abstract: When ferrite materials are used in antenna designs, they introduce some interesting and unique performance characteristics. One of the attractive features, for example, is the ability to reconfigure the center frequency of the antenna. In addition, ferrite materials also introduce a number of challenges in the modeling and simulation of such antennas. In order for the ferrite material to be useful in an antenna design, it usually is subjected to an external magnetic field. This field induces the internal magnetic field inside the ferrite material. The internal field plays a pivotal role in the radiation characteristics of the antenna. Thus, from the numerical point of view, accurate computation of this field is critical to the overall accuracy of the analysis. Usually the internal field is non-uniform and its computation is often a rather complex and non-trivial task. Therefore, to facilitate the modeling, simplifying assumptions, which introduce some kind of averaging, are often made. In this study, ferrite-loaded cavity-backed slot antennas are used to demonstrate that averaging procedures can lead to very unsatisfactory results. For instance, it is common practice to assume that the external field is uniform by averaging its distribution. One of the pivotal points in this study is the demonstration that the external magnetic field plays a very significant role and should be included in the modeling without averaging, if the accurate results are to be attained. Results presented in this study clearly support this argument. A procedure which avoids such averaging is presented and verified by comparing simulations with measurements. In contrast to the previous formulations, the modeling methodology developed in this dissertation leads to accurate results which compare very well with measurements for both uniform and non-uniform field distributions. The utility of this methodology is especially evident for the case when the magnetic field is severely non-uniform. / Dissertation/Thesis / Ph.D. Electrical Engineering 2012

Philosophiae Doctor - PhD / The study explored how contextual Bible study (CBS) contributes to the understanding of survival sex in the context of food insecurity. Even though South Africa is a food secure nation, a large percentage of the population is food insecure. While researchers focus significantly on transactional sex and other forms of sexual exchange, survival sex, particularly in the context of food insecurity has not been extensively or adequately researched from the South Africa perspective. CBS as a communal, participatory, collaborative and empowering process is designed as a literary platform upon which community concerns and social justice issues are addressed. Through CBS, conducted with a group of purposefully selected Christian women, the factors that drive survival sex in the context of food insecurity in the Msunduzi Municipality was explored.

The multi-reference correlation consistent composite approach (MR-ccCA) was designed to reproduce the accuracy of more computationally intensive ab initio quantum mechanical methods like MR-ACPF-DK/aug-cc-pCV?Z-DK, albeit at a significantly reduced cost. In this dissertation, the development and applications of the MR-ccCA method and a variant of its single reference equivalent (the relativistic pseudopotential ccCA method) are reported. MR-ccCA is shown to predict the energetic properties of reactive intermediates, excited states species and transition states to within chemical accuracy (i.e. ±1.0 kcal mol 1) of reliable experimental values. The accuracy and versatility of MR-ccCA are also demonstrated in the prediction of the thermochemical and spectroscopic properties (such as atomization energies, enthalpies of formation and adiabatic transition energies of spin-forbidden excited states) of a series of silicon-containing compounds. The thermodynamic and kinetic feasibilities of the oxidative addition of an archetypal arylglycerol ?-aryl ether (?-O-4 linkage) substructure of lignin to Ni, Cu, Pd and Pt transition metal atoms using the efficient relativistic pseudopotential correlation consistent composite approach within an ONIOM framework (rp-ccCA-ONIOM), a multi-level multi-layer QM/QM method formulated to enhance the quantitative predictions of the chemical properties of heavy element-containing systems larger than hitherto attainable, are also reported.

No / The reactions of ionised pyridazine, aminopyrazine and aminopyridine and the corresponding ¿-distonic ions are examined by a combination of tandem mass spectrometric techniques, including analysis of metastable ion (MI), collision induced dissociation and neutralisation¿reionisation mass spectra (NRMS). Further insight into the relative stability and energy barriers towards tautomerism of each ionised heterocycle with its ¿-distonic isomer is obtained by computational methods. In all these systems, both the conventional radical-cation and the ¿-distonic tautomer are stable species which exist in discrete energy wells, with a significant barrier towards their interconversion. Although each ¿-distonic ion is sufficiently stable to survive neutralisation¿reionisation, the conventional ionised heterocycle is more stable in each case. The possibility of investigating proton-transport catalysis in the tautomerism of these ionic systems is discussed.

