Glioma is one of the most challenging types of brain tumors to be treated or controlled locally. One of the main problems is to determine which areas of the apparently normal brain contain glioma cells, as gliomas are known to infiltrate several centimetres beyond the clinically apparent lesion that is visualized on standard CT or MRI. To ensure that radiation treatment encompasses the whole tumor, including the cancerous cells not revealed by MRI, doctors treat the volume of brain that extends 2cm out from the margin of the visible tumor. This approach does not consider varying tumor-growth dynamics in different brain tissues, thus it may result in killing some healthy cells while leaving cancerous cells alive in other areas. These cells may cause recurrence of the tumor later in time which limits the effectiveness of the therapy. In this thesis, we propose two models to define the tumor invasion margin based on the fact that glioma cells preferentially spread along nerve fibers. The first model is an anisotropic reaction-diffusion type tumor growth model that prioritizes diffusion along nerve fibers, as given by DW-MRI data. The second proposed approach computes the tumor invasion margin using a geodesic distance defined on the Riemannian manifold of brain bers. Both mathematical models result in Partial Differential Equations (PDEs) that have to be numerically solved. Numerical methods used for solving differential equations should be chosen with great care. A part of this thesis is dedicated to discuss in detail, the numerical aspects such as stability and consistency of different finite difference methods used to solve these PDEs. We review the stability issues of several 2D methods that discretize the anisotropic diffusion equation and we propose an extension of one 2D stable method to 3D. We also analyze the stability issues of the geodesic model. In comparison, the geodesic model is numerically more stable than the anisotropic diffusion model since it results in a rst-order PDE. Finally, we evaluate both models on actual DTI data from patients with glioma by comparing our predicted growth with follow-up MRI scans. Results show improvement in predicting the invasion margin when using the geodesic distance model as opposed to the 2cm conventional Euclidean distance.

No description available.

Abstract In malignancies many alterations involving matrix macromolecule synthesis, secretion and assembly into basement membranes (BMs) as well as their degradation are present. The most important groups associated with matrix turnover are matrix metalloproteinases (MMPs) and their inhibitors (TIMPs). In this study altogether 285 tissue samples were investigated comprising various malignant epithelial tumors and normal tissue structures, in which the distribution of different laminin chains was studied immunohistochemically. Laminin α5, β1 and γ1 were detected almost in all the BMs studied including normal tissues and malignancies, whereas α1 chain of laminin was present only in certain BMs. Laminin γ2 chain was solely expressed by epithelial BMs and was present in intracellular space especially in individual carcinoma cells infiltrating in the tumor stroma and in tumor cells in close contact with BM zone. Generally epithelial tumors contained quite well-formed BMs around their tumor clusters, except for infiltrative breast carcinoma and diffuse type gastric carcinoma. In situ hybridization revealed that only epithelial cells contained mRNAs for laminin α1 and γ2 chains, whereas laminin β1 chain and α1(IV) collagen were synthesized mainly by stromal cells. mRNA for MMP-2 was produced mainly by stromal cells in hepatocellular carcinoma of liver (HCC) and pancreatic adenocarcinoma, whereas MMP-9 and MT1-MMP were equally synthesized by carcinoma cells and cells of tumor stroma. However, in HCCs of grade III carcinoma cells predominated in their MT1-MMP expression. All three MMPs were immunolocalized to malignant epithelial cells and showed variably stromal cell positivity. Statistically mRNA synthesis for MT1-MMP was significantly associated with the shortened survival of patients with HCC (P ≤ 0.01). TIMP-1-3 mRNA, and especially TIMP-3, expressions in normal endometrium were significantly increased in endometrial stromal cells towards the secretory phase. In various endometrial hyperplasias TIMPs and MT1-MMP expressions were quite comparable to those seen in proliferating endometrium. In endometrial adenocarcinomas their expressions were significantly increased and the most intensified mRNA expressions were seen in grade III adenocarcinomas. Especially TIMP-3 and MT1-MMP mRNAs were synthesized by carcinoma cells. The results indicate that epithelial malignancies are capable of active synthesis and assembly of BM macromolecules. Simultaneous matrix synthesis and degradation seen in malignancies suggest that the mechanisms involved in matrix turnover are not lost during malignant transformation. mRNA synthesis for MMPs and TIMPs is generally increased in epithelial malignancies. The results therefore strongly support the concept that MMPs have an active role in carcinoma cell invasion.

