Abstract This thesis focuses on the molecular-level chemistry of the solvation of aluminum salts. Fundamental aspects such as, structural characteristics of the aluminum molecules, hydrolysis, acidity, solvation structure, effect of counter ions, and chemical stability are discussed herein. Static computations augmented with the conductor-like screening model (COSMO) were used to investigate hundreds of planar and cyclic configurations of dimeric, trimeric, tetrameric, and pentameric aluminum complexes. Car–Parrinello molecular dynamics (CPMD) calculations were used to expand investigations to aqueous environments. This thesis consists of four articles and one additional article. The first paper focuses on the structural analysis of the hydrolysis products of AlCl3 · 6H2O. Dimeric, trimeric, and tetrameric aluminum (chloro)hydroxides were investigated in both gas and liquid phase. The liquid environment was modeled by using COSMO. The second and the additional paper concentrate on the chemistry of aluminum sulfate complexes. The second article focuses on identifying hydrolysis products of AlCl3 · 6H2O in the presence of sulfate (H2SO4). The additional paper focuses on the structural characteristics of the hydrolysis products of Al2 (SO4)3 · 18H2O. Structural information was deduced from the ESI MS results with the aid of computational methods. Detected cationic structures closely resembled the aluminum chlorohydrate analogues introduced in the first paper. The third and fourth articles are devoted to the hydrolysis, stability, and dynamics of dimeric and pentameric aluminum (chloro)hydroxides in aquatic environments. During the CPMD simulations, several spontaneous associative hydration reactions were detected in the primary hydration shell of the complexes. Dimeric aluminum chlorohydrates were detected to be stable in liquid conditions, whereas the pentameric aluminum complexes experienced significant topological changes during the simulations. Constrained simulations were used to reveal the role of chloride ions in the hydrolysis processes of dimeric complexes. The effect of the empirical van der Waals corrections to the dynamics of the simulations was also tested for the pentameric system. The results of this thesis showed unequivocally that computational chemistry provides effective tools for structural analysis of inorganic complexes such as, aluminum chlorohydrates and sulfates in both gas and liquid phase. In addition, calculations provided answers to the anomalies detected in the experiments. Hence, theoretical methods are highly recommended to be used alongside with conventional experimental methods in the interpretation of the aluminum species in aqueous solutions and to widen the overall chemical perspective of the hydrolysis of aluminum salts.

Au cours de cette thèse nous avons utilisé la théorie de la fonctionnelle de la densité et les calculs Monte Carlo quantiques pour analyser l'impact des effets de van der Waals sur la structure, l'énergie, et les propriétés des polymorphes de SiO2 et B2O3. Nous avons mis en évidence un phénomène de compensation d'erreur, lié à l'utilisation de fonctionnelle d'échange et corrélation incluant les effets de van der Waals, dans les polymorphes basse densité de SiO2 entre une sur-évaluation des longueurs Si-O et une sous-estimation des angles Si-O-Si. Nous avons effectué des calculs Monte-Carlo quantiques afin de prédire la structure et l'énergie d'un nouveau polymorphe de B2O3 avec une grande précision, ce qui nous a permis d'évaluer les performances de différentes fonctionnelles d'échange et corrélation sur B2O3. Nous avons ensuite utilisé la théorie de la fonctionnelle de la densité pour prédire la structure et l'énergie de 25 nouveaux polymorphes de B2O3 , ainsi que leurs propriétés mécaniques et électroniques. Cette étude permet de proposer une explication à l'anomalie de cristallisation de B2O3, et réconcilie le comportement de B2O3 avec celui des autres oxydes formateurs de réseaux. Elle souligne la possibilité de créer des borates cristallins aux propriétés mécaniques remarquables, et confirme qu'il existe lien entre polymorphisme de basse énergie et facilité de vitrification. / During this PhD I use density functional theory and quantum Monte Carlo to evaluate the importance of van der Waals effects on the structures, the energies, and the properties of SiO2 and B2O3 polymorphs. I show that exchange-correlation functionals including dispersion effects lead to an error cancellation between an overestimation of the Si-O distances and an underestimation of the Si-O-Si angles in low densities SiO2 polymorphs. By using quantum Monte Carlo calculations, I have predicted with high accuracy the relative energy of a new B2O3 polymorph, which allowed me to evaluate the performances of different exchange-correlation functionals on this material. I then use the best functional possible to compute the mechanical and electronic properties of 25 predicted B2O3 polymorphs. Some of the predicted polymorphs exhibit intriguing mechanical properties, such as negative linear compressibility, auxeticity and anisotropy. These calculations allow me to make a hypothesis explaining the crystallization anomaly in B2O3. They underline a seemingly universal link between low energy polymorphism and ease of vitrification.

