Thesis (M.S. in Meteorology and Physical Oceanography)--Naval Postgraduate School, September 2003. / Thesis advisor(s): Philip A. Durkee, Carlyle H. Wash. Includes bibliographical references (p. 49-51). Also available online.

Phosphorus (P) has long been acknowledged as a vital nutrient for living organisms and is a key factor responsible for the fresh water eutrophication. Our understanding of the phosphorus cycle has been limited by: (1) the common assumption that all P in the environment occurs primarily as phosphates and (2) by the limited analytical methods available to identify P speciation. In an attempt to understand the distribution and chemistry of phosphorus within a freshwater system we must be able to identify individual P species. To this end, we used a coupled High Performance Liquid Chromatograph (HPLC) - Inductively Coupled Plasma Mass Spectrometer (ICPMS) to determine concentrations of orthophosphate (+5), phosphite (+3) and hypophosphite (+1) in aqueous samples using methods modified from IC techniques developed by Ivey & Foster (2005) and Pech, et al. (2009) and Atlas et al. (in prep). The identification of different P species provides insight pertaining to contamination, bioavailability and sustainability within a freshwater system. Thirty-two individual water samples were collected from six different bodies of freshwater in the Tampa Bay area between the months of November 2012 to March 2013. The freshwater samples collected were from river and pond/swamp water locations. Two sampling sites were chosen at each location. At each site, one sample was collected from the water's surface and a second sample was collected from the sediment pore water. When depth was sufficient a third sample was obtained from the midpoint between the surface and sediment. Analytical results show that redox reactions of P occur in all freshwater samples collected as identified by HPLC-ICP-MS analysis. Our data show that the distribution and concentration of reduced P is controlled primarily by pH, and secondarily by water circulation, ORP and sediment type. Our results also imply biologic influence as a potential primary control of reduced P flux. Additional samples must be collected in order to quantify and differentiate the processes controlling P speciation. The ability to identify P speciation raises many questions concerning the validity of current methods used to measure P; other forms of reduced P may be present. Additional sample analysis will be necessary to determine how and if reduced forms of P affect the P cycle.

There are 1,305 Superfund Sites on the United States Environmental Protection Agencies National Priorities List that may require remediation due to the environmental or human health risks associated with subsurface contamination. The contaminants present at these sites and others vary with respect to their physical and chemical properties which dictate the selection of appropriate remediation technologies. In-Situ Thermal Desorption (ISTD) has been studied as a remediation technique for removing many recalcitrant contaminants from soil. ISTD involves passing electrical current through heating elements in wells and removing contaminants through heater/vacuum wells. Heating occurs by heat conduction through the soil. At high temperatures, even relatively low volatility contaminants can be vaporized, removed by vacuum and treated with an on-site recovery system. The main objective of this research was to design and test a laboratory apparatus scaled to a typical ISTD field site and to use it to conduct experiments that could be used to aid in the validation of the STARS numerical simulator. A dimensional analysis was done on the governing energy balance equation to determine the most important scaling groups for the ISTD process so the laboratory experiments could be scaled up to the field. The laboratory apparatus was modeled after a symmetry element of the hexagonal field pattern and a triangular glass prism was constructed for heated sandpack experiments. Temperature data was measured in dry sand, sand partially saturated with water, and sand with both water and PCE added to it. The apparatus was made of glass so that the behavior of the PCE contaminant could be observed when the sand was heated. / text

No description available.

Refuges of non-Bt cotton are used to delay Bt resistance in the pink bollworm (Pectinophora gossypiella, Lepidoptera: Gelechiidae), a pest that eats cotton seeds. Contamination of refuges by transgenic Bt cotton could threaten the efficacy of such refuges by increasing the relative survival of larvae that carry alleles for Bt resistance. Here I compared contamination levels in refuges of varying configuration and distance from Bt. I found two types of contamination at low rates in refuges: outcrossing by Bt pollen and adventitious Bt plants. Unexpectedly, outcrossing did not differ between refuge configurations, and did not decrease as distance from Bt fields increased, perhaps because Bt plants in refuges acted as the main Bt pollen source. Bioassays, conducted to evaluate the impacts of contamination on pink bollworm resistance, indicated that Bt plants in refuges may increase the frequency of resistance alleles at a higher rate than outcrossing by Bt plants.

