Master of Science / Department of Agronomy / David B. Mengel / Nitrogen fertilizers play an essential role in agricultural production in Kansas, particularly in row crops such as corn (Zea mays L.) and grain sorghum (Sorghum bicolor (L.) Moench). A good portion of the corn and grain sorghum grown in Kansas is typically grown using no-till production systems. These systems leave a large amount of surface residue on the soil surface, which can lead to ammonia volatilization losses from surface applied urea-containing fertilizers and immobilization of N fertilizers placed in contact with the residue. Leaching and denitrification can also be a problem on some soils. Current nitrogen prices, as well as concerns over environmental stewardship, are forcing producers to make smarter choices in the fertilizer products used as well as when and how the materials are applied, to optimize their nitrogen use efficiency. A common practice throughout Kansas is to apply N fertilizers prior to planting, sometimes up to 6 month prior to planting. What affect does this practice have on nitrogen availability to the growing crop? Current Kansas State University (KSU) soil test fertilizer recommendations assume 50% nitrogen use efficiency. This means of every pound of nitrogen applied only half will be utilized by the plant and turned into valuable grain. Possible solutions to help increase nitrogen use efficiency are the use of nitrogen additives which are currently on the market and claim to reduce nitrogen loss through denitrification and volatilization as well as the use of timing and application of fertilizers to further increase nitrogen use efficiency. The objective of this study is to evaluate different N fertilizer products, as well as additives and application practices and determine whether specific combinations can improve yield and N use efficiency of no-till corn and grain sorghum. The long-term goal of this study is to quantify some of these relationships to assist farmers in selecting specific combinations that could enhance yield and profitability. In this study five tools for preventing N loss were examined: fertilizer placement, or placing N below the soil surface or in bands on the residue-covered soil surface to reduce immobilization and/or volatilization; use of a urease inhibitor Agrotain (NBPT) that blocks the urease hydrolysis reaction that converts urea to ammonia and potentially could reduce ammonia volatilization; the use of a commercially available additive, Agrotain Plus, that contains both a nitrification inhibitor (DCD) and a urease inhibitor to slow both urea hydrolysis and the rate of ammonium conversion to nitrate and subsequent denitrification or leaching loss; use of a commercial product NutriSphere-N, which claims urease and nitrification inhibition; and the use of a polyurethane plastic-coated urea to delay release of urea fertilizer until the crop can use it. The ultimate goal of using these practices or products is to increase N uptake by the plant and enhance yield. An important measurement that was developed for this research was the use of a greenleaf firing index which used the number of green leaves below the ear at pollination as a key measurement in determining the effectiveness of fertilizer placement, application method, application timing and the use of nitrogen additives. If significant differences in lower leaf nitrogen stress are found, the potential exists to further develop this index and correlate differences observed with key parameters of nitrogen uptake such as ear-leaf nitrogen concentration, total nitrogen uptake and grain yield. Results observed from this research show that the potential to increase nitrogen use efficiency and reduce nitrogen loss do exist with the use of certain nitrogen additives, application methods and application timing. When conditions are conducive for nitrogen loss the use of currently available tools to protect nitrogen from volatilization, immobilization and/or denitrification loss significantly increased yields in the corn experiments. Results from the grain sorghum research indicate that when N losses limit yield, the use of products and practices enhance yield. In locations where nitrogen loss is minimal or low yields limit nitrogen response, the use of these practices was not found to be helpful.