No description available.

Ampliar nosso conhecimento sobre a biologia do carcinoma espinocelular bucal é fundamental para o desenvolvimento de novas estratégias terapêuticas e para melhorar a sobrevida dos pacientes acometidos por essa patologia. Para tanto, compreender as contribuições do microambiente tumoral à carcinogênese é muito importante. Um característica importante a ser avaliada do microambiente tumoral é a acidificação do meio extracelular. Considerando que o pH ácido tumoral está relacionado à maior agressividade da lesão, o objetivo deste projeto é estudar os efeitos de um microambiente ácido na biologia de células de carcinoma espinocelular bucal. Para tanto, foram realizadas duas revisões da literatura, nas quais foram avaliados os seguintes temas: influência da acidez extracelular na invasão e migração; e os mecanismos moleculares envolvidos na resistência ao tratamento quimioterápico, induzida pela acidez do microambiente tumoral. Tais revisões embasaram a construção do terceiro artigo desta tese, o qual se propôs a comparar o comportamento de células linhagens de carcinoma espinocelular bucal (SCC-4 e SCC-9) e queratinócitos (HaCat) cultivadas em meio de cultura de pH 6.8 com células mantidas em meio neutro pH 7.4. As células foram expostas de forma contínua ou intermitente ao pH 6.8 e a adaptação das células foi avaliada pelo ensaio clonogênico. Além disso, as células foram avaliadas quanto à sua capacidade migratória pelo ensaio de cicatrização de feridas e de time lapse. A expressão gênica relacionada à indiferenciação e pluripotência foi investigada por PCR em tempo real com os marcadores Bmi-1 e CD44, assim como pelo ensaio de orosferas. A resistência desses grupos de células ao tratamento anti-câncer foi avaliada pelo ensaio de viabilidade celular da sulforodamina B após o tratamento com Cisplatina. Para a análise estatística, inicialmente foi realizada a distribuição dos dados, seguido da comparação estatística dos grupos utilizando, para distribuição normal, os testes ANOVA e ANOVA de duas vias. Toda a análise foi realizada no programa GraphPad Prism 5.0 e o nível de significância considerado foi de p< 0.05.Observamos que ambas as linhagens mudaram sua morfologia para um aspecto mesenquimal. Ao avaliar o perfil migratório observou-se que as células SCC-9 apresentaram maior capacidade de migração após a exposição ao pH6.8. O aumento da migração celular pode ser causado pela indução da transição epitélio-mesênquima, visto que observamos o aumento da expressão de N-caderina (SCC-4:p<0.05) concomitante à diminuição de E-caderina (SCC-4: p<0.05). A exposição à acidez também provocou, em ambas as linhagens, aumento da capacidade de formar orosferas em placa de baixa aderência, denotando um fenótipo pluripotente (SCC-4: p=0.007/ SCC-9: p= 0.1202). Tal resultado foi reforçado com aumento da expressão gênica do marcador de célula-tronco tumoral CD44 (p= 0.0325). na linhagem SCC-4. No entanto, observamos diminuição da expressão de Bmi-1(p=0.0572) em relação ao controle. A resistência à Cisplatina aumentou nos casos de exposição contínua à acidez (SCC-4: p<0,05). O recondicionamento em meio neutro reverteu a sensibilidade celular (SCC-4: p>0,05). Concluímos que a acidez extracelular no carcinoma espinocelular bucal aumenta a capacidade de migração, induz o fenótipo de células tronco-tumorais e aumenta a resistência a quimioterápicos. / To expand our knowledge about the biology of oral squamous cell carcinoma is crucial for the development of new therapeutic strategies and to improve the survival of the patients affected by this pathology. Therefore, understanding the contributions of the tumor microenvironment to carcinogenesis is very important. An important feature to be evaluated of the tumor microenvironment is the acidification of the extracellular medium. Considering that acidic pH is related to the greater aggressiveness of the tumor, the aim of this study is to analyze the effects of an acidic microenvironment on the biology of oral squamous cell carcinoma cells. We