A major challenge in the manufacturing of micro and nano devices is the cleaning, rinsing, and drying of very small structures. Without a technology for in situ and real-time monitoring and controlling, the rinse processes that account for a significant fraction of the total processing steps use a large amount of water and energy perhaps unnecessarily. This "blind" processing approach leads to waste that can have significant economic and environmental impacts. An electrochemical residue sensor (ECRS) has been developed and is aimed at in situ and real-time measurement of residual contamination inside the micro and nano structures. Using this technology, the mechanisms and bottlenecks of cleaning, rinsing, and drying can be investigated and the processes can be monitored and controlled.An equivalent circuit model was developed to assist the design of the sensor; its validity was proved by the first prototype. The simulation results and the experimental data predicted a good sensitivity in a wide range of operational frequency. To use the sensor in a practical rinse tank setup, the sensor-on-wafer prototype was designed and fabricated. Both the fab-scale and the lab-scale tests were performed and results illustrated many successes. The sensor is the first and the only available technology that provides the in situ and real-time cleanness information in the microstructures during the rinse processes. The sensor results distinguished four different types of rinse processes and showed high sensitivity to the ionic concentration change in the microstructures. The impacts of cleaning and rinsing parameters such as flow rate, temperature, cleaning solution concentrations, and process time on the sulfuric acid rinsing efficiency were investigated by using the sensor. The investigation discovered that sulfuric acid rinsing is a two-stage process: a flow-control stage and a desorption-control stage. A comprehensive rinse model was developed to correlate the transport process and the trench impedance that is the sensor's signal. This model combined with the experimental data proved that increasing flow rate in the overflow rinse has a low efficiency for the rinse processes controlled by the surface reactions. The model, for the first time, shows the dynamics of the charging of the silicon dioxide surface and the dynamics of the potential build-up in the solution. It also discovered that the cation rinsing is a challenge if the cation adsorbs on or reacts with the surface.

Recent theories posit that cognitive factors explain the development and maintenance of contamination fears associated with obsessive compulsive disorder (OCD). Few studies to date have aimed to establish causality or temporal precedence for cognitions predicting OCD-relevant distress and avoidance. The current study used a prospective design to assess threat appraisals, personality traits, and obsessive compulsive symptoms in an unselected sample of university students and community members (N = 105) several days prior to a contamination behavioural approach task (BAT) in a public washroom. Results of the hierarchical regressions demonstrated that prospective danger appraisals significantly predicted both disgust and avoidance on the BAT, even when controlling for neuroticism, disgust sensitivity, and OCD symptoms. In contrast, looming germ spread appraisals and responsibility appraisals were not significant predictors of the BAT. Results from in vivo distress ratings and implicit reaction time data indicated that disgust is more strongly associated with contaminants compared with anxiety. The findings of this research suggest that psychological treatment for contamination concerns should include monitoring of disgust as a process and outcome variable in exposure paradigms, and focus on reappraisal of danger estimates related to disease in cognitive paradigms.

