We recently reported results from a high-throughput screening effort that identified 235 inhibitors of the Escherichia coli GroEL/ES chaperonin system [Bioorg. Med. Chem. Lett. 2014, 24, 786]. As the GroEL/ES chaperonin system is essential for growth under all conditions, we reasoned that targeting GroEL/ES with small molecule inhibitors could be a viable antibacterial strategy. Extending from our initial screen, we report here the antibacterial activities of 22 GroEL/ES inhibitors against a panel of Gram-positive and Gram-negative bacteria, including E. coli, Bacillus subtilis, Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter cloacae. GroEL/ES inhibitors were more effective at blocking the proliferation of Gram-positive bacteria, in particular S. aureus, where lead compounds exhibited antibiotic effects from the low-lM to mid-nM range. While several compounds inhibited the human HSP60/10 refolding cycle, some were able to selectively target the bacterial GroEL/ES system. Despite inhibiting HSP60/10, many compounds exhibited low to no cytotoxicity against human liver and kidney cell lines. Two lead candidates emerged from the panel, compounds 8 and 18, that exhibit >50-fold selectivity for inhibiting S. aureus growth compared to liver or kidney cell cytotoxicity. Compounds 8 and 18 inhibited drug-sensitive and methicillin-resistant S. aureus strains with potencies comparable to vancomycin, daptomycin, and streptomycin, and are promising candidates to explore for validating the GroEL/ES chaperonin system as a viable antibiotic target.

As proteínas de choque térmico (Hsp) apresentam importantes funções homeostáticas e podem induzir respostas imunológicas tanto inflamatórias como reguladoras. Por essas propriedades, as Hsp e seus peptídeos têm grande potencial como agentes imunomoduladores. Neste estudo, o nosso objetivo foi identificar peptídeos da Hsp60 com potencial imunorregulador, a partir da análise de sua capacidade de modificar, in vitro a expressão de genes imunorreguladores (REGULA) ou inflamatórios (INFLAMA) em células mononucleares do sangue de indivíduos sadios. A análise desse painel REGULA/INFLAMA nos mostrou que os principais peptídeos potencialmente imunorreguladores estão presentes na região N-terminal da Hsp60. Selecionamos os 3 peptídeos que mostraram as maiores razões REGULA/INFLAMA (N2, N6 e N7) para serem testados nos demais experimentos. A análise das citocinas induzidas pelos peptídeos nos mostrou que existe correspondência entre a presença do RNA mensageiro e a proteína produzida e, o peptídeo N7 induziu uma alta razão IL-10/IFN-. Os peptídeos selecionados interagiram diretamente com linfócitos T purificados, o que mostra que a atividade dos peptídeos da Hsp60 independe de APC. Apesar de diferenças entre o efeito na população celular heterogênea de PBMC e na mais homogênea de linfócitos T, os peptídeos da Hsp60 induziram um predomínio de modificações REGULA com indução sustentada de Foxp3 e GATA-3. Os peptídeos selecionados, N2, N6 e N7, foram capazes de inibir a resposta proliferativa alogeneica (maior inibição: peptídeo N7 60,53%) e induzida pelo anticorpo anti-CD3 (maior inibição: peptídeo N2 31,01%). A partir desses resultados, concluímos que o nosso painel de expressão gênica REGULA/INFLAMA foi adequado para identificar peptídeos da Hsp60 predominantemente reguladores. Dentre os possíveis mecanismos supressores desses peptídeos, apontamos a ação das citocinas reguladoras IL-10, TGF-, a inibição de fatores de transcrição próinflamatórios como T-bet e RORt, e a geração de células T reguladoras. O próximo passo, já em andamento no nosso laboratório, será testar esses peptídeos em modelos de transplante e doenças autoimunes visando, no futuro, o seu uso em aplicações terapêuticas na clínica. / Heat shock proteins (HSPs) have dual immunologic functional activity inducing both proinflammatory and regulatory responses. These properties place HSPs and their peptides as molecules displaying great potential as immunomodulatory agents. In this study, our goal was to identify potential immunoregulatory Hsp60 peptides, analyzing their capacity to modify the expression of immunoregulatory (REG) or proinflammatory (INFLAMMA) genes in PBMC of healthy individuals. The REG/INFLAMMA gene panel analysis showed that most peptides displaying an immunoregulatory profile belong to the Hsp60 N-terminal region. We selected 3 peptides that showed the highest REG/INFLAMMA ratio (N2, N6 and N7) for functional studies. Cytokine analysis showed good correspondence between messenger RNA and protein production induced by the peptides, and N7 peptide induced high IL-10/IFN- ratio. The selected peptides also interacted directly with purified T lymphocytes, indicating an APC-independent activity for Hsp60 peptides. Despite differences between the effect on PBMC and on purified lymphocytes, Hsp60 peptides induced predominantly REG type of gene expression modifications, with the induction of Foxp3 and GATA-3. The selected peptides, N2, N6 and N7, were capable of inhibiting allogeneic proliferation (highest inhibition: N7 peptide 60,53%) and the proliferation induced by anti-CD3 antibody (highest inhibition: N7 peptide 31,01%). We concluded that our REG/INFLAMMA gene expression panel was appropriate to indentify regulatory Hsp60 peptides. Among their possible suppressive mechanisms, we can point out the action of the regulatory cytokines IL-10 and TGF-, the inhibition of proinflammatory transcription factors T-bet and RORt and the generation of regulatory T cells. The next step, ongoing in our lab, is to test these peptides in experimental models of allotransplantation and autoimmune diseases, aiming at future therapeutic applications in the clinic.

