No description available.

No description available.

No description available.

京都大学 / 新制・課程博士 / 博士(理学) / 甲第23734号 / 理博第4824号 / 新制||理||1690(附属図書館) / 京都大学大学院理学研究科化学専攻 / (主査)教授 依光 英樹, 教授 若宮 淳志, 教授 時任 宣博 / 学位規則第4条第1項該当 / Doctor of Science / Kyoto University / DGAM

京都大学 / 0048 / 新制・課程博士 / 博士(工学) / 甲第21275号 / 工博第4503号 / 新制||工||1700(附属図書館) / 京都大学大学院工学研究科合成・生物化学専攻 / (主査)教授 杉野目 道紀, 教授 村上 正浩, 教授 松原 誠二郎 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DFAM

Boronic acids are attractive synthetic intermediates and have been shown to be effective as inhibitors of various enzymes. In this project, the overarching goal is the selective inhibition of a protease present in the mitochondria known as human ClpXP. To study the potential selective inhibition of Human ClpXP using N-terminal peptidic boronic acid, we have designed a synthetic scheme that includes?-borylation of °,?-unsaturated carbonyl compounds using Cu(I) as catalyst, °-alkylation, saponification/hydrogenation, amidation, and oxidative removal of pinacolyl group with sodium periodate. A simple amidoboronic acid was also synthesized for stability studies. This compound, synthesized in 44% overall yield, could be used as a surrogate for N-terminal peptidic boronic acid to provide basic understanding of the stability of more elaborate N-terminal peptidic boronic acids. During the synthesis of this compound, published deprotection methods were not suitable to deprotect the pinacol group. A two-step protocol for pinacolyl boronic ester deprotection via a diethanolamine protected intermediate was successfully developed with the advantages of mild reaction conditions, tolerance to various functional groups, short reaction time and ease of product isolation. The current results will be useful for the deprotection of other boronic esters, such as pinanediol protected compounds, which are being used extensively in stereoselective synthesis. / Master of Science