La plupart des fonctions énergie potentielle utilisées pour simuler les systèmes biologiques complexes ne traitent qu'implicitement la polarisation électronique et ce, de façon très incomplète. Bien qu'efficaces pour un large éventail d'applications, ces champs de force atteignent rapidement leurs limites dès lors que les effets de polarisation électronique sont importants. Tel est le cas par exemple au site actif des métalloprotéines où l'ion métallique polarise fortement son environnement. Dans cette thèse, j'ai développé une approche basée sur la mécanique quantique pour obtenir des paramètres d'un champ de force polarisable ayant pour composantes des charges, des polarisabilités distribuées d'ordre zéro et un (isotrope) et un potentiel de van der Waals décrit par une fonction de Buckingham. L'énergie d'induction peut être atténuée par une fonction de Tang et Toennies pour décrire l'énergie d'échange-induction. Cette approche a été effectuée avec succès pour l'interaction d'ions avec l'eau et le benzène mais aussi dans le cas d'un dimère d'eau. Une première étude des résultats en dynamique moléculaire montre que les paramètres obtenus en phase gazeuse peuvent se transférer pour les simulations en phase condensée / Most of the energy potential functional used in biological systems only treat electronic polarization implicitely and this, in an incomplete way. Even very effective for many applications, those force fields reach there limits when the polarization effects are important. This is the case, for example, at the active site of metalloproteins where the metallic ion heavily polarizes its environment. We will present a strategy to take into account the polarization through polarizability distributed on atoms obtained by quantum chemical calculations. The interaction energies have been compared with a reference SAPT (\textit{Symmetry Adapted Perturbation Theory}) calculation which permits to expand the interaction in electrostatics, induction and van der Waals contributions. I will present the interaction of ions with water, benzene and also water dimer interactions. Preliminary results in molecular dynamics seems to confirm that gas phase parameters can be transfered to condensed phase

Carbon nanotubes have unique electronic, optical, mechanical, and transport properties which make them an important element of nanoscience and nanotechnology. However, successful application and integration of carbon nanotubes into new nanodevices requires fundamental understanding of their property changes under the influence of many external factors. This dissertation presents qualitative and quantitative theoretical understanding of property changes, while carbon nanotubes are exposed to the deformations, defects, external electric fields, and adsorption. Adsorption mechanisms due to Van der Waals dispersion forces are analyzed first for the interactions of graphitic materials and biological molecules with carbon nanotubes. In particular, the calculations are performed for the carbon nanotubes and graphene nanoribbons, DNA bases, and their radicals on the surface of carbon nanotubes in terms of binding energies, structural changes, and electronic properties alterations. The results have shown the importance of many-body effects and discrete nature of system, which are commonly neglected in many calculations for Van der Waals forces in the nanotube interactions with other materials at nanoscale. Then, the effect of the simultaneous application of two external factors, such as radial deformation and different defects (a Stone Wales, nitrogen impurity, and mono-vacancy) on properties of carbon nanotubes is studied. The results reveal significant changes in mechanical, electrical, and magnetic characteristics of nanotubes. The complicated interplay between radial deformation and different kinds of defects leads to the appearance of magnetism in carbon nanotubes which does not exist in perfect ones. Moreover, the combined effect of radial deformation and external electric fields on their electronic properties is shown for the first time. As a result, metal-semiconductor or semiconductor-metal transitions occur and are strongly correlated with the strength and direction of external electric field and the degree of radial deformations.