Master of Science / Department of Agricultural Economics / Timothy Dalton / Previous research in low-income countries reveals that genetically modified (GM) maize has the potential to increase yield and reduce labor use; however, other issues, especially regarding Roundup Ready (RR) maize, remain mostly unexplored. This research examines the impact of GM maize on yield, cost, and risk among 184 smallholders during the 2009-10 maize production season in two regions in KwaZulu-Natal, South Africa; Hlabisa and Simdlangetsha. Two hybrid maize varieties; Pannar and Carnia, and three GM varieties; Bt, RR, and BR (stacked with Bt and RR) are produced. In both regions, producers of RR and BR maize pay 47% more per kilogram of seed and use 44% less labor per hectare compared to other varieties. Due to low labor costs, net returns from RR and BR varieties are 25% and 40% higher than other varieties in Hlabisa and Simdlangetsha, respectively. Stochastic dominance analysis is used to compare net returns of all five varieties in both regions. RR maize is second-degree stochastic dominant to all other varieties in Simdlangetsha, while no variety is stochastically dominant in Hlabisa. Stochastic efficiency with respect to a function (SERF) analysis indicates that RR maize is the preferred variety for producers over the entire range of risk preferences in both regions. While average maize gross returns are $713 per hectare, risk premiums between $18 and $221 must be paid to RR maize producers, depending on region and farmer risk preference, to persuade them to switch to the second-most preferred variety. Econometric analysis indicates significant yield gains of at least 8% from RR maize, although the yield gain varies greatly when input endogeneity is taken into account. Elasticities of output with respect to labor are 0.41 and 0.82 for RR and non-RR maize respectively, and 0.61 and 0.33 with respect to land. A cost function analysis indicates that RR maize has 19% lower costs per maize plot, which increases to at least a 35% advantage when controlling for selectivity bias. Nonparametric kernel density estimation also reveals consistently lower total and average costs of RR maize at most levels of output, suggesting technological benefits to smallholder farmers from RR maize not available through conventionally-bred hybrids.

Master of Science / Department of Agronomy / Michel D. Ransom / Factors governing potassium fixation and release are poorly understood. This study was conducted to investigate the effects of clay mineralogy and structural iron oxidation state on potassium fixation. Five reference clays and two soil clays were used to capture a range in mineralogical compositions and potassium behaviors. Reference clays used were illite (IMt-1), kaolinite (KGa-1b), montmorillonite (STx-1b), nontronite (NAu-2), and vermiculite (VTx-1). Soil clays used were from the upper 15 cm of a Belvue loam (BEL) and a Cherokee silt (CHE). Potassium fixation capacities were measured on unaltered as well as sodium dithionite reduced forms of each clay. Ferrous and total iron contents were determined photometrically using 1, 10-phenanthroline. Potassium fixation was measured by potassium saturating the clays and washing off exchangeable and solution potassium with solutions of magnesium chloride; samples were then acid digested and the amount fixed was calculated as the amount of potassium in the acid digestion minus the amount originally in the sample. BEL released potassium rather than fixed it while CHE tended to release potassium in the unaltered form and fix potassium in the reduced form. Structural iron reduction significantly impacted the amounts of potassium fixed by VTx-1 and NAu-2, which had the highest total iron contents of all the clays evaluated. NAu-2 and VTx-1 both on average fixed less than 1 mg K g clay[superscript]-1 in the unaltered form and an average of 6 and 11 mg K g clay[superscript]-1, respectively, in the reduced form. Regardless of being in the unaltered or reduced form, KGa-1b fixed essentially no potassium and IMt-1 and STx-1b fixed intermediate amounts of potassium—2 to 4 mg K g clay[superscript]-1 on average. The effects of clay mineralogy and structural iron oxidation state on potassium fixation can largely be explained through an understanding of layer type, layer charge, and charge distribution. In order for potassium fixation to occur, interlayer sites need to be accessible and available. Generally, the greater the negative layer charge the greater the amounts of fixation, with tetrahedral layer charge favoring fixation more than octahedral layer charge, and layer charge being a function of structural iron oxidation state.

Doctor of Philosophy / Department of Agronomy / P.V. Vara Prasad / Sorghum (Sorghum bicolor L. Moench) is the fifth most economically important cereal crop grown worldwide and adapted to a wide range of climatic conditions. Drought stress has been ranked as one of the most significant causes of crop yield loss with its effects on yield and yield components. Conservative water use by plants is one of the strategies that can be used as a drought coping mechanism. The slow wilting trait has been associated with conservative water use and has been found in some sorghum genotypes. The purpose of this study was to use canopy temperature to screen for drought tolerance in sorghum, evaluate water use efficiency for slow wilting sorghum genotypes and determine variability in root morphology and response to drought among sorghum genotypes. Canopy temperature studies were conducted under field conditions using infrared (IR) sensors while water use efficiency and root studies were conducted under greenhouse conditions. Our results showed a distinct separation in canopy temperature among genotypes under field conditions at 2:00 pm to 6:00 pm. Midday canopy temperature depression (CTD) was positively correlated to yield (R2 = 0.19) and harvest index (R2 = 0.11). CTD was also stable for all the genotypes during the period from 1:00 pm to 7:00 pm. There was a negative correlation between CTD and crop water stress index (CWSI) (R2 = 0.34) and a positive one between canopy temperature and CWSI (R2 = 0.50). Evaluation of genotypes for water use efficiency revealed significant variability among sorghum genotypes in the amount of water used (10.48 – 13.52 kg) and transpiration efficiency (TE) (2.64 – 7.11 g kg-1) among genotypes. Slow wilting genotypes were high in TE. Rooting depth increased for some genotypes under drought stress with genotype SC1124 recording the largest increase (180%). Total root length for some genotypes increased by 11 – 113% with genotypes SC224 and SC1019 recording the greatest increase. There was a positive correlation between water used and root length (R2 = 0.21). These results show that there is potential for selection of drought tolerance in sorghum and that genotypes with the slow wilting traits are efficient in water use.

