Os micro-organismos são profícuas fontes de produtos naturais bioativos. Diversos fármacos de importância clínica são de origem microbiana, sendo que a maioria dos antibióticos usados clinicamente é produzida por actinobactérias, principalmente do gênero Streptomyces. A resistência a múltiplas drogas por microorganismos patogênicos e também pelas células tumorais leva à necessidade por novos fármacos antibacterianos e antitumorais. Actinobactérias endofíticas têm demonstrado grande potencial para a busca de produtos naturais bioativos. O presente trabalho relata o estudo químico de duas linhagens de actinobactérias endofíticas, Streptomyces sp. RTd 22 e Streptomyces sp RTd 31, isoladas das raízes de Tithonia diversifolia. As frações ativas nos ensaios biológicos foram fracionadas para a identificação dos compostos bioativos, sendo eles os antibióticos macrolídeos concanamicinas A (S31-1) e B (S31-2), anidro-agliconas das concanamicinas A (S31-3) e B (S31-4), todos produzidos por Streptomyces sp RTd31, e o ionóforo poliéter grisorixina (S22-2), produzido por Streptomyces sp. RTd22. Foi realizado o monitoramento da produção desses compostos bioativos por UPLC-MS através do modo SIM. As concanamicinas A e B tiveram um máximo de produção com 96h, já a grisorixina obteve um máximo com 192h. Outros compostos identificados por desreplicação dos extratos butanólicos de ambas as actinobactérias foram os sideróforos norcardamina (S31-7) e desoxi-nocardamina (S31-8), já o sideróforo desferrioxamina B (S31-9) foi identificado apenas nos extratos butanólicos de Streptomyces sp RTd31. Experimentos de variação do meio de cultivo e co-cultura com bactérias patogênicas foram empregados a fim de estimular a biossíntese de novos compostos, porém nenhum novo metabólito foi identificado. O sequenciamento genético da actinobactéria Streptomyces sp. RTd22 permitiu verificar a presença de vários clusters biossintéticos nesse micro-organismo através da análise feita pelo antiSMASH. Foi possível identificar o cluster da himastatina (S22-4) e da coeliquelina (S22-5), sendo que ambos os compostos não foram biossintetizados nas condições de cultivo utilizadas. O cluster biossintético da grisorixina foi determinado e o experimento de recombinação homóloga para a deleção do gene análogo a flavina mono-oxigenase da nigericina nigC foi realizado. Dois mutantes foram obtidos e um deles foi cultivado para a análise do perfil metabólico por espectrometria de massas. Não houve a produção da grisorixina nem do seu possível precursor pelo mutante, mas outros metabólitos foram produzidos / Microorganisms are prolific sources of bioactive natural products. Several clinically important drugs have microbial origin, and most of the therapeutically used antibiotics are produced by actinobacteria, mainly from the genus Streptomyces. The multidrug resistance observed in pathogenic microorganisms and tumor cells lead to the need for new antibacterial and antitumor drugs . Endophytic actinobacteria have shown great potential in the search for bioactive natural products. This work describes the chemical study of two endophytic actinobacteria strains: Streptomyces sp. RTd 22 and Streptomyces sp RTD 31, isolated from Tithonia diversifolia roots. Active fractions in biological assays were further fractionated for identifying the bioactive compounds, which are: the macrolide antibiotics concanamycins (S31-1) and B (S31-2), anhydrous aglycones of concanamycins A (S31-3) and B (S31-4), all four produced by Streptomyces sp. RTd31, and the ionophore polyether grisorixin (S22-2), produced by Streptomyces sp. RTd22. The production of these bioactive compounds was monitored by UPLC-MS via the SIM mode. Concanamycins A and B had maximum production at 96 h, and grisorixin at 192 h. Other compounds identified by the dereplication of buthanolic extracts of both actinobacteria were the siderophore norcardamine (S31-7) and deoxy-nocardamine (S31-8), the siderophores desferrioxamine B (S31-9) was identified only in buthanolic extracts of Streptomyces sp RTd31. Experiments varying media and co-culture were tested to stimulate the biosynthesis of novel compounds, but nothing new was identified. By genome sequencing of Streptomyces sp RTd22 and antiSMASH analysis it was possible to verify the presence of several biosynthetic clusters in the genome of this strain. It was possible to identify the biosynthetic clusters of himastatin (S22-4) and its analogous compound coelichelin (S22-5); however, these compounds were not biosynthesized in the culture conditions used. The grisorixin biosynthetic cluster was determined, and homologous recombination was performed for deleting the analogue gene of nigericin flavin monooxygenase nigCI. Two mutants were obtained, and one of them was cultured for analyzing its metabolic profile by mass spectrometry. There was no production of grisorixin or its possible precursor by the mutant, but others compounds were produced.