No description available.

Chaperonins (Hsp60 chaperones) comprise a class of oligomeric, high-molecular-weight chaperones that have the unique ability to fold some proteins that cannot be folded by simpler chaperone systems. The term &ldquo / thermosome&rdquo / is used for molecular chaperonins from Archaeal organisms since they accumulate to high levels upon heat-shock. In this study first time, we have cloned and sequenced two Hsp60 subunit genes (&amp / #945 / and &amp / #946 / ) from a thermoacidophilic archaeon Thermoplasma volcanium. For cloning we have followed a PCR based strategy. Amplification of Hsp60 &amp / #945 / gene from chromosomal DNA of T. volcanium yielded a product of 1939 bp amplicon and that of Hsp60 &amp / #946 / gene yielded a product of 1921 bp amplicon. After ligation of the PCR fragments to pDrive vector, recombinant plasmids were transferred into E. coli TG-1 competent cells and recombinant colonies were selected by blue/white screening. The cloning of two subunit genes were confirmed by restriction mapping and by sequencing. Both subunit genes were then subcloned to pUC18 vector consequtively to construct a co-expression vector. Both subunit genes were expressed under control of their own promoters leading to production of active Hsp60 chaperonin (thermosome). Chaperone activity of the recombinant thermosome was shown by using pig citrate synthase enzyme as substrate. Thermosome induced refolding was observed when renaturation was carried out at 50&deg / C for 2,5 h. Under this condition, citrate synthase activities associated with control and test were &amp / #61508 / mA412/min:19.0 and &amp / #61508 / mA412/min:24.0 respectively. Clustal W Version 1.82 was used for multiple sequence alignments of Hsp60 &amp / #61537 / and Hsp60 &amp / #61538 / proteins of T. volcanium and other Hsp60 proteins from various eukaryotes, bacteria and archaea. The highest sequence similarity was found between &amp / #945 / subunit proteins of T. volcanium and T. acidophilum (94%) and &amp / #946 / subunit proteins of T. volcanium and T. acidophilum (93%). Clusters of orthologous groups and conserved domain database searches revealed the phylogenetic relationships between Hsp60 &amp / #61537 / and Hsp60 &amp / #61538 / subunits of T. volcanium thermosome and other Hsp60 proteins from various eukaryotes, bacteria and archaea. Induction of both subunit genes under heat shock (65&deg / C, 70&deg / C and 75&deg / C for 2h) and under oxidative stress (imposed by 0,008 mM, 0,01 mM, 0,02 mM, 0,03 mM and 0,05 mM H2O2) conditions was studied by Real-Time PCR technique and amplified cDNA band density analysis.