Este estudo se propôs a avaliar o efeito do gás sulfídrico (H2S), produzido endogenamente em mamíferos, na sinovite induzida pela injeção intra-articular de carragenina (CGN) no joelho de ratos Wistar (250 g). Ratos foram tratados (-60 min) com indometacina, o inibidor da cistationina <font face=\"Symbol\">g-liase DL-propargilglicine (PGly) ou doador de H2S reagente de Lawesson ( LR).Os parâmetros funcionais e bioquímicos foram avaliados 4h após. Ratos com sinovite exibiram dor, alodinia e edema articular. Na cavidade articular foram mensurados níveis elevados de neutrófilos (> MPO), nitração de resíduos protéicos (3-NT), atividade da iNOS, NOx-, caspase-1, IL-1<font face=\"Symbol\">&#946 e via NF-<font face=\"Symbol\">kB. O LR ou indometacina, mas não PGly, reduziu significativamente a nocicepção, edema e marcadores inflamatórios, exceto iNOS, NOx-, 3-NT e NF-<font face=\"Symbol\">kB. A PGly não modificou a dor e inflamação, mas aumentou o numero de macrófagos e atividade da iNOS (NOx-) e AP-1. Conclui-se que, enquanto a administração exógena do LR produz efeitos antiinflamatórios e anti-nociceptivos, o H2S endógeno exerce pouco efeito anti-sinovite. / In this study we evaluated the effects of exogenous and endogenous H2S on Wistar rat knee synovitis induced by the intra-articular injection of carrageenan (CGN). One hour prior to CGN injection, Rats were pre-treated with indomethacin, an inhibitor of H2S formation (DL-propargylglycine) or an H2S donor Lawessons reagent (LR). CGN evoked knee inflammation, as characterized by impaired gait, secondary allodynia of the hindpaw, joint swelling, neutrophil infiltration, increased MPO, 3-NT residues, inducible NOS (iNOS) activity and NOx-, caspase-1 and NF-<font face=\"Symbol\">kB activation. Pretreatment with LR or indomethacin significantly attenuated the pain and all the inflammatory / biochemical changes, except for the increased iNOS activity, NOx- and 3-NT. PGly potentiated synovial iNOS activity (and NOx-), enhanced macrophage infiltration and AP-1 activation, but had no effect on oedema and pain. Whereas exogenous H2S delivered to the knee joint can produce a significant anti-inflammatory and anti-nociceptive effect, locally produced H2S exerts little immunomodulatory effect.

