Charles University Faculty of Pharmacy in Hradec Králové Department of Pharmaceutical Botany and Ecology Candidate: Jana Puzyrevská Supervisor: PharmDr. Anna Hošťálková, Ph.D. Title of Thesis: Biological activity of plant metabolites XXXIV. Alkaloids from the herb of Glaucium flavum CRANTZ and their impact on human cholinesterases. Key words: Glaucium flavum Crantz, cataline, N-methyllaurotetanine, norchelidonine, protopine, AChE, BuChE. Alzheimer's disease, the most widespread neurodegenerative disease, causes decrease of cognitive functions and dementia. The most effective therapeutic approach is the application of central cholinesterase inhibitors, which alleviate cholinergic deficit in brain and thus improve memory. Currently, intensive investigation of new active compounds including natural substances is carried on. Within the preliminary testing, alkaloid extract from Glaucium flavum Crantz herb showed promising inhibition of human cholinesterases, so it was selected for further examination. The primary alkaloid extract was acquired from dried flowering herb by extraction with ethanol and subsequent liquid extraction at different pH. This extract was treated by preparative thin layer chromatography. The structure of alkaloids was determined by spectrometric methods (MS, NMR) and their optical...

Hanusová P.: Alkaloids of Amaryllidaceae family: isolation, structural identification, biological activity. III. Diploma thesis, Charles University, Faculty of Pharmacy in Hradec Králové, Department of Pharmaceutical Botany and Ecology, Hradec Králové, 2017. For phytochemical study was selected plant cultivar Narcissus cv. PROFESSOR EINSTEIN. The aim of the work was to isolate Amaryllidaceae alkaloids in pure form and screening of their biological activities. Summary alkaloidal extract was prepared from 34 kg of fresh bulbs and separated by column chromatography. Preparative TLC and crystallization were used for the isolation of substances from subfraction 6/1. Two pure alkaloids of galanthamine structural type were obtained. The alkaloids were identified based on their MS, NMR analysis and optical rotation as narwedine and lycoraminone. Lycoraminone has been isolated for the first time from natural source. Both substances were tested for their acetylcholinesterase, butyrylcholinestease and prolyl oligopeptidase inhibition activity. Anticancer activity against two gastrointestinal cancer cell lines Caco-2 and HT-29 (colorectal adenocarcinoma) and antimalarial activity has been also measured. Unfortunately, none of isolated alkaloids showed some significant activity in biological assays. Keywords:...

Dohnalova A: Alkaloids of Amaryllidaceae family: isolation, structural identification, biological activity. I; Diploma thesis, Charles University, Faculty of Pharmacy in Hradec Králové, Department of Pharmaceutical Botany and Ecology, Hradec Králové, 2017, 64 p. The Amaryllidaceae family includes bulbous, beautifully flowering plants that have been used for thousands of years in traditional medicine. The major chemical compounds found in this particular plant family are alkaloids, namely Amaryllidaceae alkaloids. Until now, more than 500 isoquinoline alkaloids have been discovered, which exhibit a diverse biological activity including antitumor and antibacterial. They are also able to inhibit acetylcholinesterase. The aim of the diploma thesis was to process 34 kg of fresh bulbs of Narcissus cv. PROFESSOR EINSTEIN and to prepare an alkaloidal extract. This extract was further divided by column chromatography to almost 500 fractions which were merged based on TLC into 27 subfractions. The subfractione No. 17 was selected for isolation of at least one pure alkaloid. Preparative TLC was used for the the isolation. One pure compound was obtained in crystalic form which was then subjected to structural analysis by EI-MS and NMR methods. Further studies of biological activities were performed in...