realized two reviews of the literature, in which the following themes were evaluated: the influence of extracellular acidity on the invasion and migration; and the molecular mechanisms involved in the resistance to chemotherapeutic treatment, induced by the acidity of the tumor microenvironment. These revisions helped to construct the third article of this thesis, which proposed to compare the behavior of squamous cell carcinoma lines (SCC-4 and SCC-9) and keratinocytes (HaCat), cultured under pH 6.8 was compared to cells maintained at pH 7.4. For the statistical analysis, the data distribution was initially performed, followed by the statistical comparison of the groups using, for normal distribution, ANOVA and ANOVA two-way tests. All analysis was performed in the GraphPad Prism 5.0 program and the level of significance considered was p <0.05.After continuous or intermittent exposure to pH 6.8, cell adaptation was assessed by the clonogenic assay. In addition, the migratory capacity of the cells was evaluated by the wound healing and time-lapse assays. The gene expression related to undifferentiation and pluripotency was assessed by real-time PCR analysis of the Bmi-1 and CD44 markers, as well as by the orosphere assay. The resistance of these cell groups to anti-cancer treatment was assessed by the sulforhodamine B cell viability assay after treatment with Cisplatin. We observed that both cell lines changed their morphology to a mesenchymal aspect. When assessed the migratory profile, it was observed that SCC-9 cells showed higher migration capacity after exposure to pH6.8. Increased cell migration may be caused by the induction of the epithelial-mesenchymal transition, as we observed increased N-cadherin (SCC-4:p<0.05) expression concomitant with decreased E-cadherin (SCC-4: p<0.05). Exposure to acidity also led to increased ability to form orospheres on low-attachment dishes, denoting a pluripotent phenotype in both strains (SCC-4: p=0.007/ SCC-9: p= 0.1202). This result was reinforced by increased expression of the CD44 (p= 0.0325) tumor cell marker in the SCC- 4 cells. However, we observed a decrease in the expression of Bmi-1(p=0.0572) in relation to the control. Resistance to Cisplatin increased when cells were continuously exposed to acidity(SCC-4: p<0,05). Neutral reconditioning reversed cell sensitivity (SCC-4: p>0,05). We conclude that extracellular acidity in oral squamous cell carcinoma increases the migration capacity, induces the cancer stem cell phenotype and increases resistance to chemotherapy.

Research in the biomedical sciences is incredibly diverse and often involves the interaction of specialists in a variety of fields. In particular, quantitative, mathematical, and computational methods are increasingly playing significant roles in studying problems arising in biomedical science. This is particularly exciting for mathematical modeling as the complexity of biological systems poses new challenges to modelers and leads to interesting mathematical problems. On the other hand mathematical modeling can provide considerable insight to laboratory and clinical researchers. In this thesis we develop mathematical representations for three biological processes that are of current interest in biomedical science. A deeper understanding of these processes is desirable not only from the standpoint of basic science, but also because of the connections these processes have with certain diseases. The processes we consider are collective cell motility, bone remodeling, and injury response in articular cartilage. Our goals are to develop mathematical representations of these processes that can provide a conceptual framework for understanding the processes at a fundamental level, that make rigorous the intuition biological researchers have developed about these processes, and that help to translate theoretical and experimental work into information that can be used in clinical settings where the primary concern is in treating diseases associated with the process.

No description available.