In this thesis entitled “Saccharide Recognition - Boronic acids as Receptors in Polymeric Networks” different aspects of boronic acid synthesis, their analysis and incorporation or attachment to different polymeric networks and characterisation thereof were investigated. The following key aspects were considered: • Provision of a variety of different characterised arylboronic acids and benzoboroxoles • Attachment of certain derivatives to nanoparticles and the characterisation of saccharide binding by means of isothermal titration calorimetry and displacement assay (ARS) to enhance the association constant to saccharides at pH 7.4 • Enhancement of selectivity in polymeric systems by means of molecular imprinting using fructose as template and a polymerisable benzoboroxole as functional monomer for the recognition at pH 7.4 (Joined by a diploma thesis of F. Grüneberger) • Development of biomimetic saccharide structures and the development of saccharide (especially glucose and fructose) binding MIPs by using these structures as template molecules. In the first part of the thesis different arylboronic acid derivatives were synthesised and their binding to glucose or fructose was investigated by means of isothermal titration calorimetry (ITC). It could be derived, which is in parallel to the literature, that derivatives bearing a methylhydroxyl-group in ortho-position to the boron (benzoboroxole) exhibit in most cases a two-fold higher association constant compared to the corresponding phenylboronic acid derivative. To gain a deeper understanding NMR spectroscopy and mass spectrometry with the benzoboroxole and glucose or fructose was performed. It could be shown that the exchange rate in terms of NMR time scale is quite slow since in titration experiments new peaks appeared. Via mass spectrometry of a mixture between benzoboroxole and glucose or fructose, different binding stoichiometries could be detected showing that the binding of saccharides is comparable with their binding to phenylboronic acid. In addition, the use of Alizarin Red S as an electrochemical reporter was described for the first time to monitor the saccharide binding to arylboronic acids not only with spectroscopy. Here, the redox behaviour and the displacement were recorded by cyclic voltammograms. In the second part different applications of boronic acids in polymeric networks were investigated. The attachment of benzoboroxoles to nanoparticles was investigated and monitored by means of isothermal titration calorimetry and a colourimetric assay with Alizarin Red S as the report dye. The investigations by isothermal titration calorimetry compared the fructose binding of arylboronic acids and benzoboroxoles coupled to these nanoparticles and “free” in solution. It could be shown that the attached derivatives showed a higher binding constant due to an increasing entropy term. This states for possible multivalent binding combined with a higher water release. Since ITC could not characterise the binding of glucose to these nanoparticles due to experimental restrictions the glucose binding at pH 7.4 was shown with ARS. Here, the displacement of ARS by fructose and also glucose could be followed and consequently these nanoparticles can be used for saccharide determination. Within this investigation also the temperature stability of these nanoparticles was examined and after normal sterilisation procedures (121°C, 20 min.) the binding behaviour was still unchanged. To target the selectivity of the used polymeric networks, molecular imprinting was used as a technique for creating artificial binding pockets on a molecular scale. As functional monomer 3-methacrylamidobenzoboroxole was introduced for the recognition of fructose. In comparison to polymers prepared with vinylphenylboronic acid the benzoboroxole containing polymer had a stronger binding at pH 7.4 which was shown for the first time. In addition, another imprinted polymer was synthesised especially for the recognition of glucose and fructose employing biomimetic saccharide analogues as template molecule. The advantage to use the saccharide analogues is the defined template-functional monomer complex during the polymerisation which is not the case, for example, for glucose-boronic acid interaction. The biomimetic character was proven through structural superimposition of crystal structures of the analogues with already described crystal structures of boronic acid esters of glucose and fructose. A molecularly imprinted polymer was synthesised with vinylphenylboronic acid as the functional monomer to show that both glucose and fructose are able to bind to the polymer which was predicted by the structural similarity of the analogues. The major scientific contributions of this thesis are • the determination of binding constants for some, not yet reported saccharide – boronic acid / benzoboroxole pairs, • the use of ARS as electrochemical reporter for saccharide detection, • the thermodynamic characterisation of a saccharide binding nanoparticle system containing benzoboroxole and functioning at pH 7.4, • the use of a polymerisable benzoboroxole as functional monomer for saccharide recognition in neutral, aqueous environments • and the synthesis and utilisation of biomimetic saccharide analogues as template molecules especially for the development of a glucose binding MIP. / Die vorliegende Arbeit beschäftigte sich mit der Synthese verschiedener Boronsäurederivate und deren