H2S é um gasotransmissor com atua regulando processos fisiológicos e fisiopatológicos. É sintetizado principalmente pelas enzimas cistationinagama-liase (CSE) e cistationina beta-sintase (CBS), ambas dependentes do co-fator 5-fosfato de pirodoxal, e que utilizam o L-cisteína como substrato. Essas enzimas estão presentes no fígado. O camundongo knockout para CBS (CBS KO) apresenta fenótipo de homocistinúria, ou seja, além da homocisteinemia apresenta estresse oxidativo, fibrose e esteatose hepática. Ademais, há estudos in vitro sugerindo um papel desse gás reduzindo a captação de glicose hepática. A hipótese desse projeto é que haja redução precoce da produção de H2S pelo fígado de camundongos alimentados com dieta hiperlipídica (DHL) e esse seja um evento anterior à instalação do fígado gorduroso ou DGHNA associada à obesidade induzida pela DHL, DIO. Para isso, avaliamos a evolução ponderal, consumo alimentar e calórico diários, a tolerância a glicose e a insulina (GTT, ITT e Kitt), a morfohistologia hepática com corantes HE e picrocirius red, expressão proteica e gênica das enzimas CBS e CSE, a quantificação do conteúdo de triglicérides, a deteção de F4/80 e a atividade de enzimas antioxidantes (catalase, GPx e arginase) em amostras de fígado de camundongos machos C57Bl6 alimentados com a DHL por 5 períodos distintos (10, 20, 40, 60 e 80 dias de dieta). Detectamos aumento da massa corporal final a partir de 20 dias de DHL. O consumo alimentar diário foi menor nos animais com a DHL, porém com maior consumo calório do que os respectivos controles. A glicemia basal foi maior nos animais com DHL desde os 10 dias, com exceção o grupo com 40 dias. Houve maior intolerância à glicose desde 10 dias de DHL seguida de resistência à insulina a partir de 20 dias de DHL. Foi detectada presença de vacúolos intracelular nos hepatócitos a partir de 20 dias de DHL, no entanto, a presença de hepatócitos comprometidos foi de aproximadamente 2% aos 20 dias da DHL, cerca de 5% aos 40 dias da DHL e aproximadamente 60% com 60 e 80 dias da DHL. Aos 80 dias de DHL foi detectada balonização de hepatócitos, presença de infiltrado inflamatório identificado pelo aumento da marcação com F4/80, maior detecção de fibras colágenas nos espaços vasculares e aumento da atividade da enzima sérica AST. Houve redução para aproximadamente 50% da produção do H2S nas amostras de fígado dos animais a partir de 40 dias da DHL, porém sem relação clara com as modificações detectadas na expressão das enzimas CBS e CSE. Diante desses dados, concluímos que a DHL leva à intolerância à glicose, seguida de aumento da massa corporal e resistência ao efeito hipoglicemiante da insulina e que o desenvolvimento de fígado gorduroso é um evento mais tardio. Vimos que o espectro da DGHNA desenvolvida apresenta características de esteato-hepatite incipiente, com balonização dos hepatócitos, infiltrado inflamatório presente, discreto aumento de deposição de fibras colágenas e aumento da enzima hepática circulante AST. A redução da produção do gás apareceu após a instalação da resistência à insulina, mas anterior ao estabelecimento da DGHNA. Portanto, concluímos que a alteração na produção hepática do H2S pode ser um evento precoce associado ao desenvolvimento da DGHNA e que merece ser investigado seu potencial papel na progressão de estatose a EHNA com fibrose e cirrose. No entanto, será importante buscar um outro modelo animal para estudo dessa evolução. / Hydrogen sulfide (H2S) is a gaseous signaling molecule that regulates a variety of physiological and pathophysiological processes. It is primarily synthesized by cystathionine-gamma-lyase (CSE) and cystathionine beta-synthase (CBS), which are expressed in the liver, require 5\'-pyrodoxal phosphate as a co-factor, and use L-cysteine as a substrate. Interestingly, CBS knockout (CBS KO) mice present homocystinuria and associated homocysteinemia, as well as oxidative stress, fibrosis and hepatic steatosis. Furthermore, in vitro studies suggest that this gas reduces hepatic glucose uptake. It was hypothesized that mice fed a high fat diet (HFD) would display an early reduction H2S production by the liver and that this event would occur prior to the establishment of fatty liver or NAFLD, which is associated with diet induced obesity (DIO). Towards the goal of gaining a better understanding of H2S production during the onset and progression of DIO, male C57B16 mice were fed a HFD for 10, 20, 40, 60 or 80 days. During the experimental period, weight evolution, daily food and caloric intake, as well as glucose and insulin tolerance (GTT, ITT and Kitt) were evalauted. At the end of each time period hepatocyte morphology was assessed by HE and picrocirius red staining, CBS and CSE gene and protein expression were evaluated, triglyceride content was quantified, F4/80 antigen was detected and antioxidant enzyme (catalase, GPx and arginase) activites were determined. The results showed that mice fed a HFD for 20 days or longer presented an increase in final body weight. All of the HFD groups presented reduced daily food intake, but higher caloric intake, when compared to their respective controls. All of the animals fed a HFD had increased basal glycemia levels, with the exception of the group fed the diet for 40 days. Reduced glucose tolerance and insulin resistance were observed after consuming the HFD for 10 and 20 days, respectively. Intracellular vacuoles were detected in the hepatocytes after 20 days of the HFD. The amount of compromised hepatocytes increased from 2% after 20 days of the HFD, to about 5% after 40 days, to approximately 60% after 60 and 80 days. After consuming the HFD for 80 days, there was an observed ballooning of hepatocytes, increased F4/80 detection indicating the presence of inflammatory infiltrates, increased collagen fiber detection in the vascular spaces, and increased serum AST activity. There was a ~50% reduction in H2S production in the liver samples from animals fed a HFD for 40 days; however, there was no clear relationship with the alterations detected in CBS and CSE gene or protein expression. Based on the results, it was concluded that an HFD promotes glucose intolerance, followed by increased body mass and insulin resistance and that the development of fatty liver occurs later. Additionally, the spectrum of the developed NAFLD presented incipient steatohepatitis characteristics, such as: hepatocyte ballooning, inflammatory infiltrate, a slight increase in collagen fiber deposition, and an increase in circulating liver AST levels. The reduction in H2S gas production appeared after the installation of insulin resistance, but prior to the establishment of NAFLD. Therefore, we conclude that alterations in hepatic H2S production may be an early event associated with the onset of NAFLD and that its potential role in the progression of steatosis and NASH with fibrosis and cirrhosis deserves to be investigated. However, it will be important to evaluate this evolution in other animal models.

