Thesis (Ph.D.)--McMaster University, 2003. / Advisor: H. deBruin. Includes bibliographical references (leaves 157-169). Also available via World Wide Web.

Magnetic Resonance Imaging at field strengths up to 3 T, has become a default diagnostic modality for a variety of disorders and injuries, due to multiple reasons ranging from its non-invasive nature to the possibility of obtaining high resolution images of internal organs and soft tissues. Despite tremendous advances, MR imaging of certain anatomical regions and applications present specific challenges to be overcome. One such application is MR Musculo-Skeletal Imaging. This work addresses a few difficult areas within MSK imaging from the hardware perspective, with coil solutions for dynamic imaging of knee and high field imaging of hand. Starting with a brief introduction to MR physics, different types of RF coils are introduced in chapter 1, followed by sections on design of birdcage coils, phased arrays and their characterization in chapter 2. Measurements, calculations and simulations, done during the course of this work, have been added to this chapter to give a quantitative feel of the concepts explained. Chapter 3 deals with the construction of a phased array receiver for dynamic imaging of knee of a large animal model, i.e. minipig, at 1.5 T. Starting with details on the various aspects of an application that need to be considered when an MR RF array is designed, the chapter details the complex geometry of the region of interest in a minipig and reasons that necessitate a high density array. The sizes of the individual elements that constitute the array have been arrived at by studying the ratio of unloaded to loaded Q factors and choosing a size that provides the best ratio but still maintains a uniform SNR throughout the movement of the knee. To have a minimum weight and to allow mechanical movement of the knee, the Preamplifiers were located in a separate box. A movement device was constructed to achieve adjustable periodic movement of the knee of the anesthetized animal. The constructed array has been characterized for its SNR and compared with an existing product coil to show the improvement. The movement device was also characterized for its reproducibility. High resolution static images with anatomical details marked have been presented. The 1/g maps show the accelerations possible with the array. Snapshots of obtained dynamic images trace the cruciate ligaments through a cycle of movement of the animal's knee. The hardware combination of a high density phased array and a movement device designed for a minipig's knee was used as a 'reference' and extended in chapter 4 for a human knee. In principle the challenges are similar for dynamic imaging of a human knee with regards to optimization of the elements, the associated electronics and the construction of the movement device. The size of the elements were optimized considering the field penetration / sensitivity required for the internal tissues. They were distributed around the curvature of the knee keeping in mind the acceleration required for dynamic imaging and the direction of the movement. The constructed movement device allows a periodic motion of the lower half of the leg, with the knee placed within the coil, enabling visualization of the tissues inside, while the leg is in motion. Imaging has been performed using dynamic interleaved acquisition sequence where higher effective TR and flip angles are achieved due to a combination of interleaving and segmentation of the sequence. The movement device has been characterized for its reproducibility while the SNR distribution of the constructed RF array has been compared with that of a commercially available standard 8 channel array. The results show the improvement in SNR and acceleration with the constructed geometry. High resolution static images, dynamic snapshots and the 3D segmentation of the obtained images prove the usefulness of the complete package provided in the design, for performing dynamic imaging at a clinically relevant field strength. A simple study is performed in chapter 5 to understand the effects of changes in overlap for coil configurations with different loads and at different frequencies. The noise levels of individual channels and the correlation between them are plotted against subtle changes in overlap, at 64 and 123 MHz. SNR for every overlap setup is also measured and plotted. Results show that achieving critical overlap is crucial to obtain the best possible SNR in those coil setups where the load offered by the sample is low. Chapter 6 of the thesis work deals with coil design for high field imaging of hand and wrists at 7 T, with an aim to achieve ultra high resolution imaging. At this field strength due to the increase in dielectric effects and the resulting decrease in homogeneity, whole body transmit coils are impractical and this has led engineers to design local transmit coils, for specific anatomies. While transmit or transceive arrays are usually preferred, to mitigate SAR effects, the spatial resolution obtained is limited. It is shown that a solution to this, with regards to hand imaging, can be a single volume transmit coil, along with high density receive arrays optimized for different regions of the hand. The use of a phased array for reception provides an increased SNR / penetration under high resolution. A volume transmit coil could pose issues in homogeneity at 7 T, but the specific anatomy of hand and wrist, with comparatively less water content, limits dielectric effects to have homogeneous B_1+ profile over the hand. To this effect, a bandpass birdcage and a 12 channel receive array are designed and characterized. Images of very high spatial resolution (0.16 x 0.16 x 0.16 mm3) with internal tissues marked are presented. In vivo 1/g maps show that an acceleration of up to 3 is possible and the EM simulation results presented show the uniform field along with SAR hotspots in the hand. To reduce the stress created due to the 'superman' position of imaging, provisions in the form of a holder and a hand rest have been designed and presented. Factors that contributed to the stability of the presented design are also listed, which would help future designs of receive arrays at high field strengths. In conclusion, the coils and related hardware presented in this thesis address the following two aspects of MSK imaging: Dynamic imaging of knee and High resolution imaging of hand / wrist. The presented hardware addresses specific challenges and provides solutions. It is hoped that these designs are steps in the direction of improving the existing coils to get a better knowledge and understanding of MSK diseases such as Rheumatoid Arthritis and Osteoarthritis. The hardware can aid our study of ligament reconstruction and development. The high density array and transmit coil design for hand / wrist also demonstrates the benefits of the obtained SNR at 7 T while maintaining SAR within limits. This design is a contribution towards optimizing hardware at high field strength, to make it clinically acceptable and approved by regulatory bodies. / Die Magnetresonanztomographie mit Feldstärken bis zu 3 T ist zu einer Standard- Diag-nosemethode für eine Vielzahl von Erkrankungen und Verletzungen geworden. Das hat mehrere Gründe, angefangen von ihrer nicht-invasiven Natur bis hin zu ihrer Fähigkeit,hochaufgelöste Bilder von inneren Organen und Weichteilen zu erhalten. Trotz enormer Fortschritte stellt die MR-Bildgebung bestimmter anatomischer Regionen oder bei bestimmten Anwendungen und Fragestellungen eine besondere Herausforderung dar. Eine dieser Anwendungen ist die MR-Bildgebung am Muskuloskelettalen System (MSK). Die vorliegende Arbeit befasst sich mit einigen schwierigen Fragestellungen innerhalb der MSK-Bildgebung aus aus der Perspektive der Hardware-Entwicklung: mit Spulendesigns für die dynamische Bildgebung des Knies und mit MR-Bildgebung der Hand bei hohen Magentfeldern. Nach einer kurzen Einführung in die MR-Physik werden in Kapitel 1 dann verschiedene Typen von Hochfrequenz-Spulen (HF-Spulen) vorgestellt, gefolgt in Kapitel 2 mit Abhandlungen des Designs von Birdcage-Spulen, Phased Arrays und deren Charakterisierung. Außerdem enthält das Kapitel Messungen, Berechnungen und Simulationen, die im Rahmen dieser Arbeit durchgeführt wurden, um einen quantitativen Eindruck von den erläuterten Konzepten zu vermitteln. Kapitel 3 befasst sich mit dem Aufbau eines Phased-Array-Empfängers für die dynamische Bildgebung des Knies an einem großen Tiermodell (Minipig) bei 1,5 T. Es werden detailliert verschiedene Aspekte erläutert, die bei der Konstruktion eines RF-Arrays berücksichtigt werden müssen. Des Weiteren beschreibt das Kapitel die komplexe Geometrie des Zielbereichs am Knie des Minipigs und die Gründe für ein Array mitvielen Spulenelementen. ...