Dysregulated wound healing is commonly associated with excessive fibrosis. Connective tissue growth factor (CTGF/CCN2) is characteristically overexpressed in fibrotic diseases and stimulated by transforming growth factor-β (TGF-β) in dermal fibroblasts. Reepithelialisation and epidermal wound coverage counteract excessive scar formation. We have previously shown that interleukin-1α (IL-1α) derived from keratinocytes conteracts TGF-β-stimulated CTGF-expression. The aim of this thesis was to further explore the effects of keratinocytes and IL-1α on gene and protein expression, as well as pathways, in TGF-β stimulated fibroblasts. Fibroblasts were studied in vitro by conventional two dimensional cell culture models and in a three dimensional keratinocyte-fibroblast organotypic skin culture model. The results showed that IL-1 suppresses basal and TGF-β-induced CTGF mRNA and protein, involving a possible TAK1 mechanism. Keratinocytes regulate the expression of fibroblast genes important for the turnover of the extracellular matrix. Most of the genes analysed (11/13) were regulated by TGF-β and counter regulated by keratinocytes. The overall results support a view that keratinocytes regulate fibroblasts to act catabolically (anti-fibrotic) on the extracellular matrix. Transcriptional microarray and gene set enrichment analysis showed that antagonizing effects of IL-1α on TGF-β were much more prominent than the synergistic effects. The most confident of these pathways was the interferon signaling, which were inhibited by TGF-β and activated by IL-1α. A proteomics study confirmed that IL-1α preferentially conteracts TGF-β effects. Six new fibroblast proteins involved in synthesis/ regulation were identified, being regulated by TGF-β and antagonized by IL-1α. Pathway analysis confirmed counter-regulation of interferon signaling by the two cytokines. These findings have implications for understanding the role of fibroblasts for inflammatory responses and development of fibrosis in the skin.

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Introduction : La fécondation in vitro est de mieux en mieux connue et en amélioration constante, cependant les taux d’implantation et de grossesse sont encore bas (environ 35% par fécondation in vitro). Un des enjeux de l’amélioration de la fécondation in vitro est le développement embryonnaire et l’implantation. Pour cela, la co-culture des embryons sur un tapis de cellules endométriales maternelles autologues peut être utilisée pour améliorer le développement embryonnaire (taux d’embryon se développant jusqu’à J5 : blastocyste) et l’implantation. L’objectif de l’étude est d’étudier le lien entre la qualité du tapis cellulaire et le développement embryonnaire. Matériel et méthodes : Cette étude est une sous analyse de l’essai clinique randomisé en double aveugle OvoGen, comparant le taux de blastulation et de grossesse dans deux groupes randomisés : le groupe étude, dans lequel les embryons se développent sur un tapis cellulaire endométrial maternel et le groupe contrôle, dans lequel les embryons sont cultivés dans du milieu conventionnel. Nous avons analysé la qualité des tapis cellulaire du groupe étude (confluence des cellules, taux de cellules épithéliales et vitalité des cellules stromales) par rapport au développement embryonnaire et au taux de grossesse. Résultats : 50 tapis de cellules endométriales maternelles et 291 embryons sur les puits ont été analysés de 2012 à 2015 à la clinique ovo (Montréal, Québec). La qualité des embryons n’était pas changée par la qualité des tapis (p=0,65 pour la confluence, p=0,25 pour le taux de glande et p=0,92 pour la viabilité des cellules). En revanche, le taux de grossesse augmentait quand la confluence diminuait (p=0,022) et lorsque la viabilité des cellules stromales augmentait (p=0,001). De plus, la qualité des tapis était dépendante de la date de la