abstract: Liquid-phase exfoliation (LPE) is a straightforward and scalable method of producing two-dimensional nanomaterials. The LPE process has typical been applied to layered van der Waals (vdW) solids, such as graphite and transition metal dichalcogenides, which have layers held together by weak van der Waals interactions. However, recent research has shown that solids with stronger bonds and non-layered structures can be converted to solution-stabilized nanosheets via LPE, some of which have shown to have interesting optical, magnetic, and photocatalytic properties. In this work, two classes of non-vdW solids – hexagonal metal diborides and boron carbide – are investigated for their morphological features, their chemical and crystallographic compositions, and their solvent preference for exfoliation. Spectroscopic and microscopic techniques are used to verify the composition and crystal structure of metal diboride nanosheets. Their application as mechanical fillers is demonstrated by incorporation into polymer nanocomposite films of polyvinyl alcohol and by successful integration into liquid photocurable 3D printing resins. Application of Hansen solubility theory to two metal diboride compositions enables extrapolation of their affinities for certain solvents and is also used to find solvent blends suitable for the nanosheets. Boron carbide nanosheets are examined for their size and thickness and their exfoliation planes are computationally analyzed and experimentally investigated using high-resolution transmission electron microscopy. The resulting analyses indicate that the exfoliation of boron carbide leads to multiple observed exfoliation planes upon LPE processing. Overall, these studies provide insight into the production and applications of LPE-produced nanosheets derived from non-vdW solids and suggest their potential application as mechanical fillers in polymer nanocomposites. / Dissertation/Thesis / Doctoral Dissertation Chemistry 2020

The evolution of electronics has become the staple thrust of modern scientific innovation: a need for advancing materials engineered for our equally rapidly advancing needs and computing requirements has fueled recent wealth of new materials. Here, I use the ideals of exotic materials design to answer this need, specifically for 2D materials. Two-dimensional (2D) van der Waals materials with in-plane anisotropy are of great interest for directional transport of charge and energy. I perform solid state synthesis to produce several such materials: an intrinsic antiferromagnet, superatomic semiconductors, and a polytype system with a component that displays the possibilities of Weyl nodes.The former, chromium sulfur bromide (CrSBr), is first synthesized, then fully studied structurally, compositionally, electronically, and magnetically. Second harmonic generation (SHG), more advanced than older techniques such as magneto-optical Kerr spectroscopy or Raman spectroscopy, allows us to fully understand the magnetic symmetry in this system as an interlayer antiferromagnetic and intralayer ferromagnetic in-plane anisotropic material. I also introduce published work in which we integrate CrSBr into different devices to show the utility of this fundamental research into a more practical application setting. It is used to stimulate more magnetic response from graphene — promising ultra-thin magnetic memory or sensory devices in future projects. Applying strain and external magnetic fields provides another tuning knob through which to access different functional modalities. In the latter third of this dissertation, we report a layered van der Waals semiconductor with in-plane anisotropy built upon the superatomic units of Mo₆S₃Br₆ (MSB), a robust construction with a direct gap of 1.64 eV. Next, MSB and Re₆Se₈Cl₂, another analogous superatomic vdW material, are potential candidates for optoelectronic applications; we qualify this by studying their Auger dynamics as a measure of quantum efficiency. Finally, layered van der Waals (vdW) materials belonging to the MM’Te₄ structure class have recently received intense attention due to their ability to host exotic electronic transport phenomena, such as in-plane transport anisotropy, Weyl nodes, and superconductivity. In summary, we have discovered two ternary exfoliatable vdW TMD polytypes with the composition TaFeTe₄, one of which (ꞵ) shows the prerequisite symmetry elements to be a type-II Weyl semimetal. This dissertation is a treatise to solid state synthesis, exploration into the more exotic spectrum of 2D materials, and robust and eclectic methods used to paint a full picture of different magnetic and electronic systems within.

This licentiate thesis addresses two important aspects of the van der Waals and the Casimir-Polder ground-state and excited-state (resonance) interactions between two atoms or molecules. The first is the finite-size effect and the second is the non-perturbative effect. Going beyond the usual assumption of atoms and molecules as point particles and adopting a description of finite size, the divergence inherent in such interaction energies in the limit of zero separation distance between the two interacting atoms or molecules is removed. The attainment of finite interaction energy at such close separation distance facilitates the estimation of van der Waals force contribution to the binding energy of the molecules, and towards surfaces. This is particularly important for noble atoms. We investigate in detail for a pair of helium (He) atoms and krypton (Kr) atoms, and for a pair of methane (CH4) molecules considering its environmental importance. The application of finite size further leads to finite self energies of the atoms. The expression of the interaction energy, as is discussed in detail in this thesis, typically contains a logarithmic factor of the form ln(1-x). Formerly, in evaluating the interaction energies, this factor is customarily series-expanded and truncated in the leading order with certain assumptions. This thesis explores the effect of using the full expression, which we refer to as the non-perturbative (or, the non-expanded) theory, analytically wherever possible as well as numerically. The combined application of the finite-size theory and the non-perturbative theory results in as much as 100% correction in the self energy of atoms in vacuum. This may give rise to significant physical consequences, for example, in the permeabilities of atoms across dielectric membranes. The non-perturbative theory, in addition, exhibits interesting behaviour in the retarded resonance interaction. / <p>QC 20160509</p>

