Thesis (Ph. D.)--University of Oregon, 2002. / Typescript. Includes vita and abstract. Includes bibliographical references (leaves 174-182).

Hybrid plants and animals, like corn and the domestic dog, grow larger and more vigorously than their parents, a common phenomenon known as hybrid vigor or heterosis. In hybrids between Arabidopsis ecotypes or species (in allotetraploids), altered expression of circadian clock genes leads to increased starch and chlorophyll content and greater biomass. In plants and animals, circadian clock regulation plays a key role in optimizing metabolic pathways, increasing fitness, and controlling responses to biotic and abiotic stresses. In the allotetraploids, the increased level of heterosis is likely caused by interspecific hybridization as well as genome doubling. However, it is unknown how genome dosage and allelic effects influence heterosis, and whether additional clock output traits, such as stress responses, are altered in hybrids. In three related projects, the effects of genomic hybridization (including parent-of-origin effects) and genome dosage on heterosis were elucidated. In my first project, I found that although ploidy influenced many traits, including seed and cell size, biomass and circadian clock gene expression were most strongly influenced by hybridization. Additionally, parent-of-origin effects between reciprocal hybrids were frequently observed for many traits. In my second project, I described a unique role for RNA-directed DNA methylation (mainly CHH methylation) in mediating the parent-of-origin effect on expression of the circadian clock gene CCA1 in reciprocal hybrids. Altered CCA1 expression peaks were associated with heterosis of biomass accumulation in the reciprocal hybrids. Lastly, I used transcriptome sequencing in hybrids at different times of day to examine changes in downstream clock-regulated pathways. In the hybrids, many genes in photosynthetic pathways were upregulated, while many genes involved in biotic and abiotic stresses were repressed during the morning and afternoon, respectively. Additionally, natural variation between parents in stress-responsive gene expression was found to be crucial for producing vigorous hybrids. These conceptual advances increase the mechanistic understanding of heterosis, and may guide selection of parents for making better hybrids. / text

Despite teleosts being the largest and most diverse group of vertebrates, fish models currently used to study photoperiodic effects on fish physiology have been limited to a few species, most of which are temperate seasonal breeders. The overall aim of this work was to expand our knowledge on circadian biology and environmental physiological effects in Nile tilapia (Oreochromis niloticus niloticus), a continuous breeding species of tropical-subtropical origin. The circadian light axis of Nile tilapia is described with regards to melatonin production. Circadian melatonin profiles of fish under 12L:12D photoperiods were observed to be low at day and high at night, suggesting melatonin to be an entraining signal as observed in all other vertebrates. When constant light (LL) was used, such day and night fluctuations where abolished. However when fish where exposed to constant darkness (DD) a strong robust endogenous melatonin rhythm was found, suggesting the presence of circadian oscillators in this species. Importantly, this endogenous rhythm was observed to be maintained for at least three weeks under darkness and proved to be circadian in nature. Moreover, although the melatonin system was able to produce day and night melatonin rhythms when exposed to a different (6L:6D) photocycle, the oscillator appeared to not be entrainable to such a short photo cycle when exposed to DD, as melatonin levels remained high. When comparing the circadian organization of different teleost species including Nile tilapia, preliminary studies showed at least three divergent circadian light organizations in teleosts. Nile tilapia was characterised by a pineal gland far less sensitive than in other fish species as demonstrated through in vitro studies. Furthermore, pineal melatonin production was clearly dependent on the light perceived by the eyes as ophthalmectomy resulted in basal plasma melatonin levels during the dark period. These findings are the first to be reported in a teleost and could be comparable to the circadian light organization of higher vertebrates such as mammals. The onset of puberty of Nile tilapia was studied with regards to the newly discovered Kiss1/GPR54 system. Such a system has recently been discovered in mammals and found to be the primary switch of the brain-pituitary-gonadal (BPG) axis. The results of this study not only suggest a link between the Kiss1/GPR54 system and the onset of III puberty in this tropical batch spawning teleost, that would be a highly conserved feature across vertebrates, but also that the transcriptional mechanisms regulating GPR54 expression could be directly or indirectly influenced by light. Finally, a study was conducted on the effects of different intensities of continuous light (LL) on the growth and sexual development of Nile tilapia up to first maturation. The results showed a significant growth response of fish in all LL treatments compared to control fish. Importantly, this confirmed that LL enhances growth in this species and suggests that it is the light regime more than the intensity which is having an effect. This work thus provides important basic knowledge of the light entrainment pathway and circadian melatonin rhythms in Nile tilapia. Of special importance is the discovery of a strong endogenous melatonin oscillator and a novel circadian organization in fish which would seem to be homologous to that observed in higher vertebrates. Moreover, this work provides evidence that the newly discovered Kiss1/GPR54 system has a similar role in fish as has been found in mammals and that such a system could be directly or indirectly regulated by light. If so, Nile tilapia and other fish species could become important models in the chronobiology and reproduction fields. Finally, this work not only increases our basic and applied knowledge of this species, but also broadens our understanding of the circadian light axis in teleosts and its mediatory effects on reproduction.