Immune activation is increasingly recognized as a critical element of HIV infection and pathogenesis, causing expansion of virus founder populations at the mucosal port of entry and eventual exhaustion of cellular immune effectors. A cohort of HIV-resistant (HIV-R) commercial sex workers (CSW) in Nairobi, Kenya, have increased levels of anti- inflammatory factors in vaginal secretions and reduced peripheral immune activation ("immune quiescence"). The mucosal immune micro-environment underlying HIV susceptibility is well-known to be influenced by concurrent sexually transmitted infections, however the role of commensal microbiota is poorly characterized. Bacterial vaginosis (BV), characterized by a shift from Lactobacillus to Gardnerella and Prevotella as dominant members of vaginal microbiota, is a risk factor for HIV acquisition in studies worldwide. However, the etiology and ecological dynamics of BV remain enigmatic, and the mechanisms by which BV increases HIV susceptibility are not fully defined. Protective functional characteristics of Lactobacillus microbiota, including acid and hydrogen peroxide (H2O2) production, may reinforce physicochemical defences of vaginal mucus, stimulate innate epithelial defences and/or modulate activation status of HIV target cells. Therefore, the goal of this study was to determine if reduced BV and increased Lactobacillus colonization are the basis for resistance to HIV in this cohort. Vaginal specimens from a group of 242 CSW were examined, including microscopic diagnosis of BV, culture-based functional analyses and phylogenetic profiling by ultra-deep sequencing. HIV-R individuals were just as likely to have BV compared to other HIV- negative (HIV-N) individuals, and no more likely to be colonized with acid- or H2O2- ii producing bacteria, however two BV-related phylotypes identified by deep sequencing were significantly more likely to be observed in HIV-N individuals (p=0.0002 and p=0.006). HIV+ individuals were significantly more likely than HIV– individuals to have E. coli detected by deep sequencing (p<0.0001) and less likely to have Lactobacillus crispatus (p=0.0006). A coherent set of differences in culture-based and culture- independent characteristics were observed in individuals with BV diagnoses compared to BV– individuals. This study has generated an unprecedented amount of information regarding the composition, structure and function of the vaginal microbiota in African CSW, fundamentally defining many aspects of BV microbiology. Elucidation of the relationship between complex microbial communities and protective mucosal responses against HIV infection should be a priority for future research.

A major obstacle to achieving commercially viable lignocellulosic biofuels through consolidated bioprocessing (CBP) is the lack of “industry-ready” microorganisms. Ideally, a CBP-relevant organism would achieve efficient and complete hydrolysis of lignocellulose, simultaneous utilization of the diverse hydrolysis products and high yields of the desired biofuel. To date, no single microbe has been identified that can perform all of these processes at industrially significant levels. As such, thermophilic decaying woodchip compost was investigated as a source of novel lignocellulolytic, biofuel producing bacteria. From a single sample, a collection of physiologically diverse strains were isolated, which displayed differences in substrate utilization and biofuel production capabilities. Molecular characterization of these isolates, and development of a genome relatedness prediction model based on the chaperonin-60 universal target sequence, identified these isolates as strains of Thermoanaerobacter thermohydrosulfuricus. Application of this model to other Thermoanaerobacter spp. further identified that these isolates belong to a divergent and lesser characterized lineage within the genus. Based on this, the CBP-potential of a single isolate, T. thermohydrosulfuricus WC1, was selected for further investigation through metabolic, genomic and proteomic analyses. Its ability to grow on polymeric xylan, potentially catalyzed by an endoxylanase found in only a few Thermoanaerobacter strains, distinguishes T. thermohydrosulfuricus WC1 from many other strains within the genus. The simultaneous consumption of two important lignocellulose constituent saccharides, cellobiose and xylose was also observed and represents a desirable phenotype in CBP-relevant organisms. However, at elevated sugar concentrations, T. thermohydrosulfuricus WC1 produces principally lactate, rather than the desired biofuel ethanol, as the major end-product. Proteomic analysis identified that all likely end-product forming proteins were expressed at high levels suggesting that the end-product distribution patterns in T. thermohydrosulfuricus WC1 are likely controlled via metabolite-based regulation or are constrained by metabolic bottlenecks. The xylanolytic and simultaneous substrate utilization capabilities of T. thermohydrosulfuricus WC1 identify it as a strain of interest for CBP. However, for its development into an “industry-ready” strain as a co-culture with a cellulolytic microorganism, improved biofuel producing capabilities are needed. The practical implications of CBP-relevant phenotypes in T. thermohydrosulfuricus WC1 in relation to other Thermoanaerobacter spp. will be discussed.