Charakterisierung und Anbindung oder Einbau in polymeren Netzwerken. Die synthetisierten Polymere werden charakterisiert bezüglich ihrer Morphologie und besonders hinsichtlich ihrer Saccharidbindung. Im Wesentlichen wurden die folgenden Aspekte bearbeitet: • Bereitstellung einer Reihe von verschiedenen Arylboronsäuren und Benzoboroxolderivaten • Modifizierung von Nanopartikeln mit verschiedenen Derivaten aus der Bibliothek mit dem Ziel die Bindingkonstanten zu Monosacchariden bei pH 7.4. zu erhöhen. Dabei werden isothermale Titrationskalorimetrie und ein spektroskopischer Verdrängungsassay (Alizarin Rot S) zum Bindungsnachweis verwendet. • Erhöhung der Selektivität von Polymeren mittels molekularen Prägens von Fruktose als Matrizenmolekül. Durch den Einsatz eines polymerisierbaren Benzoboroxolderivatives konnte die Anbindung bei pH 7.4 stattfinden (Dieser Teil der Arbeit wurde durch eine Diplomarbeit von F. Grüneberger unterstützt). • Entwicklung von biomimetischen saccharidanalogen Strukturen, die als Matrizenmoleküle während des molekularen Prägens eingesetzt werden, um ein Polymer für die Anbindung von Monosacchariden wie etwa Fruktose oder Glukose zu generieren. Im ersten Teil der Arbeit wurde die Synthese und Charakterisierung von verschiedenen Boronsäurederivaten beschrieben. Die Charakterisierung der Bindungskonstanten wurde mittels isothermaler Titrationskalorimetrie durchgeführt. Dabei konnte im Einklang mit der Literatur gezeigt werden, dass Derivative, die zusätzlich mit einer Methylhydroxygruppe in ortho-Position zum Bor (Benzoboroxol) derivatisiert sind, eine meist zweifach höhere Bindungskonstante als gleich substituierte Arylboronsäurederivate aufweisen. Durch 1H-NMR-Spektroskopie und Massenspektrometrie mit Benzoboroxol und Glukose oder Fruktose konnten die Bindung weiter charakterisiert werden. Dabei zeigten die Ergebnisse der 1H-NMR-Spektroskopie, dass die Bindung bezogen auf NMR-Zeitskalen recht langsam stattfindet, da es zu einer Verbreiterung der Peaks kommt. Die Ergebnisse der Massenspektrometrie zeigen, dass hinsichtlich der Stöchiometrie der Binding verschiedene Komplexe möglich sind, was in ähnlicher Weise für Phenylboronsäure schon gezeigt wurde. Zusätzlich wurde in diesem Teil der Arbeit wurde die Elektrochemie von Alizarin Rot S untersucht, um den Farbstoff, der spektroskopisch schon für den Bindungsnachweis zwischen einem Boronsäurederivat und verschiedenen Zuckern beschrieben ist, auch elektrochemisch zu nutzen. Im zweiten Teil der Arbeit wurden verschiedene Anwendungen von den charakterisierten Boronsäuren in polymeren Netzwerken beschrieben. Dabei wurde zunächst ein Polystyrollatex mit Benzoboroxol modifiziert und die Bindung von Glukose oder Fruktose mittels isothermaler Titrationskalorimetrie und einem spektroskopischen Farbassay untersucht. Die Untersuchungen mittels isothermaler Titrationskalorimetrie (ITC) wurden vergleichend zu frei in Lösung befindlichem Benzoboroxol durchgeführt. Es wurde eine höhere Bindungskonstante für die modifizierten Nanopartikel ermittelt, was auf die Erhöhung der Entropie im System zurückzuführen ist. Dies kann durch eine mutivalente Bindung und einer einhergehenden erhöhten Wasserfreisetzung erklärt werden. Da es nicht möglich war, die Glukosebindung mittels ITC zu verfolgen, wurde zusätzlich ein spektroskopischer Assay bei pH 7.4. durchgeführt. Bei diesem wird die Bindung von Fruktose oder Glukose durch Freisetzung von Alizarin Rot S verfolgt. In diesem Zusammenhang konnte auch gezeigt werden, dass die Nanopartikel nach Sterilisation bei 121°C für 20 Minuten eine vergleichbare Bindung des Farbstoffes zeigen, was die Temperaturstabilität der Partikel unterstreicht. Da in diesem System die Bindung von Zuckern abhängig von der Affinität der Zucker zu den Boronsäuren bestimmt wird, wurden molekular geprägte Polymere synthetisiert, die eine Selektivität für bestimmte Zucker zeigen. Als Funktionsmonomer wurde 3-Methacrylamidobenzboroxol verwendet. Im Vergleich zu Polymeren, die mit 3-Vinylphenylboronsäure als literaturbekanntes Funktionsmonomer synthetisiert worden sind, zeigt sich bei pH 7.4 eine höhere Bindung von Fruktose an Benzoboroxolpolymere. In einem anderen geprägten Polymer wurden biomimetische (zuckeranaloge) Substanzen als Matrizenmolekül verwendet. Der Vorteil dieser Substanz ist die Bildung eines definierten Boronsäureesters, der als Templat-Funktionsmonomerkomplexes einpolymerisiert wird. Im Gegensatz dazu weist beispielsweise ein Boronsäureester der Glukose keine definierte Struktur auf. Der biomimetische Charakter wurde durch strukturelle Überlagerung mit schon publizierten Kristallstrukturen von Boronsäureestern von Glukose und Fruktose gezeigt. Das zugehörige molekular geprägte Polymer wurde mit Vinylphenylboronsäure synthetisiert und zeigt eine Bindung von Glukose und Fruktose, was durch die Strukturüberlagerungen vorhergesagt wurde. Zusammenfassend sind die wesentlichen wissenschaftlichen Ergebnisse: • Bindungskostanten von neuen Zucker-Benzoboroxolpaaren, • Eignung von ARS als elektrochemische Nachweissubstanz der Saccharidbindung • Die thermodynamische Charakterisierung der Bindung von Fruktose oder Glukose an Nanopartikel, die Benzoboroxol - modifziert sind und so bei pH 7.4 Zucker binden können • Einsatz von Benzoboroxol als Funktionsmonomer • die Synthese und Nutzung von biomimetischen zuckeranalogen Matrizenmolekülen für die Entwicklung von molekular geprägten Polymeren für die Glukosebindung.