Rainfall is the most important factor limiting primary production, and hence food availability, in ecosystems. This study tests the thesis that, under conditions where rainfall is unpredictable and food supply varies spatially and temporally from year-to-year, physiological energy-saving mechanisms should evolve in animals for which migration is not an option to avoid periods of low habitat productivity. Apart from the normally erratic rainfall patterns characteristic of arid regions, unpredictable seasonal rainfall may also occur in mesic zones as a consequence of climatic phenomena such as the El Niño Southern Oscillations (ENSO). Using two hypothetical models, this study attempts to determine whether the respective evolutionary history of both aridity and ENSO can be detected in the various phenotypic physiological traits of Rhabdomys pumilio from across southern Africa. Model 1 predicts that a gradient of conservatism of physiological traits related to metabolism, will be detectable along an aridity gradient. Model 2 predicts an increase in the conservatism of similar traits correlated with both the aridity gradient and the gradient of negative rainfall anomalies that are associated with the ENSO. Measurements of circadian rhythms of body temperature and oxygen consumption of individuals of R. pumilio collected from six sites across southern Africa showed that the geographic variation in the physiological traits and proximate responses of this species was explained better by Model 2 than by Model 1. Furthermore, for some traits and proximate responses of this species it was shown that, although the stresses associated with unpredictable rainfall occur less frequently in non-desert ENSO-zones, they are nevertheless sufficient to mimic the selection pressures of rainfall unpredictability in arid zones. This study also highlighted the low basal rates of metabolism and the other conservative physiological traits of this species as a whole. The basal metabolic rate of 0.819 mlO₂g/h and the minimum wet thermal conductance of 0.110 mlO₂/g/h/ºC are lower than that predicted by allometry. The circadian amplitude of body temperature of 2.52°C and the circadian amplitude of oxygen consumption of 1.39 mlO₂/g/h were higher than those predicted by allometric equations. These deviations from predicted values were attributed to the adaptedness of this species to the physiological energy stresses associated with unpredictable resource availability in southern Africa. / Thesis (M.Sc.)-University of Natal, Pietermaritzburg, 1998.

Systems that require a driving force of some kind are very common in physical and biological settings. Driving forces in a biological context are usually referred to as rhythms, pulses or clocks. Here we are interested in the effect of adding a square wave periodic driving force to a biological model. This is intended to model inputs from biological circuits with all-or-none or switch-like resposes. We study a model of cell division proposed by Novak and Tyson. Our switched input is intended to model the interaction of the mitotic oscillator with an ultradian clock. We thoroughly characterize the behaviour as a function of the durations of the active and inactive phases. We also study a model of vein formation in plant leaves proposed by Mitchison. Pulsed hormonal release greatly accelerates vein formation in this model. / x, 105 leaves : ill. (some col.) ; 29 cm.

This thesis assessed the impacts of acute and chronic phase-shifting on learning and memory in male and female rats. Previous research has revealed impaired retention immediately following circadian disruption and on the acquisition of new associations. However, whether behaviour resumes normality following circadian re-entrainment is unresolved. Following circadian re-entrainment, retention of pre-phase-shift acquired associations on Morris water task (MWT) and a visual discrimination task designed on the 8-arm radial maze were tested. Subsequently, an extradimensional set shift (EDS) using the 8-arm radial maze was performed. Acute circadian disruption negatively impacted retention in males and females, but only male rats without running wheels exhibited impairment following chronic phase-shifting on MWT performance. Retention on the visual discrimination task was impaired following chronic, but not acute, circadian disruption. Chronic, but not acute, phase-shifting negatively impacted performance on the EDS. Generally, phase-shifting produced differential negative impacts on cognitive function in rats. / xiv, 181 leaves : ill. (some col.) ; 29 cm

The mammalian genome encodes five collapsin response mediator protein (CRMP) isoforms. Cell culture studies have shown that the CRMPs mediate growth cone dynamics and neuron polarity through associations with a variety of signal transduction components and cytoskeletal elements. CRMP is also a member of a protein family including the presumably ancestral dihydropyrimidinase (DHP) protein that catalyzes the second step in pyrimidine degradation. In Drosophila, CRMP and DHP proteins are produced by alternatively spliced transcripts of the CRMP gene. The alternative protein forms have a 91% sequence identity, but unique expression patterns. CRMP is found exclusively in neuronal tissues and DHP is ubiquitously expressed in non-neuronal tissues. Comparative analysis of CRMP homologous sequences from insect taxa show CRMP alternative splicing is a common feature and probably represents the ancestral state of this gene family. To investigate the regulatory role of CRMP, loss-of-function mutations of CRMP that lack both proteins were isolated; homozygous animals display DHP-null phenotypes but exhibit no overt developmental or neurological defects. To determine possible interactions of Drosophila CRMP with signaling pathways in which mammalian CRMP has been shown to act, the UAS-GAL4 system was utilized. Phenotypes produced by misexpression of a variety of UAS signal transduction mediator responders were modified in a CRMP mutant background. The modification entails enhancement or suppression of a specific phenotype in a direction that corresponds to the hypothesized involvement of mammalian CRMP in signaling pathways that regulate growth cone dynamics. These data suggest that Drosophila CRMP has a role in cell signaling pathways similar to the role of the mammalian CRMPs. Furthermore, recent findings demonstrate that CRMP plays an important role in learning and memory of mice, leading to the assessment of new phenotypes in the Drosophila CRMP mutants. Tests utilizing the Pavlovian olfactory conditioning assay reveal that loss of CRMP function leads to significant learning, 3 hour memory, and long term memory deficits. Preliminary data also suggest that Drosophila CRMP may be required for normal circadian locomotor rhythms. Collectively, the data presented here demonstrate CRMP’s role in adult behavioral processes and regulating signaling events comparable to mammalian CRMP signaling.

Thesis (M. Sc.)--Carleton University, 2008. / Includes bibliographical references (p. 96-98). Also available in electronic format on the Internet.

Thesis (Ph. D.)--Duke University, 2007. / Includes bibliographical references.

Thesis (M.S.)--Florida State University, 2005. / Advisor: James Joiner, Florida State University, College of Arts and Sciences, Dept. of Psychology. Title and description from dissertation home page (viewed Feb.1, 2006). Document formatted into pages; contains vi, 23 pages. Includes bibliographical references.