biopsie : la biopsie faite à J7 après l’ovulation permettait une meilleure qualité de puits (confluence augmentée, p=0,045, taux de glande augmenté p=0,004 et viabilité stromales augmentée p=0,001) que la biopsie faite à J5 post ovulation. Discussion : Aucune des nombreuses études sur la co-culture ne porte sur la qualité des tapis cellulaire. Il est intéressant de noter que le taux de grossesse augmente avec la diminution de la confluence et l’augmentation de la viabilité des cellules stromales dans les puits contenant les embryons transférés. Comme il a déjà été démontré, (1)le jour de la biopsie endométriale influe sur la qualité du tapis cellulaire en coculture et pour que celui-ci soit de bonne qualité, il faut que l’endomètre soit réceptif (après J19 du cycle). Conclusion : Nous avons montré que la qualité des tapis cellulaires dépendait du jour de la biopsie d’endomètre et que cette qualité pouvait influencer le bénéfice de la co-culture. Il serait intéressant d’étudier la réceptivité de l’endomètre au moment de la biopsie avant utilisation des cellules en co-culture pour optimiser la qualité du tapis cellulaire. / Introduction: Lot's of progress has been made in the process of in vitro fertilization (IVF) in the last years. However, the pregnancy rate is still low. There are two important issues in IVF: embryo development and implantation. One answer may be the endometrial autologue co-culture which could improve the embryo development and the implantation rate in many ways. The aim of this study is to assess the effect of co-culture quality on human embryo development and implantation rate. Materials and methods: The ovogen study was a randomized, double blind trial analysis. OvoGen compared the blastulation and the pregnancy rate in two randomized groups: the study group, with autologous endometrial co-culture and the control group, with conventional media. The outcome of our study was to assess the correlation between the quality of autologous endometrial co-culture (cells confluence, rate of epithelials cells and stromals cells viability) and the embryo development. Results: FIfty patients in the co-culture group were analyzed between 2012 to 2015 at the ovo clinic (Montreal, Quebec). 291 embryos were analyzed, each cocultured on a monolayer endometrial cells. The embryo quality was not significantly linked with the co-culture quality (p=0,65 for the cells confluence, 0,25 for the epithelial cells rate and 0,92 for the stromal cells viability). On the other hand, the 11 pregnancy rate increased in correlation with the decreasing of the confluence (p=0,022) and the increase of stromal cells (p=0,001). Moreover, the moment of the biopsy had an effect on the co-culture: when the biopsy was performed seven days after the ovulation, the quality of the co-culture was better (confluence increased p=0,045, epithelials cells increased p= 0,004 and stromal cells viability increased p=0,001) than when the biopsy was done five days after the ovulation. Discussion: There were no previous study on the quality of the co-culture and its effect on the embryo development. The fact that the pregnancy rate increased with the decrease of the confluence in the co-culture is interesting. Indeed, we could easily explain why a huge confluence could be prejudicial for the dialog between embryo and endometrium. Moreover, in accordance with previous experience, the day of the biopsy in the cycle is important for the quality of the endometrium. This is why the day of the biopsy may have an effect on the co-culture quality. Conclusion: Our results show that the moment of the biopsy has an effect on the quality of the co-culture and that the quality of the co-culture has an effect on the pregnancy rate. It could be interesting to study the endometrium receptivity on the biopsy before the co-culture to optimize the quality and the benefit of the co-culture.