Baková I.: Isolation of alkaloids of the species Magnolia soulangeana Soul.-Bod. and study of their biological activity. Diploma thesis, Charles University, Faculty of Pharmacy in Hradec Králové, Department of Pharmaceutical Botany and Ecology, Hradec Králové, 2017. Key words: Magnolia solulangeana, secondary metabolites, alkaloids, biological activity. Secondary metabolites of plants are responsible for various biological activities. Alkaloids were described as a potentially suitable for Alzheimer's disease therapy (AD) through their inhibition activities against cholinesterases. Nowadays, these substances are important medicine for AD, therefore a screening of herbal drugs is still a current topic. An alkaloid extract of Magnolia × soulangeana flowers was tested in a preliminary testing on anticholinesterase activity. Because of the promising results, it was chosen for an isolation and identification possible effective alkaloids. The extract was separated by a column chromatography using aluminium oxide and a step gradient elution. Alkaloids were isolated by a repeated preparative thin-layer chromatography. Individual alkaloids were identified by a structural analysis (NMR, MS) and then their optical activity was measured. Substances were tested for an inhibition activity against human...

Le mélanome malin (MM) métastatique, un des cancers les plus intrinsèquement résistants aux agents anti-cancéreux et présentant une forte capacité à développer des résistances acquises, constitue un défi thérapeutique. La meilleure compréhension des mécanismes impliqués dans cette chimiorésistance permettrait d'identifier des cibles thérapeutiques ou de guider le choix du traitement pour une meilleure efficacité. Les travaux réalisés durant cette thèse se sont focalisés sur l'identification de nouveaux déterminants moléculaires de la résistance acquise du MM vis-à-vis (i) des vinca-alcaloïdes (VAs, chimiothérapie classique), (ii) des inhibiteurs de MAP kinases (iMAPK, thérapie ciblée). Pour la première étude, un modèle de lignées cellulaires de MM résistantes aux VAs (CAL1R-VAs) a été établi (exposition continue, 12 mois, de la lignée parentale CAL1-wt à la VCR, la VDS ou la VRB : CAL1R-VCR, CAL1R-VDS et CAL1R-VRB respectivement). La comparaison des profils d'expression a permis de distinguer deux groupes de lignées cellulaires (CAL1R-VCR et CAL1R-VDS ; CAL1R-VRB et CAL1-wt), suggérant une résistance différentielle du MM aux VAs : d'une part à la VCR et à la VDS, d'autre part à la VRB. L'analyse des données transcriptomiques par une démarche associant successivement trois méthodes - RMA (Robust Multi-array Average), RDAM (Rank Difference Analysis of Microarrays) et MGSA (model-based gene set analysis) – a permis d'identifier des fonctions cellulaires altérées lors de la sélection des lignées CAL1R-VAs, et donc potentiellement à l'origine de la résistance de ces lignées. Des analyses fonctionnelles in vitro ont permis de confirmer l'implication des lysosomes et de la réponse au stress du réticulum endoplasmique (RE) dans la résistance différentielle des cellules CAL1 aux VAs. Ainsi, une sous-expression des cathepsines B et L (bioinformatique) et une réduction du volume du compartiment acide (in vitro) ont été observées spécifiquement dans le premier groupe de lignées (CAL1R-VCR et CAL1R-VDS), suggérant une sensibilité réduite de ces lignées à la voie lysosomale de l'apoptose. Par ailleurs, l'inhibition de la voie de réponse au stress du RE par l'acide tauroursodésoxycholique (TUDCA) a induit une sensibilisation différentielle de l'ensemble des lignées CAL1 aux VAs, suggérant l'implication de cette voie dans la résistance différentielle primaire et acquise aux VAs. De plus, l'inhibition de la réponse au stress du RE a induit une sensibilisation d'une autre lignée cellulaire de MM, MDA-MB-435, à la VCR et à la VDS mais pas à la VRB. Ainsi, la voie de réponse au stress du RE semble impliquée dans la résistance différentielle du MM aux VAs. Ce mécanisme pourrait mettre en jeu l'autophagie, dont le flux était significativement augmenté dans le premier groupe de lignées. La même démarche d'analyse transcriptomique a été appliquée pour l'étude des mécanismes moléculaires de