Este estudo se propôs a avaliar o efeito do gás sulfídrico (H2S), produzido endogenamente em mamíferos, na sinovite induzida pela injeção intra-articular de carragenina (CGN) no joelho de ratos Wistar (250 g). Ratos foram tratados (-60 min) com indometacina, o inibidor da cistationina <font face=\"Symbol\">g-liase DL-propargilglicine (PGly) ou doador de H2S reagente de Lawesson ( LR).Os parâmetros funcionais e bioquímicos foram avaliados 4h após. Ratos com sinovite exibiram dor, alodinia e edema articular. Na cavidade articular foram mensurados níveis elevados de neutrófilos (> MPO), nitração de resíduos protéicos (3-NT), atividade da iNOS, NOx-, caspase-1, IL-1<font face=\"Symbol\">&#946 e via NF-<font face=\"Symbol\">kB. O LR ou indometacina, mas não PGly, reduziu significativamente a nocicepção, edema e marcadores inflamatórios, exceto iNOS, NOx-, 3-NT e NF-<font face=\"Symbol\">kB. A PGly não modificou a dor e inflamação, mas aumentou o numero de macrófagos e atividade da iNOS (NOx-) e AP-1. Conclui-se que, enquanto a administração exógena do LR produz efeitos antiinflamatórios e anti-nociceptivos, o H2S endógeno exerce pouco efeito anti-sinovite. / In this study we evaluated the effects of exogenous and endogenous H2S on Wistar rat knee synovitis induced by the intra-articular injection of carrageenan (CGN). One hour prior to CGN injection, Rats were pre-treated with indomethacin, an inhibitor of H2S formation (DL-propargylglycine) or an H2S donor Lawessons reagent (LR). CGN evoked knee inflammation, as characterized by impaired gait, secondary allodynia of the hindpaw, joint swelling, neutrophil infiltration, increased MPO, 3-NT residues, inducible NOS (iNOS) activity and NOx-, caspase-1 and NF-<font face=\"Symbol\">kB activation. Pretreatment with LR or indomethacin significantly attenuated the pain and all the inflammatory / biochemical changes, except for the increased iNOS activity, NOx- and 3-NT. PGly potentiated synovial iNOS activity (and NOx-), enhanced macrophage infiltration and AP-1 activation, but had no effect on oedema and pain. Whereas exogenous H2S delivered to the knee joint can produce a significant anti-inflammatory and anti-nociceptive effect, locally produced H2S exerts little immunomodulatory effect.

The chloride/proton antiporter ClC-5 is primarily expressed in the kidney where it aids in re-absorption of proteins from the glomerular filtrate. Functional disruption of ClC-5 causes Dent’s Disease – a renal condition characterized by proteinuria and kidney failure in a third of all cases. The majority of disease-causing mutations translate into premature truncations of the carboxy-terminal (Ct) region of ClC-5 and are predicted to disrupt the protein-protein interactions mediated by this domain. In this thesis, direct ATP binding to the two cystathionine β-synthase (CBS) domains of ClC-5 was demonstrated. ATP binding enhanced the global compactness of the ClC-5 Ct region likely through a clamping motion of the CBS domains around the nucleotide. Along with ATP, the sodium proton exchange regulatory factor 2 (NHERF2) also binds ClC-5; however, the molecular mechanism behind this interaction was unknown as ClC-5 lacked the PDZ binding motif traditionally localized at the Ct end of bait proteins. Here, we also identified a class I PDZ binding motif (657-660; TSII) within the internal sequence of ClC-5. Despite the buried position of this motif in the Ct peptide’s X-ray crystal structure (PDB: 2J9L), the high propensity of this region for dynamic flexibility prompted us to test whether it could mediate NHERF2 interactions. In support of this hypothesis, we demonstrated that the motif is transiently available to interact directly with NHERF2 in vivo and to enable an enhancement in receptor-mediated endocytosis in mammalian cells. Collectively, these results gave further evidence that the intracellular Ct region of ClC-5 serves as a hub to mediate interactions essential for its maturation, stability, and trafficking in renal epithelium, as well as providing further insights into the molecular basis of Dent’s Disease.