Campylobacter jejuni is the leading bacterial cause of gastrointestinal diarrheal disease in humans worldwide. This zoonotic pathogen has a complex epidemiology due to its presence in many different host organisms. The overall aim of this thesis was to explore the role of amoebae of the genus Acanthamoeba as an intermediate host and vector for survival and dissemination of C. jejuni. Earlier studies have shown that C. jejuni can enter, survive and replicate within Acanthamoebae spp. In this thesis, I have shown that C. jejuni actively invades Acanthamoeba polyphaga. Once inside, C. jejuni could survive within the amoebae by avoiding localization to degradative lysosomes. We also found that A. polyphaga could protect C. jejuni in acid environments with pH levels far below the range in which the bacterium normally survives. Furthermore, low pH triggered C. jejuni motility and invasion of A. polyphaga. In an applied study I found that A. polyphaga also could increase the survival of C. jejuni in milk and juice both at room temperature and at +4ºC, but not during heating to recommended pasteurization temperatures. In the last study we found that forty environmental C. jejuni isolates with low bacterial concentrations could be successfully enriched using the Acanthamoeba-Campylobacter coculture (ACC) method. Molecular genetic analysis using multilocus sequence typing (MLST) and sequencing of the flaA gene, showed no genetic changes during coculture. The results of this thesis have increased our knowledge on the mechanisms behind C. jejuni invasion and intracellular survival in amoebae of the genus Acanthamoeba. By protecting C. jejuni from acid environments, Acanthamoebae could serve as important reservoirs for C. jejuni e.g. during acid sanitation of chicken stables and possibly as vectors during passage through the stomach of host animals. Furthermore, Acanthamoeba spp. could serve as a vehicle and reservoir introducing and protecting C. jejuni in beverages such as milk and juice. Validation of the ACC method suggests that it is robust and could be used even in outbreak investigations where genetic fingerprints are compared between isolates. In conclusion, Acanthamoeba spp. are good candidates for being natural hosts and vectors of C. jejuni.

Le développement de méthodes in vitro fiables et prédictives représente à l’heure actuelle un véritable défi. En effet, la demande en méthodes alternatives à l’expérimentation animale n’a cessé de croître ces dernières années du fait de la mise en place de législations limitant par considérations éthiques l’utilisation de ces modèles in vivo. De plus, ce besoin a été renforcé par le règlement européen REACH (Registration, Evaluation, Authorization and Restriction of Chemicals) imposant aux industriels de valider l’innocuité de nombreuses substances déjà commercialisées. Toutefois, les modèles in vitro classiques consistant en la culture simple de cellules en monocouche dans des boîtes de Petri ne permettent pas de conserver les propriétés initiales de ces cellules et de retranscrire les conditions et l’environnement cellulaire des organes in vivo. Le développement de méthodes alternatives in vitro prédictives s’avèrent donc crucial en particulier pour mimer le fonctionnement de deux organes : l’intestin et le foie. En effet, ces deux organes sont largement impliqués dans les processus d’Absorption, Distribution, Métabolisme et Excrétion (ADME) de la plupart des xénobiotiques ingérés. C’est pour ces raisons que nous avons testé la faisabilité de l’une de ces méthodes in vitro alternative permettant d’associer une barrière intestinale à la culture dynamique de cellules hépatiques au sein de microsystèmes dans le cadre de ce doctorat. Cette coculture est effectuée au sein du dispositif appelé IIDMP (Integrated Insert in a Dynamic Microfluidic Platform). Nous avons décidé de tester d’une part l’influence de la culture dynamique et d’autre part d’éventuelles interactions entre les cellules intestinales et hépatiques sur la fonctionnalité et l’activité métabolique de ces deux types cellulaires. Les résultats obtenus durant ce doctorat ont permis d’atteindre 4 objectifs :- Développer un dispositif fiable en termes de fonctionnalité (fluidique, robustesse…).- Mettre en évidence l’innocuité du dispositif lorsque des cellules de lignée et primaires y étaient cultivées.- Démontrer les avantages de l’utilisation de ce dispositif comparativement à l’utilisation de modèles classiques in vitro, en particulier avec des cellules de lignée.- Démontrer que l’utilisation de ce dispositif permettait de mettre en évidence des phénomènes d’interactions entre cellules intestinales et hépatiques notamment sur l’activité du CYP1A2 des hépatocytes qu’ils soient issus d’une lignée ou de cultures primaires. / The development of reliable and predictive in vitro methods is a real challenge. Indeed, the demand for alternative methods to animal experimentation has been growing in recent years due to the introduction of legislation limiting the use of these models in vivo by ethical considerations. Moreover, this need was amplified by regulations such as the European REACH (Registration, Evaluation, Authorization and Restriction of Chemicals) requiring the safety validation of many substances. However, the conventional in vitro model consisting in a simple cell culture monolayer in Petri dishes does not preserve the initial properties of these cells and does not mimic the conditions of the cellular environment and organs in vivo. The development of alternative in vitro predictive methods is crucial especially to mimic the working of two organs: the intestine and liver. Indeed, these two organs are involved in the process of Absorption, Distribution, Metabolism and Excretion (ADME) of most xenobiotics ingested.We propose in this thesis to test the feasibility of one of these in vitro alternative methods allowing the association between an intestinal barrier and the dynamic culture of hepatic cells in microsystems in a device called IIDMP (Integrated Dynamic Insert in a Microfluidic Platform). We tested the influence of the flow of culture and possible interactions between intestinal and liver cells on the function and metabolic activity of these two cell types.Then, we demonstrated that : - This device is reliable in terms of global functionality (fluid, robustness ...).- This device did not injury the integrity of the cell line and primary cells.- The use of this device has many advantages when compared with the use of conventional in vitro models, especially with cells line.- The use of this device highlights phenomena of interaction between hepatic and intestinal cells as an increase of the CYP1A2 activity of HepG2 C3A and human primary hepatocytes.

