The decline of coral reef habitats has been witnessed on a global scale, with some of the most dramatic decline occurring in the florida keys. as remote sensing can provide a synoptic view of coral reef ecosystems, 28 landsat images (1984-2002) were utilized to study water clarity and habitat change. first, the data were used to derive the diffuse attenuation coefficient (kd, m-1), a measure of water clarity, for 29 sites throughout the florida keys national marine sanctuary (fknms). landsat-derived kd values from bands 1 (blue) and 2 (green) provided useful information for 26 of 29 sites, whereas band 3 (red) provided no consistent data due to the high absorption of red light by water. it was not possible to assess long-term temporal trends as data were acquired, at most, twice a year. spatial variability was high between sites and between regions (upper, middle and lower keys) for bands 1 (0.019 m-1 - 0.060 m-1) and 2 (0.036 m-1 - 0.076 m-1). the highest kd values were f ound in the upper keys, followed by the middle and lower keys, respectively. this trend was corroborated by in situ monitoring of kd(par). second, the data were used to assess benthic habitat changes in eight coral reef sites located in the fknms. a mahalanobis distance classification was trained for four classes using in situ ground-truth data. overall coral habitat decline was 61% (3.4%/y), from 19% (1984) to 7.7% (2002). in situ monitoring data acquired by the coral reef evaluation and monitoring project (cremp) for the eight reef sites (1996-2002) showed a loss in coral cover of 52%, whereas the landsat-derived coral-habitat cover declined 37% for the same time period. a trend comparison between the full cremp percent coral cover data (1996-2004) and the full landsat-derived coral habitat class (1984-2002) showed no significant difference between the rates of change (ancova f-test, p = 0.303). The derivation of Kd and benthic habitat maps produced from Landsat data could provide c oastal marine managers another tool to help in the decision-making process.

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I examined the hypothesis that high variability in Sea Surface Temperature (SST) and ocean color are associated with higher coral cover and slower rates of decline of coral cover within the Florida Keys National Marine Sanctuary (FKNMS). Synoptic SST time series maps, covering the period 1994-2005, were constructed for the FKNMS with data collected using the National Oceanic and Atmospheric Administration (NOAA) Advanced Very High Resolution Radiometer (AVHRR) satellite sensors. The SST data were compared with coral cover time series assessments at 36 sites conducted by the Coral Reef and Evaluation Monitoring Program (CREMP; 1996-2005), sponsored by the Environmental Protection Agency and the State of Florida. Out of the 36 stations, Smith Shoals routinely experienced very different and extreme environmental conditions relative to the rest of the stations, including extreme salinity, suspended sediments, and "black water" events that led to the death of coral reef organisms such as in 2002. Among the other 35 stations, sites that experienced moderately higher SST variability (mean variance > 6) relative to other sites showed a trend toward higher percentage coral cover (r=0.62, p=6.33x10-5, N=35) and relatively slower rates of decline (r=0.41, p=0.02, N=35) over the 12-year study period. The results suggest that coral reefs sites that are continuously exposed to high but not extreme variability in temperature may develop resilience against episodes of extreme cold or elevated SST. Variability of suspended sediments and water clarity were estimated using satellite-derived, normalized water-leaving radiance products. Ocean color data were obtained from the Sea-viewing Wide-Field-of View Sensor (Sea WiFS) from 1998 to 2005. Normalized water-leaving radiance at 443 (Lwn443) was used as a proxy to examine variability in water clarity, and normalized water-leaving radiance at 670 (Lwn670) was used as a proxy to study variability in suspended sediments. A weak relationship was identified between variability of Lwn443 and Lwn670 and coral cover as estimated by CREMP assessments in 2005 (r=0.43, p = 0.01, N=35 and r = 0.47, p = 0.005, N=35, respectively). There was a weak relationship between coral cover change and Lwn670 from 1988 to 2005 (r = 0.46, p = 0.05, N=35), but there no relationship was observed between variability of Lwn443 and change in coral cover (r =0.27, p =0.11, N=35). Further research is required to understand the origin, concentration and composition of dissolved or suspended materials that change the turbidity of waters around reefs of the FKNMS, and whether these changes can be adequately interpreted by examining concurrent satellite imagery. Ultimately, such remote sensing and field research is required to understand how water quality affects the health of coral reefs, and how coral ecosystems adapt to environmental variability.

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