Cell surface saccharides are involved in a variety of essential biological events. Fluorescent sensors for saccharides can be used for detection, diagnosis, analysis and monitoring of pathological processes. The boronic acid functional group is known to bind strongly and reversibly to compounds with diol groups, which are commonly found on saccharides. Sensors that have been developed for the purpose of saccharide recognition have shown great potential. However, they are very hydrophobic and this lack of essential water-solubility makes them useful in biological applications. The first section of this dissertation details the process of developing water-soluble saccharide sensors that change fluorescent properties upon binding to saccharides. The second section of the dissertation focuses on the development of DNA-minor groove binders as antiparasitical agents. Parasitical diseases comprise some of the world’s largest health problems and yet current medication and treatments for these parasitical diseases are often difficult to administer, costly to the patients, and have disruptive side effects. Worse yet, these parasites are developing drug resistance, thus creating an urgent need for new treatments. Dicationic molecules constitute a class of antimicrobial drug candidates that possess high activity against various parasites. The second section details the development of a series of di-cationic agents that were then screened in in vitro activities against parasitical species.

This thesis deals with the post-polymerization functionalization of a pH-responsive poly(styrene)-b-poly(4-vinyl pyridine)-b-poly(ethylene oxide) triblock terpolymer with stimuli responsive and diol-binding 2-bromomethyl-4-fluorophenylboronic acid and 2- bromomethyl-phenylboronic acid suitable for biomedical applications. A reproducible method of quaternization of poly(4-vinyl pyridine) block with prescriptible quaternization ratio was developed and the reaction yield was analyzed by 11 B, 1 H NMR and infrared spectroscopy. A reproducible self-assembly protocol for stable nanoparticles from functionalized stimuli-responsive triblock terpolymer was found, and the nanoparticles were studied by static, dynamic and electrophoretic light scattering, and cryogenic transmission electron microscopy. Fluorescence and UV-VIS spectroscopy measurements were performed for description of boron-ester linkages formation and hydrolysis with model drug Alizarin as a study of encapsulation and release reactions together with sugar sensing reactions for potential drug delivery.

Silicone polymers and network-materials have proven extremely useful in a variety of applications owing to their superb properties when compared to carbon-based polymers. Polysiloxanes containing functional groups other than simple alkyl moieties have allowed for further manipulations of pendant groups along the polymer backbone leading to a greater range of possible chemical transformations, as well as changes in physical/interfacial properties. One aspect of functional polymers that has yet to be explored with respect to primarily silicone-based systems is that of stimuli-responsive materials. In order for this unique application to work, silicones must be functionalized with a group or groups that can influence the polymer’s properties based on that group’s response to specific external stimuli. Boronic acids represent one such group, wherein the most common stimuli used to affect changes in ionization state and solubility are pH and diol-binding. Boronic acids are also capable of forming weak hydrogen-bonded dimers with other boronic acids, and dynamic covalent bonds with Lewis bases. It is proposed that the covalent attachment of boronic acids and their derivatives onto silicones could lead to stimuli-responsive silicone materials. Herein, the synthesis of silicone-boronic acids and their protected boronic esters is described. The simple two-step method involving boronic acid protection followed by hydrosilylation has led to a variety of molecules differing in molecular weight and three-dimensional geometry through the use of commercially available hydride-functional silicones. Initial results regarding saccharide binding selectivity and the impacts on silicone solubility are provided. The unique interfacial behaviour of silicone-boronic esters and their propensity to form self-assembled, crosslinked films at an air/water interface are also reported. Using several different diol protecting groups and a variety of aqueous sub-phases, the mechanism for changes in physical properties as well as crosslinking were revealed. Finally, the production of new thermoplastic silicone elastomers from silicone-boronic esters and amine-containing molecules is discussed. The Lewis acid/Lewis base complexation that occurs between nitrogen and boron can provide enough strength to produce robust, yet recyclable, silicone elastomers without the use of catalyst or solvent. Elastomers can be easily dissolved and reformed through the introduction and removal of a mono-functional Lewis base. The impact of crosslink density, controlled by the quantities and molecular weights of each polymer component used, on physical characteristics is reported. / Thesis / Doctor of Philosophy (PhD)