Ampliar nosso conhecimento sobre a biologia do carcinoma espinocelular bucal é fundamental para o desenvolvimento de novas estratégias terapêuticas e para melhorar a sobrevida dos pacientes acometidos por essa patologia. Para tanto, compreender as contribuições do microambiente tumoral à carcinogênese é muito importante. Um característica importante a ser avaliada do microambiente tumoral é a acidificação do meio extracelular. Considerando que o pH ácido tumoral está relacionado à maior agressividade da lesão, o objetivo deste projeto é estudar os efeitos de um microambiente ácido na biologia de células de carcinoma espinocelular bucal. Para tanto, foram realizadas duas revisões da literatura, nas quais foram avaliados os seguintes temas: influência da acidez extracelular na invasão e migração; e os mecanismos moleculares envolvidos na resistência ao tratamento quimioterápico, induzida pela acidez do microambiente tumoral. Tais revisões embasaram a construção do terceiro artigo desta tese, o qual se propôs a comparar o comportamento de células linhagens de carcinoma espinocelular bucal (SCC-4 e SCC-9) e queratinócitos (HaCat) cultivadas em meio de cultura de pH 6.8 com células mantidas em meio neutro pH 7.4. As células foram expostas de forma contínua ou intermitente ao pH 6.8 e a adaptação das células foi avaliada pelo ensaio clonogênico. Além disso, as células foram avaliadas quanto à sua capacidade migratória pelo ensaio de cicatrização de feridas e de time lapse. A expressão gênica relacionada à indiferenciação e pluripotência foi investigada por PCR em tempo real com os marcadores Bmi-1 e CD44, assim como pelo ensaio de orosferas. A resistência desses grupos de células ao tratamento anti-câncer foi avaliada pelo ensaio de viabilidade celular da sulforodamina B após o tratamento com Cisplatina. Para a análise estatística, inicialmente foi realizada a distribuição dos dados, seguido da comparação estatística dos grupos utilizando, para distribuição normal, os testes ANOVA e ANOVA de duas vias. Toda a análise foi realizada no programa GraphPad Prism 5.0 e o nível de significância considerado foi de p< 0.05.Observamos que ambas as linhagens mudaram sua morfologia para um aspecto mesenquimal. Ao avaliar o perfil migratório observou-se que as células SCC-9 apresentaram maior capacidade de migração após a exposição ao pH6.8. O aumento da migração celular pode ser causado pela indução da transição epitélio-mesênquima, visto que observamos o aumento da expressão de N-caderina (SCC-4:p<0.05) concomitante à diminuição de E-caderina (SCC-4: p<0.05). A exposição à acidez também provocou, em ambas as linhagens, aumento da capacidade de formar orosferas em placa de baixa aderência, denotando um fenótipo pluripotente (SCC-4: p=0.007/ SCC-9: p= 0.1202). Tal resultado foi reforçado com aumento da expressão gênica do marcador de célula-tronco tumoral CD44 (p= 0.0325). na linhagem SCC-4. No entanto, observamos diminuição da expressão de Bmi-1(p=0.0572) em relação ao controle. A resistência à Cisplatina aumentou nos casos de exposição contínua à acidez (SCC-4: p<0,05). O recondicionamento em meio neutro reverteu a sensibilidade celular (SCC-4: p>0,05). Concluímos que a acidez extracelular no carcinoma espinocelular bucal aumenta a capacidade de migração, induz