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Natural Killer (NK) cellterapi är en lovande kandidat för cancerbehandling på grund av dess förmåga att känna igen och döda cancerceller. Adoptiv överföring av expanderade autologa eller allogena NK-celler har visat sig förbättra patientresultaten, särskilt i fall av akut myeloid leukemi (AML) efter stamcellstransplantation. En stor utmaning förknippad med NK-cellterapi är dock att få en tillräcklig mängd NK-celler för att uppnå meningsfulla terapeutiska resultat. Nuvarande metoder för att expandera NK-celler innebär ofta att T-celler avlägsnas från blodet, eftersom T-celler utgör över 50 % av blodets cellpopulation, medan NK-celler endast utgör cirka 10 %. Strategin för att ta bort T-celler involverar vanligtvis användningen av immunomagnetiska metoder, som kräver utbildad personal, är dyra och kräver god tillverkningssed (GMP) för att säkerställa metodens giltighet. Detta projekt syftade till att ta itu med denna fråga genom att etablera ett samodlingssystem mellan NK- och T-celler för att fungera som en modell för NK-expansion från patientens blod, vilket skulle kunna förbättra effektiviteten av cancerbehandling. Projektet syftade också till att undersöka det metaboliska beteendet (skillnader i näringsbehov och biprodukttolerans) mellan de två celltyperna. De två första experimenten med Jurkat gjordes med användning av en modifierad DMEM/RPMI och RPMI 1640-mediet under varierande glukos- och glutaminmålförhållanden. Resultatet från dessa två experiment visar att det modifierade DMEM/RPMI-mediet stödjer tillväxten av Jurkat-celler. Dessutom var produktionen av biprodukter inklusive laktat och ammoniak lägre i detta medium. Emellertid var glukos och glutamin avgörande för Jurkat-celltillväxt eftersom uppenbar konsumtion observerades under odlingsperioden. Det tredje experimentet syftade till att bedöma den negativa/reducerande effekten av glukos- och glutamintillstånd på Jurkat-celler. Resultaten från detta experiment applicerades sedan på NK-92-cellexpansion (fjärde experimentet). Det femte experimentet involverade samodling av båda celltyperna, med början med ett förhållande på 10% NK-celler till 90% Jurkat-celler, en ny celldiameterbaserad distributionsmetod användes för att förutsäga procentandelen NK-92-celler under samodlingen. Från dag 3 till dag 4 var det en ökning av andelen NK-celler, särskilt inom cellstorleksintervallet där de vanligtvis förekommer (17,4 µm). NK-cellerna utökades från 10 % på dag 0 till 52 % (i tillstånd med 2 mM glukos, 2 mM glutamin) på dag 3 och 45 % i tillstånd med 2 mM (glukos), 0,15 mM glutamin på dag 2. Sammantaget uppnådde denna studie framgångsrikt projektets mål att utveckla en samodlingsmodell genom att studera de enskilda cellinjernas metaboliska beteende. Ytterligare studier behövs för att undersöka effekterna av Interleukin 2 (IL-2) som produceras av Jurkat-celler på NK-celler. Dessutom skulle experiment med fler glukos- och glutaminmålkoncentrationer under längre odlingsperioder erbjuda en mer omfattande förståelse av samodlingssystemet, inklusive dess långsiktiga livskraft och celltillväxten av dessa cellinjer. / Natural Killer (NK) cell therapy is a promising candidate for cancer treatment due to its ability to recognize and kill cancer cells. The adoptive transfer of expanded autologous or allogenic NK cells has shown to improve patient outcomes, especially in cases of Acute Myeloid Leukemia (AML) following stem cell transplantation. However, a major challenge associated with NK cell therapy is obtaining a sufficient amount of NK cells to achieve meaningful therapeutic outcomes. Current methods for expanding NK cells often involve the removal of T cells from the blood, as T cells constitute over 50% of the blood's cell population, while NK cells make up only about 10%. The strategy to remove T cells typically involves the use of immunomagnetic beads, which require trained personnel, are expensive, and necessitate good manufacturing practices (GMP) to ensure the method's