The Cataraqui River, which drains 930 square km of watershed before emptying into the inner harbour of Kingston, Ontario (pop: 113,000), has a long history of anthropogenic use. More than 40 industries have existed within the inner harbour over the last century, and while many of these industries are no longer present, the properties that they operated on remain to the present day as potential sources of persistent contamination. This study examined total mercury (THg) concentrations in depth profiles of 21 sediment cores within the inner harbour. THg in pore waters was measured in some selected cores along with methylmercury (MeHg), and total organic carbon measured as % Organic Matter (OM). Results show that the spatial distribution of THg in the surface sediment is not homogenous; concentrations in surface sediment along the southwestern shoreline, adjacent to the former industrial properties, are significantly greater than the rest of the inner harbour, and above the severe effect limit (2000 μg/kg) guideline for sediment. MeHg was detected in some sediment cores, and was found to have a significant, positive correlation with [THg] in surface sediment. THg in pore water was below detection limits in most cores, indicating possible strong associations with sediments, however OM only showed significant, positive correlations with THg in one core sampled. To determine the sources of Hg to sediments, soils, runoff and storm sewer discharges near high concentration sediments were measured for THg. Hg was not detected in storm sewers, but was detected in terrestrial soil near the Kingston Rowing Club at a concentration of more than 4000 μg/kg. Significant [THg] was detected in runoff draining shoreline soils, indicating that erosion from terrestrial sources may be an ongoing source of Hg to sediment. Since [THg] was correlated to the [MeHg] in surface sediment, reducing the amount of Hg entering the river from terrestrial sources may reduce the amount of bioavailable Hg in sediments of the inner harbour. / Thesis (Master, Biology) -- Queen's University, 2007-11-01 19:12:24.364

<p>Listeria monocytogenes is a Gram-positive bacterium responsible for listeriosis, a food-borne disease, which may result in severe illness and possible death. The importance of L. monocytogenes as a food-borne pathogen has been recognized since the 1980's when a correlation between the cunsumption of contaminated foodstuffs and human listeriosis outbreaks was observed. Listeriosis occurs with the ingestion of contaminated foods. The aim of this study involved developing DNA based methods to aid the food industry for the fast detection of L. monocytogenes in food products. Therefore assays were developed in such a way that they will have potential applications in the food idustry.</p>

The fluorodinitrobenzene (FONB), succinic anhydride (SA), dansyl chloride (DAN), dye-binding lysine (OBL), total lysine (TL), ninhydrin (NIN) and Tetrahymena lysine (TET) methods were compared for their ability to assess available lysine in soyaprotein heated in the absence or presence of glucose, lactose or xylose and in formaldehyde-treated lactalbumin. The reactive lysine methods showed comparable sensitivity to lysine damage in soyaprotein heated in the absence of sugar, the results indicating the presence of acid labile isopeptides and unidentified acid stable derivatives. Results for soyaprotein heated with glucose, lactose or xylose showed that the type of sugar and the extent of heat treatment has a strong influence on the progress of the Maillard reaction. Furthermore since fructoselysine (F-L) and lactulosyl-lysine (L-L) are colourless up to 30% loss of available lysine can occur without any change in product colour. The FONB method is the most sensitive for mildly damaged glucose-soya samples followed by DAN or OBL, SA and TL whereas for mildly damaged lactose-soya samples the order is OBL, FONB, SA, TL and DAN. For severely damaged samples the DAN or SA methods were the most sensitive followed by OBL, FONB and TL. Formylation of lactalbumin occurred more readily at higher formaldehyde concentrations. Exposure time had less effect while pH (5 and 9) had no effect. Methylene derivatives reached maximum levels sooner than the methylol compounds. Lysine and tyrosine but not histidine formed methylene bridges while tyrosine was found to condense with free formaldehyde during acid hydrolysis raising questions as to the interpretation of similar studies reported in the literature. The FONB, OBL and DAN methods were all very sensitive to this type of damage with the NIN and TL methods being less sensitive and the SA method being completely unsuitable. The TET assay is unsuitable for 'early' Maillard damage since at low sample-N levels growth is stimulated by its ability to utilise unavailable F-L and L-L while at higher N-levels growth is inhibited. No single method is most suitable for all types of damage. Furthermore, all except DAN and DBL are either too long, rather complicated, require expensive equipment or involve the use of dangerous chemicals. The DAN method appears promising but the problem of converting arbitrary fluorescence units to lysine values needs to be overcome. The DBL is recommended for routine analysis since it is simple, economical and highly sensitive to all lysine damage provided care is taken to optimise dye-binding for each type of material analysed. / Thesis (Ph.D.)-University of Natal, Pietermaritzburg, 1985.