Since the first successful isolation and subsequent characterization of graphene, the interest in two dimensional (2-D) materials has expanded exponentially. Despite the dozens of graphene-like van der Waals materials that have been found and their interesting properties, a significant obstacle in realizing their promise is their instability especially for monolayer and thin layers at elevated temperature. To overcome the obstacle of passivating the 2-D materials and study their properties at elevated temperature, we take advantage of the potential improvements afforded by assembling heterostructures by stacking the atomic thick 2-D materials together hexagonal boron nitride (ℎ-BN) which possess high chemical stability and thermal stability. In this dissertation, several experiments are described in detail in which we utilized h-BN encapsulation to passivate atomically-thin transition metal dichalcogenide and studied their properties at elevated temperature. In the first project we demonstrated that chemical vapor deposition (CVD)-grown flakes of high-quality monolayers of WS₂ can be stabilized at elevated temperatures by encapsulation with only top ℎ-BN layers in the presence of ambient air, N₂ or forming gas. The best passivation occurs for ℎ-BN covered samples with flowing N₂. In the second project, we demonstrated that encapsulating monolayer MoSe₂ and WS₂ with top and bottom ℎ-BN can improve their thermal stability at high temperature and increase their photoluminescence (PL). The increased PL likely occurs because impurities are laterally expelled from the TMD stack during heating. In the third project, we demonstrated the passivation of different modes of ℎ-BN encapsulation on thin layer FeSe sample by using temperature dependent Raman scattering. The complete encapsulation showed the best protection of thin layer FeSe. Finally, we utilized the temperature dependence of the Raman mode of thin-layer FeSe with complete encapsulation and applied a noncontact method to measure the thermal conductivity of the thin-layer FeSe.

Small clusters of [6,6] phenyl-C61-butyric acid methyl ester (PCBM) molecules are analyzed with respect to their equilibrium geometries and associated electronic as well as energetic properties. Plane wave density functional theory (PWDFT) computations, assisted by molecular dynamics (MD) simulations, are performed on systems of the form PCBMn (n = 1-5). The bonding operative in these units is described as a cooperation between HO bonding, involving the C5H9O2 groups of the PCBM molecule, and fullerene-fullerene attraction. The maximally stable structures identified tend to include a dimer motif that combines both interaction modes. The great importance of van-der-Waals effects in stabilizing the studied clusters is demonstrated by comparing the PCBM3 series with and without inclusion of a van-der-Waals term in the PWDFT procedure. The two approaches yield reverse orders of stability. A decreasing tendency in the Kohn-Sham HOMO-LUMO gaps of PCBMn with the cluster size may be used to monitor PCBM aggregation in the active layer of organic photovoltaic devices by optical spectroscopy.

The adiabatic or Born-Oppenheimer approximation is often used in molecular calculations to simplify the solution to the Schrodinger equation. The basis of the approximation is the large difference in the relative motions of the nuclei and electrons in the molecule-the electrons are able to respond almost instantly to the movements of the nuclei. Thus, the nuclei may be regarded as being fixed in a certain position and the Schrodinger equation can then be solved using the potential obtained by solving the electronic problem at fixed nuclear configuration. A similar argument can be used to decouple the angular and radial motions of many van der Waals complexes because, like nuclei in molecules, the radial motions in many van der Waals complexes are strongly localized. Fixing the radial separation between the atoms and molecules in the complex to a particular value results in a Schrodinger equation that is much simpler to solve because it is only dependent on angles. van der Waals complexes containing helium atoms, however, present a dilemma because the extremely weak interactions present also lead to large amplitude radial as well as angular motions. Because the basis of the adiabatic approximation is a large difference in time scale between the angular and radial motions, the validity of the adiabatic approximation for helium complexes is uncertain. In this thesis, the adiabatic separation of angular and radial motion is shown to be accurate for extremely floppy complexes of helium by demonstrating its use on the van der Waals molecule He-HCN. A major application of this method is expected to be the quick calculation of approximate wave functions for Diffusion Monte Carlo studies of the rotation of impurity molecules inside ultra-cold droplets of helium. The method presented here is significantly faster than other methods (e.g., Variational Monte Carlo) that have been used to calculate approximate wave functions for Diffusion Monte Carlo.