Immune activation is increasingly recognized as a critical element of HIV infection and pathogenesis, causing expansion of virus founder populations at the mucosal port of entry and eventual exhaustion of cellular immune effectors. A cohort of HIV-resistant (HIV-R) commercial sex workers (CSW) in Nairobi, Kenya, have increased levels of anti- inflammatory factors in vaginal secretions and reduced peripheral immune activation ("immune quiescence"). The mucosal immune micro-environment underlying HIV susceptibility is well-known to be influenced by concurrent sexually transmitted infections, however the role of commensal microbiota is poorly characterized. Bacterial vaginosis (BV), characterized by a shift from Lactobacillus to Gardnerella and Prevotella as dominant members of vaginal microbiota, is a risk factor for HIV acquisition in studies worldwide. However, the etiology and ecological dynamics of BV remain enigmatic, and the mechanisms by which BV increases HIV susceptibility are not fully defined. Protective functional characteristics of Lactobacillus microbiota, including acid and hydrogen peroxide (H2O2) production, may reinforce physicochemical defences of vaginal mucus, stimulate innate epithelial defences and/or modulate activation status of HIV target cells. Therefore, the goal of this study was to determine if reduced BV and increased Lactobacillus colonization are the basis for resistance to HIV in this cohort. Vaginal specimens from a group of 242 CSW were examined, including microscopic diagnosis of BV, culture-based functional analyses and phylogenetic profiling by ultra-deep sequencing. HIV-R individuals were just as likely to have BV compared to other HIV- negative (HIV-N) individuals, and no more likely to be colonized with acid- or H2O2- ii producing bacteria, however two BV-related phylotypes identified by deep sequencing were significantly more likely to be observed in HIV-N individuals (p=0.0002 and p=0.006). HIV+ individuals were significantly more likely than HIV– individuals to have E. coli detected by deep sequencing (p<0.0001) and less likely to have Lactobacillus crispatus (p=0.0006). A coherent set of differences in culture-based and culture- independent characteristics were observed in individuals with BV diagnoses compared to BV– individuals. This study has generated an unprecedented amount of information regarding the composition, structure and function of the vaginal microbiota in African CSW, fundamentally defining many aspects of BV microbiology. Elucidation of the relationship between complex microbial communities and protective mucosal responses against HIV infection should be a priority for future research.

As proteínas de choque térmico (Hsp) apresentam importantes funções homeostáticas e podem induzir respostas imunológicas tanto inflamatórias como reguladoras. Por essas propriedades, as Hsp e seus peptídeos têm grande potencial como agentes imunomoduladores. Neste estudo, o nosso objetivo foi identificar peptídeos da Hsp60 com potencial imunorregulador, a partir da análise de sua capacidade de modificar, in vitro a expressão de genes imunorreguladores (REGULA) ou inflamatórios (INFLAMA) em células mononucleares do sangue de indivíduos sadios. A análise desse painel REGULA/INFLAMA nos mostrou que os principais peptídeos potencialmente imunorreguladores estão presentes na região N-terminal da Hsp60. Selecionamos os 3 peptídeos que mostraram as maiores razões REGULA/INFLAMA (N2, N6 e N7) para serem testados nos demais experimentos. A análise das citocinas induzidas pelos peptídeos nos mostrou que existe correspondência entre a presença do RNA mensageiro e a proteína produzida e, o peptídeo N7 induziu uma alta razão IL-10/IFN-. Os peptídeos selecionados interagiram diretamente com linfócitos T purificados, o que mostra que a atividade dos peptídeos da Hsp60 independe de APC. Apesar de diferenças entre o efeito na população celular heterogênea de PBMC e na mais homogênea de linfócitos T, os peptídeos da Hsp60 induziram um predomínio de modificações REGULA com indução sustentada de Foxp3 e GATA-3. Os peptídeos selecionados, N2, N6 e N7, foram capazes de inibir a resposta proliferativa alogeneica (maior inibição: peptídeo N7 60,53%) e induzida pelo anticorpo anti-CD3 (maior inibição: peptídeo N2 31,01%). A partir desses resultados, concluímos que o nosso painel de expressão gênica REGULA/INFLAMA foi adequado para identificar peptídeos da Hsp60 predominantemente reguladores. Dentre os possíveis mecanismos supressores desses peptídeos, apontamos a ação das citocinas reguladoras IL-10, TGF-, a inibição de fatores de transcrição próinflamatórios como T-bet e RORt, e a geração de células T reguladoras. O próximo passo, já em andamento no nosso laboratório, será testar esses peptídeos em modelos de transplante e doenças autoimunes visando, no futuro, o seu uso em aplicações terapêuticas na clínica. / Heat shock proteins (HSPs) have dual immunologic functional activity inducing both proinflammatory and regulatory responses. These properties place HSPs and their peptides as molecules displaying great potential as immunomodulatory agents. In this study, our goal was to identify potential immunoregulatory Hsp60 peptides, analyzing their capacity to modify the expression of immunoregulatory (REG) or proinflammatory (INFLAMMA) genes in PBMC of healthy individuals. The REG/INFLAMMA gene panel analysis showed that most peptides displaying an immunoregulatory profile belong to the Hsp60 N-terminal region. We selected 3 peptides that showed the highest REG/INFLAMMA ratio (N2, N6 and N7) for functional studies. Cytokine analysis showed good correspondence between messenger RNA and protein production induced by the peptides, and N7 peptide induced high IL-10/IFN- ratio. The selected peptides also interacted directly with purified T lymphocytes, indicating an APC-independent activity for Hsp60 peptides. Despite differences between the effect on PBMC and on purified lymphocytes, Hsp60 peptides induced predominantly REG type of gene expression modifications, with the induction of Foxp3 and GATA-3. The selected peptides, N2, N6 and N7, were capable of inhibiting allogeneic proliferation (highest inhibition: N7 peptide 60,53%) and the proliferation induced by anti-CD3 antibody (highest inhibition: N7 peptide 31,01%). We concluded that our REG/INFLAMMA gene expression panel was appropriate to indentify regulatory Hsp60 peptides. Among their possible suppressive mechanisms, we can point out the action of the regulatory cytokines IL-10 and TGF-, the inhibition of proinflammatory transcription factors T-bet and RORt and the generation of regulatory T cells. The next step, ongoing in our lab, is to test these peptides in experimental models of allotransplantation and autoimmune diseases, aiming at future therapeutic applications in the clinic.