résistance acquise du MM aux iMAPK. Des lignées cellulaires de MM résistantes aux trois iMAPK majeurs ont été établies par exposition continue de la lignée parentale A375-wt, portant la mutation activatrice BRAF V600E, au vémurafenib (VMF, inhibiteur de BRAF), dabrafenib (DBF, inhibiteur de BRAF), et trametinib (TMT, inhibiteur de MEK): A375R-VMF, A375R-DBF et A375R-TMT respectivement. La comparaison des profils transcriptomiques n'a pas permis de regrouper les lignées résistantes entre elles, suggérant que les mécanismes de résistance au VMF, au DBF ou au TMT sont différents. Ces mécanismes ne seraient donc communs ni à la voie ciblée (MAPK), ni à la cible moléculaire (BRAF ou MEK). L'identification des fonctions cellulaires altérées procurera un rationnel pour l'étude mécanistique de nouveaux déterminants de la résistance du MM aux iMAPK. / Malignant melanoma (MM), one of the most intrinsically resistant cancers to anticancer agents and presenting a strong ability to develop acquired resistance, remains a therapeutic challenge. A better understanding of the mechanisms involved in MM chemoresistance should provide therapeutic targets or guide therapeutic choice for improved efficiency. This thesis has focused on the identification of new molecular determinants of MM acquired resistance to (i) vinca alkaloids (VAs, conventional chemotherapy), and to (ii) MAP kinases inhibitors (MAPKi, targeted therapy). In the first study, MM cell lines resistant to VAs (CAL1R-VAs) were established (continuous exposure, 12 months, of CAL.1-wt parental line to the VCR, VDS or VRB: CAL1R-VCR, CAL1R- VDS and CAL1R-VRB respectively). Comparison of expression patterns led to distinguish two groups of cell lines (CAL1R-VCR and CAL1R-VDS; CAL1R-VRB and CAL.1-wt), suggesting a differential resistance of MM to VAs: one the one hand to VCR and VDS, on the other hand to VRB only. The analysis of transcriptome data by a process involving successively three methods - RMA (Robust Multi-array Average), RDAM (Rank Difference Analysis of Microarrays) and MGSA (model-based gene set analysis) – allowed the identification of functions altered during the resistant cell line selection, and therefore potentially involved in resistance mechanisms of these cell lines. In vitro functional analyzes confirmed the involvement of the lysosomes and of the response to endoplasmic reticulum (ER) stress (unfolded protein response, UPR) in the differential resistance of CAL1 cells to VAs. Thus, an under-expression of cathepsins B and L (bioinformatics), and a reduction of the acidic compartment volume (in vitro) were specifically observed in the first cell group (CAL1R-VCR and CAL1R-VDS), suggesting a reduced sensitivity of these lines to the lysosomal pathway of apoptosis. Furthermore, UPR inhibition using tauroursodeoxycholic acid (TUDCA) induced a differential sensitization of all the CAL1 lines to VAs, suggesting the involvement of this pathway in the primary and acquired differential resistance to VAs. Moreover, TUDCA-inhibition of UPR induced sensitization another MM cell line, MDA-MB-435, to VCR and VDS but not to VRB. Thus, a UPR up-regulation could to be a significant mechanism of differential resistance of MM to VAs. This mechanism could involve autophagy, whose flow was significantly increased in the first group of lines. The same transcriptome analysis strategy was applied to study (ii) the molecular mechanisms of MM acquired resistance to MAPKi. MM cell lines resistant to the three major MAPKi were established by continuous exposure of the parental A375-wt line, carrying the activating mutation BRAF V600E, to vemurafenib (VMF, BRAF inhibitor), dabrafenib (DBF, BRAF inhibitor), or trametinib (TMT, MEK inhibitor): A375R-VMF, A375R-DBF and A375R-TMT, respectively. Comparison of transcriptomic profiles showed separate expression profiles, suggesting that the molecular mechanisms responsible for resistance to VMF, DBF or TMT were different. These mechanisms cannot therefore be common to the targeted pathway (MAPK) or to the molecular target (BRAF or MEK). The identification of the altered cellular functions will provide a rationale for mechanistic studies of new determinants of MM resistance to MAPKi.