Intra-cellular sodium (23Na) concentration is directly related to cellular health. Thus, sodium magnetic resonance imaging (MRI) can provide metabolic information on tissue health that a routine clinical (proton) MRI cannot. 23Na-MRI could be a valuable tool to assist physicians in the diagnosis, prognosis, and monitoring of a variety of pathologies. However, due to factors that include quantum mechanical limitations and biological restrictions, the signal-to-noise ratio (SNR) of a sodium scan is much lower than that of a standard proton scan, which limits the practicality of 23Na-MRI in a clinical setting. This project looks to improve the viability of 23Na-MRI and focuses on an often overlooked facet of MRI development, the radio frequency (RF) coil. Fractal antennas have been used in telecommunication systems for years, and are generally exploited for their compact nature, allowing for the same performance of a larger antenna, in a smaller space. They have also been shown to be capable of a wider transmission bandwidth (BW) than a standard antenna and with MRI applications they have been shown to provide a small SNR increase in proton imaging. It is hypothesized that a surface coil with a Koch snowflake fractal geometry can provide increased SNR for a sodium MRI scan, compared to that of a standard circular geometry coil, by producing a more homogeneous magnetic field in both space and frequency. To test the hypothesis two coils, one circular and the other a Koch snowflake fractal, were simulated. The simulated magnetic fields were compared on their homogeneity and magnitude before the two coils were constructed and implemented with a variety of sodium MRI scans. B1+ maps were acquired to measure RF field homogeneity, and SNR was determined for both coil geometries. The coils were also tested for their homogeneity over varied transmit BWs by comparing images with various field of view (FOV) sizes. Finally the coils were compared for clinical viability in a test of healthy human knee imaging. The circular coil had a more homogeneous B1+ field than the fractal at depths between 10-40mm, and had a higher SNR in its produced images. The circular coil acquired more signal in vivo which provided a higher detail image, but the fractal coil's SNR was higher due to reduced noise. The fractal coil performed better over a wider BW which indicates that further research should be conducted into the applications of fractal coils in multi-nuclear MRI scans. / Thesis / Master of Applied Science (MASc)