o fenótipo de células tronco-tumorais e aumenta a resistência a quimioterápicos. / To expand our knowledge about the biology of oral squamous cell carcinoma is crucial for the development of new therapeutic strategies and to improve the survival of the patients affected by this pathology. Therefore, understanding the contributions of the tumor microenvironment to carcinogenesis is very important. An important feature to be evaluated of the tumor microenvironment is the acidification of the extracellular medium. Considering that acidic pH is related to the greater aggressiveness of the tumor, the aim of this study is to analyze the effects of an acidic microenvironment on the biology of oral squamous cell carcinoma cells. We realized two reviews of the literature, in which the following themes were evaluated: the influence of extracellular acidity on the invasion and migration; and the molecular mechanisms involved in the resistance to chemotherapeutic treatment, induced by the acidity of the tumor microenvironment. These revisions helped to construct the third article of this thesis, which proposed to compare the behavior of squamous cell carcinoma lines (SCC-4 and SCC-9) and keratinocytes (HaCat), cultured under pH 6.8 was compared to cells maintained at pH 7.4. For the statistical analysis, the data distribution was initially performed, followed by the statistical comparison of the groups using, for normal distribution, ANOVA and ANOVA two-way tests. All analysis was performed in the GraphPad Prism 5.0 program and the level of significance considered was p <0.05.After continuous or intermittent exposure to pH 6.8, cell adaptation was assessed by the clonogenic assay. In addition, the migratory capacity of the cells was evaluated by the wound healing and time-lapse assays. The gene expression related to undifferentiation and pluripotency was assessed by real-time PCR analysis of the Bmi-1 and CD44 markers, as well as by the orosphere assay. The resistance of these cell groups to anti-cancer treatment was assessed by the sulforhodamine B cell viability assay after treatment with Cisplatin. We observed that both cell lines changed their morphology to a mesenchymal aspect. When assessed the migratory profile, it was observed that SCC-9 cells showed higher migration capacity after exposure to pH6.8. Increased cell migration may be caused by the induction of the epithelial-mesenchymal transition, as we observed increased N-cadherin (SCC-4:p<0.05) expression concomitant with decreased E-cadherin (SCC-4: p<0.05). Exposure to acidity also led to increased ability to form orospheres on low-attachment dishes, denoting a pluripotent phenotype in both strains (SCC-4: p=0.007/ SCC-9: p= 0.1202). This result was reinforced by increased expression of the CD44 (p= 0.0325) tumor cell marker in the SCC- 4 cells. However, we observed a decrease in the expression of Bmi-1(p=0.0572) in relation to the control. Resistance to Cisplatin increased when cells were continuously exposed to acidity(SCC-4: p<0,05). Neutral reconditioning reversed cell sensitivity (SCC-4: p>0,05). We conclude that extracellular acidity in oral squamous cell carcinoma increases the migration capacity, induces the cancer stem cell phenotype and increases resistance to chemotherapy.