Globally, methicillin resistant Staphylococcus aureus (MRSA) has become increasingly difficult to manage in the clinic and new antibiotics are required. The structure activity relationship (SAR) study presented in this thesis forms part of an international collaborative effort to identify potent and selective inhibitors of an MRSA pyruvate kinase (PK) enzyme target. In earlier work the known marine natural product bromodeoxytopsentin (1.6), isolated from a South African marine sponge Topsentia pachastrelloides, exhibited selective and significant inhibition of MRSA PK (IC₅₀ 60 nM). Accordingly bromodeoxytopsentin provided the initial chemical scaffold around which our SAR study was developed. Following a comprehensive introduction, providing the necessary background to the research described in subsequent Chapters, this thesis has been divided into three major parts. Part one (Chapter 2) documents the synthesis of two natural imidazole containing topsentin analogues 1.40, 1.46, five new synthetic analogues 1.58—1.61, 2.104. In the process we developed a new method for the synthesis of topsentin derivatives via selenium dioxide mediated oxidation of N-Boc protected 3-acetylindoles to yield glyoxal intermediates which were subsequently cyclized and deprotected to yield the desired products. Interestingly we were able to demonstrate a delicate relationship between the relative equivalents of selenium dioxide and water used during the oxidation step, careful manipulation of which was required to prevent the uncontrolled formation of side products. Synthetic compounds 1.40, 1.46, 1.58—1.61 were found to be potent inhibitors of MRSA PK (IC₅₀ 238, 2.1, 23, 1.4, 6.3 and 3.2 nM respectively) with 1000-10000 fold selectivity for MRSA PK over four human orthologs. In the second part of this thesis (Chapter 3) we report the successful synthesis of a cohort of previously unknown thiazole containing bisindole topsentin analogues 1.62—1.68 via a Hantzsch thiazole synthesis. Bioassay results revealed that these compounds were only moderate inhibitors of MRSA PK (IC₅₀ 5.1—20 μM) which suggested that inhibitory activity was significantly reduced upon substitution of the central imidazole ring of topsentin type analogues with a thiazole type ring. In addition in Chapter 3 we describe unsuccessful attempts to regiospecifically synthesize oxazole and imidazole topsentin analogues through a similar Hantzsch method. As a consequence of our efforts in this regard we investigated three key reactions in depth, namely the synthesis of 2.2, 3.38, 3.40, 3.41 via α-bromination of 3-acetylindole and the synthesis of indolyl-3-carbonylnitriles 2.13, 3.45—3.47 and α-oxo-1H-indole-3-thioacetamides 3.48—3.51. The investigation of the latter led to the isolation and elucidation of two anomalous N,N-dimethyl-1H-indole-3-carboxamides 3.52 and 3.53. Finally the third part of this thesis (Chapter 4) deals with in silico assessment of the binding of both the imidazole and thiazole containing bisindole alkaloids to the MRSA PK protein which initially guided our SAR studies. In this chapter we reveal that there appears to be no correlation between in silico binding predictions and in vitro MRSA PK inhibitory bioassay data. Superficially it seems that binding energy as determined by the docking program used for these studies correlated with the size of the indole substituents and did not reflect IC₅₀ MRSA PK inhibitory data. Although this led us to computationally explore possible alternative binding sites no clear alternative has been identified.

No description available.

Intramolecular hydroamination represents a potentially general, simple strategy to access various nitrogen heterocycles. While important progress has been accomplished in recent years, six-membered ring formation via alkene hydroamination is typically difficult and limited to terminal alkenes, suggesting that only 2-methylpiperidines can be accessed reliably with current methods. As part of the Beauchemin group efforts on metal-free concerted hydroamination methods, the first part of this thesis describes the development of a Cope-type hydroamination-Meisenheimer rearrangement (CHMR) sequence that is applicable in inter- and intramolecular reactions. Data acquired from optimization on a difficult substrate (coniine) and the successful application of the CHMR sequence to the syntheses of N-norreticuline and 10-desbromoarborescidine are reported. The amination of alkenes is surprisingly scarcely used in the synthesis of complex alkaloids despite its potential for the construction of structurally challenging molecules while avoiding functional group interconversions. Hence, the second part of this thesis describes the studies on a novel amination sequence, consisting of an intermolecular Diels-Alder followed by an intramolecular hydroamination reaction, in the efforts towards the synthesis of biologically active and structurally complex Manzamine A. As such, the synthesis of the model substrates, including the development of a novel family of aminodienes, as well as the assessment of their reactivity towards [4+2] cycloadditions is reported.