La genèse d’un anévrysme intracrânien n’est pas uniquement due à un effet mécanique mais à un ensemble d’éléments biologiques. Parmi eux, le thrombus intra-anévrysmal a un rôle majeur car il est le site d’activation de nombreuses métalloprotéinases et d’une protéolyse importante. Cependant, le thrombus du sac anévrysmal est également un substrat indispensable à la cicatrisation des anévrysmes après traitement endovasculaire car il sert de support à la recolonisation de l’anévrysme par des cellules mésenchymateuses. Dans les différents travaux présentés dans cette thèse, nous avons pu analyser une partie des phénomènes biologiques impliqués dans le succès ou l’échec des traitements endovasculaires. Les travaux présentés sont basés sur des expérimentations dans le modèle d’anévrysme à l’élastase chez le lapin et traités par coils, flow-diverters ou dispositifs intra-sacculaires (WEB). Ces travaux permettent de mieux comprendre les mécanismes biologiques mis en jeu par les différents traitements endovasculaires. L’analyse de ces phénomènes est indispensable pour comprendre les causes d’échec, mais aussi afin de développer de nouveaux outils biologiquement actifs pour le traitement des anévrysmes intracrâniens. Nous proposons ainsi le développement de stents flow-diverters biologiquement actifs. Nous proposons également trois approches différentes de thérapie cellulaire par voie endovasculaire, utilisant des cellules souches mésenchymateuses autologues, permettant une recolonisation du thrombus intraanévrysmal et une cicatrisation accélérée de l’anévrysme. Au total, le traitement des anévrysmes intracrâniens ne peut plus être basé uniquement sur des considérations mécaniques. Le développement des futurs dispositifs endovasculaires devra inclure une dimension biologique pour optimiser la cicatrisation complète des anévrysmes intracrâniens. / The genesis of an intracranial aneurysm is not only due to a mechanical effect but to a set of biological elements. Among them, intra-aneurysmal thrombus plays a major role, as it is the site of activation of many metalloproteinases and an important site of proteolysis. However, the thrombus of the aneurysmal sac is also crucial for the healing of the aneurysm after endovascular treatment, because it serves as a support for the recolonization of the aneurysm by mesenchymal cells. In the various works presented in this thesis, we analyzed some of the biological phenomena involved in the success or failure of endovascular treatments. The presented works are based on experiments in the elastase aneurysm model in the rabbit and treated with coils, flow-diverters or intra-saccular devices. This work enables to better understand the biological mechanisms involved in the various endovascular treatments. The analysis of these phenomena is essential to understand the causes of failure, but also to develop new biologically active devices for the treatment of intracranial aneurysms. We propose the development of biologically active flow-diverter stents. We also propose three different approaches of endovascular cell therapy, using autologous mesenchymal stem cells, allowing recolonization of the intra-aneurysmal thrombus and accelerated healing of the aneurysm. The treatment of intracranial aneurysms can no longer be based solely on mechanical considerations. The development of future endovascular devices should include a biological dimension to improve the complete healing of intracranial aneurysms