Master of Science / Department of Agronomy / Walt Fick / Prescribed burning has been a common conservation practice on native prairie dating back to the days of pioneer settlement. Advantages include increased forage quality, reduction of undesirable plants, improved wildlife habitat, removal of accumulated dead plant litter and relatively low costs. While spring is the commonly accepted time to burn, little research has been conducted on late-summer and fall burning for specific objectives that include targeting undesirable plant species and measuring potential effects on soil physical properties. The first part of this study was to evaluate the effect that prescribed burning has on population dynamics of sericea lespedeza (Lespedeza cuneata [Dumont] G. Don), rough-leaf dogwood (Cornus drummondii Meyer), and additional woody species. Stem counts and cover estimates were taken from 20, 0.25-m[superscript]2 frames prior to and post-burn. Change in botanical composition, plant density, frequency, and Daubenmire canopy cover estimates were calculated. Sericea lespedeza plant frequency across all clay upland burns decreased 2.27% and increased 4.76% across all loamy/limy upland burns the first growing season post-burn. Dogwood densities increased 3.12 stems m[superscript]-[superscript]2 on spring burns compared to a decrease of 0.30 stems m[superscript]-[superscript]2 on unburned plots the first growing season post-burn. Changes in frequency of other woody species the first growing season post-burn showed significant interactions between burn treatment and ecological site, and between ecological site and year. A significant interaction between burn treatment and ecological site was found on total woody species plant composition changes two growing seasons post-burn for the first year of burn treatments. The secondary part of this study was to evaluate the effect of prescribed burning on soil bulk density and wet-aggregate stability. Soil samples were collected along the same line-transects used for vegetation sampling. Significant differences among mean weight diameters (MWD), percent water-stable aggregates (WSA), and WSA size fractions occurred between burned and unburned soils following burning in the fall of 2011. Monitoring plant and soil response to prescribed burning in different seasons may lead to adjustments being made in management of rangelands where sericea lespedeza, dogwood, and additional woody species occur.

Doctor of Philosophy / Department of Agronomy / Tesfaye Tesso / Fusarium stalk rot and charcoal rot caused by Fusarium thapsinum and Macrophomina phaseolina respectively are devastating global diseases in sorghum that lead to severe quality and yield loss each year. In this study, three sets of interrelated experiments were conducted that will potentially lead to the development of resistance based control option to these diseases. The first experiment was aimed at identifying sources of resistance to infection by M. phaseolina and F. thapsinum in a diverse panel of 300 sorghum genotypes. The genotypes were evaluated in three environments following artificial inoculation. Out of a total of 300 genotypes evaluated, 95 genotypes were found to have resistance to M. phaseolina and 77 to F. thapsinum of which 53 genotypes were resistant to both pathogens. In the second experiment, a set of 79,132 single nucleotide polymorphisms (SNPs) markers were used in an association study to identify genomic regions underlying stalk rot resistance using a multi-locus mixed model association mapping approach. We identified 14 loci associated with stalk rot and a set of candidate genes that appear to be involved in connected functions controlling plant defense response to stalk rot resistance. The associated SNPs accounted for 19-30% of phenotypic variation observed within and across environments. An analysis of associated allele frequencies within the major sorghum subpopulations revealed enrichment for resistant alleles in the durra and caudatum subpopulations compared with other subpopulations. The findings suggest a complicated molecular mechanism of resistance to stalk rots. The objective of the third experiment was to determine the functional relationship between stay-green trait, leaf dhurrin and soluble sugar levels and resistance to stalk rot diseases. Fourteen genotypic groups derived from a Tx642 × Tx7000 RIL population carrying combinations of stay-green quantitative trait loci were evaluated under three environments in four replications. The stg QTL had variable effects on stalk rot disease. Genotypes carrying stg1, stg3, stg1,3 and stg1,2,3,4 expressed good levels of resistance to M. phaseolina but the combination of stg1 and stg3 was required to express the same level of resistance to F. thapsinum. Other stg QTL blocks such as stg2 and stg4 did not have any impact on stalk rot resistance caused by both pathogens. There were no significant correlations between leaf dhurrin, soluble sugar concentration, and resistance to any of the pathogens.