The survival and physiology of rainbow trout in alkaline waters was the focus of this thesis. It is known that salmonids have problems with ammonia excretion in alkaline water (Cameron and Heisler, 1983; Wright and Wood, 1985). The first set of studies attempted to increase the survival rates of rainbow trout planted into alkaline lakes by acclimating them to the alkaline conditions before their release. The first field study acclimated rainbow trout to alkaline waters by acidifying the lake water with C0₂ in order to reduce the magnitude of the pH change experienced by the fish. The second field study acclimated rainbow trout to alkaline waters by increasing the alkalinity of the hatchery water in which the fish were held, over a six day period. In both studies the acclimated fish experienced higher survival rates relative to non-acclimated fish. Plasma sodium concentrations ([Na⁺]p1) of the fish were shown to increase, while plasma chloride concentrations decreased. These changes were attributed to an increase in the exchange of external Na⁺ with endogenous H⁺, and the decrease in the exchange of endogenous HC0₃⁻ with external Cl⁻, respectively. The increased [Na⁺]pl may have also been the result of the exchange of plasma ammonium (NH₄⁺) with external Na⁺. The second set of studies investigated the physiological response of rainbow trout to alkaline waters. The first study, the chronic exposure of rainbow trout to alkaline water, showed that trout in hard alkaline water experienced higher survival rates and regulated plasma ammonia and ion concentrations more competently than trout in soft alkaline water. This increased ability to regulate plasma ammonia and ion concentrations was attributed to the possible "reactivation" of the Na⁺/NH₄⁺ exchange. The purpose of the second study, the acute exposure of rainbow trout to alkaline water, was to further investigate the mechanisms that enable fish in hard alkaline water to survive better than fish in soft alkaline water. The possible activity of the Na⁺/NH₄⁺ exchange was again observed in the hard alkaline water. The addition of amiloride to the alkaline hard treatment water increased plasma total ammonia and stabilized [Na⁺]pl′, which supported the "reactivation" of the Na⁺/NH₄⁺ exchange in hard alkaline water. As a result of these studies, the acclimation of rainbow trout to hard alkaline water before being planted into any alkaline body of water was recommended. / Land and Food Systems, Faculty of / Graduate

Bacterial infections remain a significant threat to human health. Due to the emergence of widespread antibiotic resistance, development of novel antibiotics is required in order to ensure that effective treatment remains available. The aim of this study was to isolate and identify the fraction responsible for the antimicrobial activity in Tabernaemontana elegans (Stapf.) root extracts. The active fraction was characterised by thin layer chromatography (TLC) and gas chromatography – mass spectrometry (GC-MS). Antibacterial activity was determined using the broth micro-dilution assay and antimycobacterial activity using the BACTEC radiometric assay. Cytotoxicity of the crude extract and fractions was assessed against primary cell cultures; lymphocytes and fibroblasts; as well as a hepatocarcinoma (HepG2) and macrophage (THP-1) cell line using the Neutral Red uptake and MTT assays. The crude root extracts were found to contain a high concentration of alkaloids (1.2% w/w). GC-MS analysis identified the indole alkaloids, voacangine and dregamine, as major components. Antibacterial activity was limited to the Gram-positive bacteria and Mycobacterium species, with MIC values in the range of 64 – 256 ìg/ml. When combined with antibiotics, additive antibacterial effects were observed. Marked cytotoxicity to all cell lines tested was evident in the MTT and Neutral Red uptake assays, with IC50 values ranging between 1.11 – 9.81 ìg/ml. This study confirms the antibacterial activity of T. elegans and supports its potential for being investigated further for the development of a novel antibacterial compound. / Dissertation (MSc)--University of Pretoria, 2011. / Pharmacology / unrestricted