The chloride/proton antiporter ClC-5 is primarily expressed in the kidney where it aids in re-absorption of proteins from the glomerular filtrate. Functional disruption of ClC-5 causes Dent’s Disease – a renal condition characterized by proteinuria and kidney failure in a third of all cases. The majority of disease-causing mutations translate into premature truncations of the carboxy-terminal (Ct) region of ClC-5 and are predicted to disrupt the protein-protein interactions mediated by this domain. In this thesis, direct ATP binding to the two cystathionine β-synthase (CBS) domains of ClC-5 was demonstrated. ATP binding enhanced the global compactness of the ClC-5 Ct region likely through a clamping motion of the CBS domains around the nucleotide. Along with ATP, the sodium proton exchange regulatory factor 2 (NHERF2) also binds ClC-5; however, the molecular mechanism behind this interaction was unknown as ClC-5 lacked the PDZ binding motif traditionally localized at the Ct end of bait proteins. Here, we also identified a class I PDZ binding motif (657-660; TSII) within the internal sequence of ClC-5. Despite the buried position of this motif in the Ct peptide’s X-ray crystal structure (PDB: 2J9L), the high propensity of this region for dynamic flexibility prompted us to test whether it could mediate NHERF2 interactions. In support of this hypothesis, we demonstrated that the motif is transiently available to interact directly with NHERF2 in vivo and to enable an enhancement in receptor-mediated endocytosis in mammalian cells. Collectively, these results gave further evidence that the intracellular Ct region of ClC-5 serves as a hub to mediate interactions essential for its maturation, stability, and trafficking in renal epithelium, as well as providing further insights into the molecular basis of Dent’s Disease.

Made available in DSpace on 2016-04-01T17:54:43Z (GMT). No. of bitstreams: 0 Previous issue date: 2007-08-31. Added 1 bitstream(s) on 2016-04-01T18:00:22Z : No. of bitstreams: 1 000505957.pdf: 1448129 bytes, checksum: ef6c3d75951b3a630e2efdba48bcb784 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / O desenvolvimento de modelos numéricos para simulação de escoamentos tem se dado em diversos aspectos: desde os métodos de acoplamento entre pressões e velocidades até as técnicas de estabilização da solução. Neste contexto, este trabalho se propõe a implementar e avaliar o comportamento de um destes algoritmos, o CBS, utilizando-o na simulação de um escoamento isotérmico de fluido incompressível. Para tanto, foram utilizados variantes do esquema de solução com relação à discretização no tempo, com os métodos explícito e semi-implícito, além de algumas outras alterações na discretização no espaço e nos termos de estabilização. A discretização geral do problema foi feita com o método dos elementos finitos utilizando-se uma malha formada por elementos bilineares. O algoritmo e suas variações foram avaliados através de uma série de resultados, para diversos valores do número de Reynolds, de um problema clássico: a cavidade recirculante. Desta forma, foi possível mostrar que todas as variações da solução usando a malha estabelecida apresentaram concordância satisfatória com os resultados da literatura. Além disto, verificou-se que a omissão do termo característico não apresentou diferenças significativas nos resultados para os valores de número de Reynolds testados. Os resultados mostraram também que o método semi-implícito converge com um menor número de incrementos de tempo que o método explícito. / The development of numerical models for fluid flow simulation occurred at many aspects: since coupling methods between pressures and velocities until stabilization techniques. In this context, this work intends to implement and evaluate one algorithm behavior, the CBS, used in a simulation of incompressible and isothermal flows. This work also uses the explicit and semi-implicit methods of the time discretization scheme and some others changes in space discretization and stabilization terms for tests with algorithm. The discretization technique used is the finite element method with the mesh formed by bilinear elements. The algorithm's changes were evaluated using results for several Reynold's number in a classic problem: the lid-driven cavity. All the changes in solution algorithm with the used mesh show good agreement with other results from bibliography. It was verified too, that the omission of characteristics term didn't present significant differences in results with Reynold's number tested. It was observed yet that the solution code using the semi-implicit method converges with less time steps than the explicit one.