Ampliar nosso conhecimento sobre a biologia do carcinoma espinocelular bucal é fundamental para o desenvolvimento de novas estratégias terapêuticas e para melhorar a sobrevida dos pacientes acometidos por essa patologia. Para tanto, compreender as contribuições do microambiente tumoral à carcinogênese é muito importante. Um característica importante a ser avaliada do microambiente tumoral é a acidificação do meio extracelular. Considerando que o pH ácido tumoral está relacionado à maior agressividade da lesão, o objetivo deste projeto é estudar os efeitos de um microambiente ácido na biologia de células de carcinoma espinocelular bucal. Para tanto, foram realizadas duas revisões da literatura, nas quais foram avaliados os seguintes temas: influência da acidez extracelular na invasão e migração; e os mecanismos moleculares envolvidos na resistência ao tratamento quimioterápico, induzida pela acidez do microambiente tumoral. Tais revisões embasaram a construção do terceiro artigo desta tese, o qual se propôs a comparar o comportamento de células linhagens de carcinoma espinocelular bucal (SCC-4 e SCC-9) e queratinócitos (HaCat) cultivadas em meio de cultura de pH 6.8 com células mantidas em meio neutro pH 7.4. As células foram expostas de forma contínua ou intermitente ao pH 6.8 e a adaptação das células foi avaliada pelo ensaio clonogênico. Além disso, as células foram avaliadas quanto à sua capacidade migratória pelo ensaio de cicatrização de feridas e de time lapse. A expressão gênica relacionada à indiferenciação e pluripotência foi investigada por PCR em tempo real com os marcadores Bmi-1 e CD44, assim como pelo ensaio de orosferas. A resistência desses grupos de células ao tratamento anti-câncer foi avaliada pelo ensaio de viabilidade celular da sulforodamina B após o tratamento com Cisplatina. Para a análise estatística, inicialmente foi realizada a distribuição dos dados, seguido da comparação estatística dos grupos utilizando, para distribuição normal, os testes ANOVA e ANOVA de duas vias. Toda a análise foi realizada no programa GraphPad Prism 5.0 e o nível de significância considerado foi de p< 0.05.Observamos que ambas as linhagens mudaram sua morfologia para um aspecto mesenquimal. Ao avaliar o perfil migratório observou-se que as células SCC-9 apresentaram maior capacidade de migração após a exposição ao pH6.8. O aumento da migração celular pode ser causado pela indução da transição epitélio-mesênquima, visto que observamos o aumento da expressão de N-caderina (SCC-4:p<0.05) concomitante à diminuição de E-caderina (SCC-4: p<0.05). A exposição à acidez também provocou, em ambas as linhagens, aumento da capacidade de formar orosferas em placa de baixa aderência, denotando um fenótipo pluripotente (SCC-4: p=0.007/ SCC-9: p= 0.1202). Tal resultado foi reforçado com aumento da expressão gênica do marcador de célula-tronco tumoral CD44 (p= 0.0325). na linhagem SCC-4. No entanto, observamos diminuição da expressão de Bmi-1(p=0.0572) em relação ao controle. A resistência à Cisplatina aumentou nos casos de exposição contínua à acidez (SCC-4: p<0,05). O recondicionamento em meio neutro reverteu a sensibilidade celular (SCC-4: p>0,05). Concluímos que a acidez extracelular no carcinoma espinocelular bucal aumenta a capacidade de migração, induz o fenótipo de células tronco-tumorais e aumenta a resistência a quimioterápicos. / To expand our knowledge about the biology of oral squamous cell carcinoma is crucial for the development of new therapeutic strategies and to improve the survival of the patients affected by this pathology. Therefore, understanding the contributions of the tumor microenvironment to carcinogenesis is very important. An important feature to be evaluated of the tumor microenvironment is the acidification of the extracellular medium. Considering that acidic pH is related to the greater aggressiveness of the tumor, the aim of this study is to analyze the effects of an acidic microenvironment on the biology of oral squamous cell carcinoma cells. We realized two reviews of the literature, in which the following themes were evaluated: the influence of extracellular acidity on the invasion and migration; and the molecular mechanisms involved in the resistance to chemotherapeutic treatment, induced by the acidity of the tumor microenvironment. These revisions helped to construct the third article of this thesis, which proposed to compare the behavior of squamous cell carcinoma lines (SCC-4 and SCC-9) and keratinocytes (HaCat), cultured under pH 6.8 was compared to cells maintained at pH 7.4. For the statistical analysis, the data distribution was initially performed, followed by the statistical comparison of the groups using, for normal distribution, ANOVA and ANOVA two-way tests. All analysis was performed in the GraphPad Prism 5.0 program and the level of significance considered was p <0.05.After continuous or intermittent exposure to pH 6.8, cell adaptation was assessed by the clonogenic assay. In addition, the migratory capacity of the cells was evaluated by the wound healing and time-lapse assays. The gene expression related to undifferentiation and pluripotency was assessed by real-time PCR analysis of the Bmi-1 and CD44 markers, as well as by the orosphere assay. The resistance of these cell groups to anti-cancer treatment was assessed by the sulforhodamine B cell viability assay after treatment with Cisplatin. We observed that both cell lines changed their morphology to a mesenchymal aspect. When assessed the migratory profile, it was observed that SCC-9 cells showed higher migration capacity after exposure to pH6.8. Increased cell migration may be caused by the induction of the epithelial-mesenchymal transition, as we observed increased N-cadherin (SCC-4:p<0.05) expression concomitant with decreased E-cadherin (SCC-4: p<0.05). Exposure to acidity also led to increased ability to form orospheres on low-attachment dishes, denoting a pluripotent phenotype in both strains (SCC-4: p=0.007/ SCC-9: p= 0.1202). This result was reinforced by increased expression of the CD44 (p= 0.0325) tumor cell marker in the SCC- 4 cells. However, we observed a decrease in the expression of Bmi-1(p=0.0572) in relation to the control. Resistance to Cisplatin increased when cells were continuously exposed to acidity(SCC-4: p<0,05). Neutral reconditioning reversed cell sensitivity (SCC-4: p>0,05). We conclude that extracellular acidity in oral squamous cell carcinoma increases the migration capacity, induces the cancer stem cell phenotype and increases resistance to chemotherapy.

