The purpose of this thesis was to provide a revision and characterization of the species of nongeniculate coralline algae previously ascribed to the now defunct genus Porolithon / to provide a modern account of selected taxa from the genus Hydrolithon and descriptions of taxa found to conform the generic delimitation of Hydrolithon and to use a phenetic cluster analysis to determine the taxonomic relationships between the various taxa ascribed to the genera Polorithon and Hydrolithon.

x, 156 leaves : ill. ; 29 cm Notes Typescript. (Another copy on microfilm is located in Archives) Thesis (Ph.D.) -- University of Oregon Includes vita and abstract Bibliography: leaves 150-156

Doctor Scientiae (Biodiversity and Conservation Biology) / The purpose of this thesis was to provide a revision and characterization of the species of nongeniculate coralline algae previously ascribed to the now defunct genus Porolithon; to provide a modern account of selected taxa from the genus Hydrolithon and descriptions of taxa found to conform the generic delimitation of Hydrolithon and to use a phenetic cluster analysis to determine the taxonomic relationships between the various taxa ascribed to the genera Polorithon and Hydrolithon. / South Africa

Philosophiae Doctor - PhD / The aim of this study was to document the intertidal and shallow subtidal species of non-geniculate coralline red algae from the South Africa south coast. The main emphasis of the study are encompassed in four research chapters and one concluding chapter focusing on: 1) the documentation of the non-geniculate coralline red algae occurring along the South Africa south coast; 2) revisiting the Leptophytum-Phymatolithon complex in order to resolve the taxonomic status of species previously ascribed to the genus Leptophytum from South African; 3) starting to prepare modern monographic accounts of the higher taxa; and 4) the production of updated keys to all the currently recognised taxa of non-geniculate coralline algae for South Africa. Although nowhere near complete, here we present our findings and report on the current biodiversity status of the non-geniculate coralline red algae after a further four years of extensive sampling.

Orientador: Fosca Pedini Pereira Leite / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-27T11:20:12Z (GMT). No. of bitstreams: 1 Bueno_Marilia_D.pdf: 1421870 bytes, checksum: 37eb3d9230e7741798f121407dee5d97 (MD5) Previous issue date: 2015 / Resumo: Algas calcáreas articuladas estão presentes em costões rochosos ao redor do mundo e formam densos tapetes, os quais abrigam uma fauna muito rica de invertebrados. Dentre eles, os anfípodes são dominantes e sua associação com estas algas foi investigada. Inicialmente foi feita a caracterização do habitat. A biomassa das algas e a abundância total dos anfípodes não diferiram entre as estações do ano, já a composição de espécies de anfípodes apresentou variação, a qual foi atribuída principalmente ao padrão de ocorrência de duas espécies de hialídeos, Apohyale media e Hyale niger, que são dominantes nas algas calcáreas. A biomassa das algas também não variou conforme exposição à ação de ondas. Diferenças na abundância total dos animais foram observadas, sendo encontrados mais animais nos costões mais expostos às ondas. Neste tópico, os tanaidáceos foram incluídos e apenas duas espécies foram encontradas, cada uma associada à um grau de exposição à ação de ondas. Leptochelia aff. dubia foi encontrada apenas nos costões abrigados, enquanto Zeuxo coralensis apenas em costões expostos. Os tapetes de algas coralinas são verticalmente extensos a ponto de terem características físicas (quantidade de sedimento e tamanho de grãos) e biológicas (abundância e composição de espécies de anfípodes) distintas entre as zonas superior e inferior do mesmo tapete. Após a caracterização do habitat, sua utilização pelos anfípodes foi examinada com relação à estrutura (arquitetura) das algas, a altura de ocorrência das algas no costão rochoso e o papel do sedimento na seleção deste habitat. O volume intersticial foi extremamente variável dentre as cinco algas estudadas entretanto, para todas as algas, quanto maior o volume intersticial, maior a abundância dos anfípodes. O habitat formado pelas coralinas, independente da altura no costão, parece ser o fator mais importante na seleção pelos anfípodes. Com relação ao sedimento, sua retenção nos tapetes de algas não se mostrou sazonal e não foi observada relação com a abundância dos anfípodes. Os experimentos de laboratório corroboraram o padrão observado em campo e não indicaram um importante efeito da adição do sedimento na seleção de habitat pelos hialídeos. A malha intrincada formada pelas frondes das algas calcáreas permite a retenção, além do sedimento e da matéria orgânica associada à ele, de diferentes tipos de alimento como microalgas e componentes da meiofauna. Essa gama de itens alimentares pode ser importante na seleção deste local pelos anfípodes, já que a alimentação da alga em si não ocorre, e explicaria a grande variedade de hábitos alimentares apresentados pelos anfípodes associados. A seleção do habitat de coralinas pode também estar relacionada à proteção contra a dessecação, já que retenção de água entre as frondes mantém o ambiente úmido nos períodos de emersão / Abstract: Articulated calcareous algae are distributed on rocky shores worldwide forming dense mats and harboring rich invertebrate assemblages. Amphipods are dominants and their association with coralline algae was investigated. First, the habitat characterization was done. Algae biomass and amphipods abundance did not differ among seasons, but species composition showed a variable pattern mainly in response to occurrence patterns of the dominant hyalids Apohyale media and Hyale niger. Algae biomass did not vary between degrees of wave exposure, however, more amphipods were found at exposed shores. Tanaids were included and an interesting spatial segregation was observed. Only two species were found, each one associated to a degree of wave exposure. Leptochelia aff. dubia was found at sheltered shores, while Zeuxo coralensis at exposed shores. Coralline mats are wide enough to have distinguished upper and lower zones based on physical (amount of sediment and grain size) and biological (amphipods abundance and species composition) features. After characterizing the habitat, its usage by the amphipods was examined through algae structure (architecture), height on shore and the effect of sediment loads on habitat selection. Interstitial volume was highly variable among the five algae studied and a strong positive relation between interstitial volume and amphipods abundance was observed. Coralline habitat, regardless of the height on shore, was probably the main factor governing habitat selection. Sediment retention at coralline mats was not seasonal and no relation with the amphipods was found. Laboratory experiments corroborate the observed field patterns and added sediment had no effect on habitat selection by the hyalids. The intricate canopy of coralline algae allowed retention, not only of sediment and organic matter, but also of microalgae and meiofauna. This wide array of food items may be important for coralline habitat selection by the amphipods, since they do not feed on coralline itself. In this case, coralline could be an important source of food, allowing the coexistence of amphipods having different feeding habits. Water retention may also play an important role, since habitats are maintained humid during emersion periods / Doutorado / Ecologia / Doutora em Ecologia