Master of Science / Department of Agronomy / Dorivar A. Ruiz Diaz Suarez / Soybeans have expanded into Western Kansas during the last 50 years, increasing in area by 14,500%. There are several limitations that come with trying to grow soybeans in this region, including fertility constraints, moisture stress, and improper use of fertilizers. However, the largest constraint at this time seems to be the presence of micronutrient deficiencies, specifically iron. This thesis has an introduction, and three major chapters.The objective of the first study on agronomics was the evaluation of the effect of Fe fertilizer application using foliar and seed-applied methods in combination with variety selection for Fe deficiency management of soybean grown under irrigated conditions in Western Kansas. The second study uses multivariate analysis as an exploratory tool useful in determining simultaneous observation and analysis of more than one variable in a multidimensional space. Factor analysis is used to find underlying factors that one variable alone cannot measure. The objective of this study was to determine the underlying factors and the multi-linear models that are associated with soil parameters that can create Fe chlorosis in the Great Plains. The third study looked at different application rates of seed-applied Fe fertilizer to try and determine the optimum application rate for application of chelated Fe in Western Kansas.

Doctor of Philosophy / Department of Agronomy / P.V. Vara Prasad / High temperature (HT) and drought are detrimental to crop productivity, but there is limited variability for these traits among wheat ([italics]Triticum aestivum[end italics] L.) cultivars. Five [italics]Aegilops[end italics] species were screened to identify HT (52 accessions) and drought (31 accessions) tolerant species/accessions and ascertaining traits associated with tolerance. Four synthetic wheats were studied to quantify independent and combined effects of HT and drought. [italics]Aegilops[end italics] species were grown at 25/19°C day/night and 18 h photoperiod. At anthesis, HT was imposed by transferring plants to growth chambers set at 36/30°C, whereas in another experiment, drought was imposed by withholding irrigation. Synthetic wheats were grown at 21/15°C day/night and 18 h photoperiod. At anthesis or 21 d after anthesis, plants were exposed to optimum condition (irrigation + 21/15°C), HT (irrigation + 36/30°C), drought (withhold irrigation + 21/15°C), and combined stress (withhold irrigation + 36/30°C). Stresses were imposed for 16 d. High temperature and drought stress significantly decreased chlorophyll, grain number, individual grain weight, and grain yield of [italics]Aegilops[end italics] species (≥ 25%). Based on a decrease in grain yield, [italics]A. speltoides[end italics] and [italics]A. geniculata[end italics] were most tolerant (~ 61% decline), and [italics]A. longissima[end italics] was highly susceptible to HT stress (84% decline). Similarly, [italics]A. geniculata[end italics] had greater tolerance to drought (48% decline) as compared to other species (≥ 73% decline). Tolerance was associated with higher grains spike [superscript]-1 and/or heavier grains. Within [italics]A. speltoides[end italics], accession TA 2348 was most tolerant to HT with 13.5% yield decline and a heat susceptibility index (HSI) 0.23. Among [italics]A. geniculata[end italics], TA 2899 and TA 1819 were moderately tolerant to HT with an HSI 0.80. TA 10437 of [italics]A. geniculata[end italics] was the most drought tolerant accession with 7% yield decline and drought susceptibility index 0.14. Irrespective of the time of stress, HT, drought, and combined stress decreased both individual grain weight and grain yield of synthetic wheats by ≥ 37%, 26%, and 50%, respectively. These studies suggest a presence of genetic variability among [italics]Aegilops[end italics] species that can be utilized in breeding wheat for HT and drought tolerance at anthesis; and combined stress of drought and high temperature on synthetic wheats are hypo-additive in nature.