validity. This project aimed to address this issue by establishing a coculture system between NK and T cells to serve as a model for NK expansion from the patient blood which could improve the effectiveness of cancer treatment. The project also aimed at investigating the metabolic behavior (differences in nutrient demands and byproduct tolerance) between the two cell types. The first two experiment with Jurkat was done using a modified DMEM/RPMI and the RPMI 1640 media under varying glucose and glutamine target conditions. The result from these two experiments shows that the modified DMEM/RPMI media support the growth of Jurkat cells. In addition, the production of byproducts including lactate and ammonia were lower in this media. However, glucose and glutamine were crucial for Jurkat cells growth as evident consumption was observed during the culture period. The third experiment aimed to assess the negative/reducing impact of glucose and glutamine conditions on Jurkat cells. The findings from this experiment were then applied to NK-92 cells expansion (fourth experiment). The fifth experiment involved coculturing both cell types, starting with a ratio of 10% NK cells to 90% Jurkat cells, a new cell diameter based distribution method was used to predict the percentage of NK-92 cells during the coculture. From day 3 to day 4, there was an increase in the percentage of NK cells, particularly within the cell size range where they typically occur (17,4 µm). The NK cells were expanded from 10% on day 0 to 52% (in condition with 2mM glucose, 2mM glutamine) on day 3 and 45% in condition with 2mM(glucose), 0,15mM glutamine on day 2. Overall, this study successfully achieved the project's aim of developing a coculture model through studying the metabolic behavior of the individual cell lines. However, further studies are needed to investigate the effects of Interleukin 2 (IL-2) produced by Jurkat cells on NK cells. Moreover, conducting experiments with more glucose and glutamine targets concentrations over extended culture periods would offer a more comprehensive understanding of the coculture system, including its long-term viability and the cell growth of these cell lines.

Stimulating lymphocytes with Ifn-γ, anti-CD3, and interleukin-2 promotes the proliferation of a cell population coexpressing T-lymphocyte surface antigens such as CD3, CD8a, and CD25 as well as natural killer cell markers such as NK1.1, CD49, and CD69. These cells, referred to as cytokine-induced killer cells (CIKs), display cytotoxic activity against tumour cells, even without prior antigen presentation, and offer a new cell-based approach to the treatment of malignant diseases. Because CIKs are limited in vivo, strategies to optimize in vitro culture yield are required. In the last 10 years, mesenchymal stem cells (MSCs) have gathered considerable attention. Aside from their uses in tissue engineering and as support in haematopoietic stem cell transplantations, MSCs show notable immunomodulatory characteristics, providing further possibilities for therapeutic applications. In this study, we investigated the influence of murine MSCs on proliferation, phenotype, vitality, and cytotoxicity of murine CIKs in a coculture system. We found that CIKs in coculture proliferated within 7 days, with an average growth factor of 18.84, whereas controls grew with an average factor of 3.7 in the same period. Furthermore, higher vitality was noted in cocultured CIKs than in controls. Cell phenotype was unaffected by coculture with MSCs and, notably, coculture did not impact cytotoxicity against the tumour cells analysed. The findings suggest that cell–cell contact is primarily responsible for these effects. Humoral interactions play only a minor role. Furthermore, no phenotypical MSCs were detected after coculture for 4 h, suggesting the occurrence of immune reactions between CIKs and MSCs. Further investigations with DiD-labelled MSCs revealed that the observed disappearance of MSCs appears not to be due to differentiation processes.