A fourth gradient channel was implemented to provide slice dependent RF coil phase compensation for arrays in dual-sided or "sandwich" configurations. The use of highly parallel arrays for single echo acquisition magnetic resonance imaging allows both highly accelerated imaging and capture of dynamic and single shot events otherwise inaccessible to MRI. When using RF coils with dimensions on the order of the voxel size, the array coil element phase patterns adversely affect image acquisition, requiring correction. This has previously been accomplished using a pulse of the gradient coil, imparting a linear phase gradient across the sample opposite of that due to the RF coil elements. However, the phase gradient due to the coil elements reverses on opposite sides of the coils, preventing gradient-based phase compensation with sandwich arrays. To utilize such arrays, which extend the imaging field of view of this technique, a fourth gradient channel and coil were implemented to simultaneously provide phase compensation of opposite magnitude to the lower and upper regions of a sample, imparting opposite phase gradients to compensate for the opposite RF coil phase patterns of the arrays. The fourth gradient coil was designed using a target field approach and constructed using printed circuit boards. This coil was integrated with an RF excitation coil, dual-sided receive array, and sample loading platform to form a single imaging probe capable of both ultra-fast and high resolution magnetic resonance imaging. By employing the gradient coil, this probe was shown to simultaneously provide improved phase compensation throughout a sample, enabling simultaneous SEA imaging using arrays placed below and above a sample. The fourth gradient coil also improves the acquisition efficiency of highly accelerated imaging using both arrays for receive. The same imaging probe was shown to facilitate accelerated MR microscopy over the field of view of the entire array with no changes to the hardware configuration. The spatio-temporal imaging capabilities of this system were explored with magnetic resonance elastography.

No description available.

O objetivo deste projeto é o desenvolvimento de transdutores de RF tipo gaiola (birdcage coil) e sela (saddle coil), com desenho especial inovador, que mantém elementos com comprimento elétrico constante, para um campo magnético de 2 Tesla. Este transdutor deve permitir o estudo e também o desenvolvimento de novas metodologias em imagens e espectroscopia por RMN de pequenos primatas como marmosets, exigidos pela interação deste grupo com o programa CInAPCe (Cooperação Interinstitucional de Apoio a Pesquisas sobre o Cérebro). Essas bobinas também se destinam ao uso em metodologias de imagens e espectroscopia ?in vivo? por Ressonância Magnética Nuclear (RMN), que utilizem pulsos de RF caracterizados como Pulsos Adiabáticos. Outra perspectiva é a continuação do desenvolvimento de bobinas de RF que operam segundo as características de bobinas de superfície, que pode resultar deste trabalho. Os resultados nos mostram que para as dimensões e freqüência utilizadas, a interação entre os condutores que compõe os transdutores é mais relevante do que a perda de fase da corrente elétrica devido às diferenças no comprimento elétrico. O cruzamento entre os condutores consiste num bom desenho alternativo, melhorando a homogeneidade de campo de RF e a relação sinal/ruído. / The purpose of the present work is the development of birdcage- and saddlelike RF transducers which were based on a special and innovative approach. The aim of this design is to keep constant the electromagnetic length of its elements, for a magnetic field intensity of 2 Tesla. These resonators will allow both the study and the development of new imaging and spectroscopy methods addressed to the NMR research on small primates such as marmosets. Such studies are part of the cooperation between this group and other participants of the CInAPCe program, Portuguese acronym for Inter-institutional Cooperation to Support Brain Research. Other perspective is the continuing development of RF coils whose characteristics are similar to surface coils, also designed for anatomic specific studies of imaging and in vivo NMR spectroscopy that take advantage from the use of RF pulses characterized as Adiabatic Pulses. From the results it could be verified that, for the frequency and dimensions used, the interaction between the conductive paths present in the transducers is more significant than the electric current phase losses due to differences in electric path. The crossing of the conductive paths constitute a good alternative design, improving the RF field homogeneity and the signal to noise ratio.