Master of Science / Department of Horticulture, Forestry, and Recreation Resources / Steven Keeley / Common dandelion (Taraxacum officinale Weber) is an important perennial weed in turfgrass. Fall is considered the optimal time for postemergence herbicidal control of dandelions; however, applications in spring, when volatility damage to surrounding plants is an additional concern, are often needed. Therefore, we conducted research to determine the volatility of common broadleaf herbicides, and their efficacy when applied at spring and fall application timings. Volatility was determined by applying herbicides to turfgrass and using potted tomatoes as indicator plants. Tomatoes exposed to turfgrass treated with Trimec Classic, Confront, Surge, Escalade 2, and Imprelis exhibited little or no volatility damage, while exposure to Speedzone, 4 Speed XT, and Cool Power caused significant damage. In general, herbicides causing little or no damage were amine formulations. Two field studies determined the effect of spring and fall application timing on dandelion control with several herbicides. Herbicide applications in the spring coincided with dandelion anthesis stages: pre-bloom, peak bloom, and post-bloom. Results were dependent on dandelion pressure in the studies. In 2010, with lower pressure, there were no differences among herbicides at any spring timing when dandelion control was evaluated after one year; all herbicides gave ≥ 80% control. In 2011, with higher dandelion pressure, Imprelis SL and 4 Speed XT provided ≥ 96% dandelion control at the spring pre- and post-bloom timings, which was better than Surge, Escalade 2, Cool Power, and Confront. The best choices for spring efficacy combined with minimal to no volatility were Escalade 2 and Trimec Classic. Finally, because interest in organic dandelion control is increasing, we compared several organic weed control tactics with a conventional herbicide. In a two-year field study, the conventional herbicide gave much better control (> 96%) than any organic method. Horticultural vinegar corn gluten meal, and fertilizer-only gave < 25% control, while hand-weeding gave 58 to 71% control. While hand-weeding was the best of the organic tactics, the time required was considered prohibitive for turfgrass managers, unless initial weed levels were very low.

Doctor of Philosophy / Department of Agronomy / P.V. Vara Prasad / The pathway for the movement of water through plants, from the soil matrix to the atmosphere, constitutes the hydraulic architecture of a plant. The linkage between the hydraulic architecture of woody plants and drought tolerance has received considerable attention, but much less work has been done on grasses. I investigated the linkage between the hydraulic architecture of grasses to physiological patterns of water use across a range of species and conditions. The rate of stomatal conductance (g[subscript]s) and photosynthesis (A) increased acropetally along the leaves of 5 grass species, which is a unique feature of this growth form. The internal structure of leaves also changed acropetally in order to minimize the pressure gradient across the mesophyll that would otherwise occur as a result of increasing g[subscript]s. The resistance to water movement through the mesophyll represented 80-90% of leaf resistance in six genotypes of Sorghum bicolor L. (Moench). This resistance was most important in controlling g[subscript]s and A when water was readily available, but as soil-moisture decreased it was the efficient transport of water through the xylem that was most important in maintaining plant function. I also investigated the relationship between hydraulic architecture and stomatal responses of grasses to increasing Vapor Pressure Deficit (D). Grasses with a larger proportion of their hydraulic resistance within the xylem were less sensitive to increasing D and plants with high root conductance maintained higher rates of gas exchange D increased. Finally, I investigated the tolerance of grasses to extreme drought events to test if there was a trade-off between drought tolerance and growth in grasses. Plants with drought tolerant leaf traits typically sacrificed the ability to move water efficiently through their leaves. Having drought tolerant leaves did not limit the plants ability to have high rates of gas exchange, and, in fact, the most drought tolerant plants had the high rates of g[subscript]s when expressed on a mass basis. Leaf-level drought tolerance did contribute to species’ occurrence, as the drought intolerant species I studied are not commonly found in low precipitation systems. The results presented here highlight the importance of studying the hydraulic architecture of plants to provide a better understanding of what controls plant function across a range of environmental conditions.