Phosducin-like protein (PhLP), a G protein beta gamma subunit dimer binder and G protein signaling regulator, was suggested to regulate the activity of cytosolic chaperonin CCT by their high affinity interaction. In the present study, the three-dimensional structure of PhLP:CCT complex has been solved by cryoelectron microscopy. PhLP was found to bind only one of the chaperonin rings with both N- and C-terminal domains. It spans the central folding cavity of CCT and interacts with two opposite sides of the top apical region, inducing the constraining of the entry of the folding cavity. These findings support a putative role of PhLP as a co-chaperone similar to prefoldin. Docking studies with the atomic model of PhLP generated from several known structures of the homologous phosducin (Pdc) together with the immuno-EM studies have provided more details of the complex structure and predicted some regions of PhLP and the subunits of CCT involved in the interaction. Taking advantage of the fact that Pdc is highly homologous to PhLP but lack of binding to CCT, the regions of PhLP involved in the interaction with CCT were determined by testing various PhLP/Pdc chimeric proteins in the CCT binding assay. In the other part of this dissertation, the physiological role of PhLP in G protein signaling was investigated. Cellular expression of PhLP was blocked using RNA interference targeting PhLP. Together with overexpression of PhLP variants and kinetic studies of G protein beta gamma dimer formation, PhLP was determined to be a positive mediator of G protein signaling and essential for G protein beta gamma dimer expression and dimer formation. Phosphorylation of PhLP at serines 18—20 by protein kinase CK2 was required for G protein beta gamma dimer formation, while a high-affinity interaction of PhLP with CCT appeared unnecessary. Interestingly, G protein beta subunit was found to interact with CCT by co-immunoprecipitation and PhLP over-expression increased the binding of G protein beta subunit to CCT. These results suggest that PhLP and CCT act as co-chaperones in the folding and assembly of the G protein beta gamma subunit dimer by forming a ternary PhLP-Gbeta-CCT complex that is a necessary intermediate in the assembly process.

Phosducin-like protein (PhLP) has been shown to interact with the cytosolic chaperonin containing TCP-1 (CCT), and the βγ subunit dimer of heterotrimeric G proteins (Gβγ). Here we provide details obtained from cryo-electron microscopic and biochemical studies on the structure of the complex between the cytosolic chaperonin CCT and PhLP. Binding of PhLP to CCT occurs through only one of the two chaperonin rings, making multiple contacts with CCT through both its N- and C-terminal domains. In addition, we show that PhLP acts as a co-chaperonin along with CCT in mediating the assembly of the G protein βγ subunit and that assembly is dependant upon the phosphorylation of PhLP by the protein kinase CK2. Variants of PhLP lacking the CK2 phosphorylation sites, or variants with an inability to bind Gβγ block the assembly process and inhibit G protein signaling. PhLP forms a complex with CCT and nascent Gβ prior to the release of Gβγ from the ternary complex and subsequent association with the Gγ subunit to form the Gβγ dimer. In order to understand the mechanism of Gβγ dimer assembly and the role of PhLP phosphorylation in the assembly process, we provide here a method for the purification of the PhLP·CCT·Gβ ternary complex of sufficient purity for structural studies.