BMI. We examined whether differences in FAs and their indices in five lipid fractions contributed to obesity susceptibility in rats fed a high fat diet (HFD), and the associations of desaturase indices between lipid fractions in animals on different diets. We found that on a HFD, obesity-prone (OP) rats had a higher SCD-16 index and a lower linoleic acid (LA) proportions in subcutaneous adipose tissue (SAT) than obesity-resistant rats. Desaturase indices were significantly correlated between many of the lipid fractions. The higher SCD-16 may indicate higher SCD-1 activity in SAT in OP rats, and combined with lower LA proportions may provide novel insights into HFD-induced obesity. The associations between desaturase indices show that plasma measurements can serve as proxies for some lipid fractions, but the correlations seem to be affected by diet and weight gain.