A promising approach for the study of Glioblastoma are organotypic murine brain tissue slices as a substrate for the glioma cells to invade into. Current 3D assays based on this principle involved the use of tumor spheroids or cell suspensions in co-culture with the brain tissue slices. While this allowed for the study of glioma cell invasion, tumor spheroids lack the microarchitecture of patient-derived tumor tissue or glioma xenografts. This study has expanded this type of assay by investigating the viability of glioma xenograft slices in co-culture with organotypic murine brain tissue slices, proposing facile quantification methods of tumor growth and invasion and using this system for studying the effects of small molecule inhibitors. The organotypic murine brain tissue slices were prepared by slicing mouse brains in the coronal axis, using a vibratome, to a thickness of 300 µm. The slices were then transferred onto tissue culture membrane inserts for growth in air-liquid interface culture. A single mouse brain allowed for the production of multiple organotypic murine brain tissue slices, thus drastically reducing the number of animals needed for the study. GBM tumor xenografts from mice were sliced similarly on a vibratome, and circular portions with a diameter of 2 mm were placed on top of the murine brain tissue slices. After 7 days in culture, tissue slice co-cultures were analyzed by immunohistochemical staining of vertical sections, containing both the tumor and the murine brain tissue, for Type III intermediary filament proteins Vimentin and GFAP and the neural crest cell marker S-100. Independent of the cell line used for xenograft preparation, tumor tissues stained strongly positive for Vimentin, while the normal mouse brain tissue stained negative (in the studied region), so Vimentin was used as the primary tumor marker. For the quantification of the data acquired from micrographs, the tumor height, depth as well as the area of the invading cells and the tumor upper area (situated above the air margin of the brain tissue slice), the tumor lower area and the recipient tissue area were measured. From these parameters, a number of indices for each sample were derived, such as the tumor invasion index (TI-index), the tumor space occupying growth index (SOG-index), the tumor invasion depth index (TID-index), the space occupying growth depth index (SOGD-index) and the total tumor depth index (TTD-index). To validate the proposed quantification method, the results were compared with tumor spheroid tandem co-cultures. It was shown to be possible for GBM tumor xenografts to maintain their viability and invasive properties in co-culture with organotypic murine brain tissue slices. This was demonstrated immunohistochemically with xenografts from GBM cell lines G55T2, U-87 MG, LN-229 and T98G, displaying progressive tumor cell invasion from day 3 to 7 in co-culture. Tumor cell viability and proliferation in the ex vivo setting were also confirmed by Ki-67 staining. The usage of GBM tumor xenografts was also advantageous compared to spheroid-based assays. The direct comparison between the tumor spheroid and tumor xenograft co-cultures showed stark differences between assays even when using the same cell line. U-87 MG cells showed little or no invasiveness in the spheroid model but the glioma cells were diffusely spread into the murine brain tissue in the xenograft model. G55T2 xenograft co-cultures on the other hand displayed a significant increase of the SOG-index compared to their spheroid counterparts. Results were also compared to previous findings in an orthotopic tumor xenograft model, concluding that the proposed ex vivo model showed significant advantages compared to the orthotopic model by being more facile and cost-effective to implement and displaying comparatively more profound tumor invasiveness when studying the same cell lines. The strong increase of the invasive and space assuming properties of glioma cells in xenograft tissue slice tandem cultures also supports the hypothesis that they are superior to spheroid-based assays in studying tumor invasiveness. The developed GBM xenograft tissue slice tandem-cultures were also used for the ex vivo analysis of drug effects. The treatment with the Pim1 small molecule inhibitor SGI-1776 revealed after 7 days a decrease in the TI-index and SOG-index compared to the untreated group. A similar experiment was performed on spheroid co-cultures using a combination of SGI-1776 and the STAT3 inhibitor Stattic, also resulting in reduced TI- and SOG-indices. From this work, it can be concluded that the developed 3D ex vivo method is a facile and cost-effective platform to study the growth and invasiveness of GBM xenograft tumors in an in vivo-like environment. Owing to the large number of samples that can be generated from a single mouse, it has the potential to drastically reduce the number of animal experiments, addressing the 3R principle. It also showed more profound tumor cell invasiveness compared to spheroid-based ex vivo or orthotopic in vivo xenograft models and provides the quantification tools needed for preclinical drug testing. The model also has the potential to be expanded towards the usage of patient-derived tumor tissue as well as the preclinical testing of non-drug-based therapy options.:1 Introduction 1 1.1 Definition of Glioblastoma 1 1.2 Epidemiology, presentation 2 1.3 Etiology 5 1.4 Molecular pathways relevant in Glioblastoma tumorigenesis 5 1.5 Treatment options 9 1.6 Research models 11 1.7 Tissue slice models 15 1.8 Aims and research objectives 18 2 Publication 19 3 Summary 34 4 References 39 5 Supplementary materials 60 5.1 Additional materials 65 5.2 Comparison of immunohistochemical data to available literature 66 6 Darstellung des eigenen Beitrags 67 7 Erklärung über die eigenständige Abfassung der Arbeit 69 8 Publications 70 9 Curriculum vitae 71 10 Acknowledgements 72