O objetivo deste projeto é o desenvolvimento de transdutores de RF tipo gaiola (birdcage coil) e sela (saddle coil), com desenho especial inovador, que mantém elementos com comprimento elétrico constante, para um campo magnético de 2 Tesla. Este transdutor deve permitir o estudo e também o desenvolvimento de novas metodologias em imagens e espectroscopia por RMN de pequenos primatas como marmosets, exigidos pela interação deste grupo com o programa CInAPCe (Cooperação Interinstitucional de Apoio a Pesquisas sobre o Cérebro). Essas bobinas também se destinam ao uso em metodologias de imagens e espectroscopia ?in vivo? por Ressonância Magnética Nuclear (RMN), que utilizem pulsos de RF caracterizados como Pulsos Adiabáticos. Outra perspectiva é a continuação do desenvolvimento de bobinas de RF que operam segundo as características de bobinas de superfície, que pode resultar deste trabalho. Os resultados nos mostram que para as dimensões e freqüência utilizadas, a interação entre os condutores que compõe os transdutores é mais relevante do que a perda de fase da corrente elétrica devido às diferenças no comprimento elétrico. O cruzamento entre os condutores consiste num bom desenho alternativo, melhorando a homogeneidade de campo de RF e a relação sinal/ruído. / The purpose of the present work is the development of birdcage- and saddlelike RF transducers which were based on a special and innovative approach. The aim of this design is to keep constant the electromagnetic length of its elements, for a magnetic field intensity of 2 Tesla. These resonators will allow both the study and the development of new imaging and spectroscopy methods addressed to the NMR research on small primates such as marmosets. Such studies are part of the cooperation between this group and other participants of the CInAPCe program, Portuguese acronym for Inter-institutional Cooperation to Support Brain Research. Other perspective is the continuing development of RF coils whose characteristics are similar to surface coils, also designed for anatomic specific studies of imaging and in vivo NMR spectroscopy that take advantage from the use of RF pulses characterized as Adiabatic Pulses. From the results it could be verified that, for the frequency and dimensions used, the interaction between the conductive paths present in the transducers is more significant than the electric current phase losses due to differences in electric path. The crossing of the conductive paths constitute a good alternative design, improving the RF field homogeneity and the signal to noise ratio.

The detection of cellular events is central to understanding biomoleculer processes as well as aid in therapeutic intervention strategies. One of the most fascinating biomoleculer events during the life cycle of a cell is proteolytic cleavage of proteins by enzymes known as proteases. Proteases are ubiquitous and participate in essential functions such as fertilization, embryo development, cell cycle regulation, immune response, tissue remodeling and programmed cell death. As proteases are involved in fundamental cellular processes any dysregulation of protease activity is usually associated with a diseased state. Thus methods for detection of protease activity are desirable as it may facilitate the identification of many pathological conditions which are associated with the aberrant expression and activity of proteases.Towards the goal of a general and modular strategy we have utilized split protein reassembly and coiled coils to develop genetically encoded sensors for detection of proteases. We established our first generation protease design utilizing split firefly luciferase and anti-parallel coiled coils and detected Tobacco Etch Virus (TEV) as a model protease. Two further iterations of the coiled-coil design led to the development of second and third generation of protease sensors which showed substantial improvement in the sensor response and was applied towards detection of therapeutically relevant proteases such as caspase-3, prostate specific antigen (PSA), ß-secretase and calpain-1.We applied our methodolgy to develop protease biosensors for the detection of a family of cysteine protease known as caspases. Caspases are involved in programmed cell death and their misregulation is implicated in cancer as well as neurodegenerative disorders. The panel of caspase biosensors was utilized to investigate caspase cleavage specificity as well as caspase activation in mammalian cytosolic extracts and live mammalian cells. Perhaps more importantly, we discovered cross talk between members of the caspase family which perform different biological functions.Finally, we detail our progress towards mimicking a naturally occurring multicomponent complex formed during programmed cell death, known as the apoptosome which leads to the activation of caspases. We have successfully utilized principles of self assembly and multivalency to assemble multi component complexes which exhibit proteolytic activity similar to the natural apoptosome.

No description available.