As algas calcárias crostosas ou CCA (do inglês Crustose Coralline Algae) têm como principal característica a impregnação de carbonato de cálcio em suas paredes celulares. Este grupo é formado atualmente por três ordens, Corallinales, Hapalidiales e Sporolithales, cuja taxonomia é historicamente problemática por se basear na fase tetrasporofítica, fundamental para qualquer identificação até mesmo em nível de ordem. Em virtude disso, diversos estudos, principalmente nos últimos 10 anos, têm incluído ferramentas moleculares como auxílio à taxonomia morfoanatômica deste grupo. O objetivo deste estudo foi investigar a diversidade e a distribuição das CCA ao longo da costa Brasileira, através de dados moleculares e morfoanatômicos. Para isso, foram utilizados quatro marcadores moleculares, UPA, rbcL-3P, COI-5P e psbA, aliados à imagens de microscopia óptica e microscopia eletrônica de varredura, que resultaram na identificação de pelo menos 37 espécies entre Corallinales, Hapalidiales e Sporolithales. Os resultados obtidos a partir das análises de agrupamento dos quatro marcadores demonstraram que as ordens Corallinales e Sporolithales são monofiléticas, e Hapalidiales constitui um grupo não-monofilético (com exceção do marcador psbA, que resolveu a ordem como grupo monofilético). Os resultados também revelaram existência de uma grande diversidade de espécies e gêneros destas ordens no Brasil, além de espécies novas e ao menos um potencial gênero novo para ciência. O estudo também revelou relações filogeográficas entre espécies do Brasil e do Golfo do México e do Indo-Pacífico. Considerando as três ordens de CCA (Corallinales, Hapalidiales e Sporolithales), este estudo representa a primeira tentativa de desvendar de forma mais ampla a diversidade de espécies CCA encontradas ao longo da costa brasileira, utilizando dados moleculares / The Crustose Coralline Algae (CCA) has as a main distinguishing characteristic the calcium carbonate impregnation in their cell walls. This group currently encompasses three orders, the Corallinales, Hapalidiales and Sporolithales, whose taxonomy is historically problematic because it is based on the tetrasporophytic phase, fundamental to any classification, even at the ordinal level. Therefore, many studies, especially in the last 10 years, have included molecular tools to assist the morphological taxonomy of this group. This study aims to investigate the diversity and distribution of the CCA along the Brazilian coast, through molecular and morphoanatomical data. In order to achieve this aim, four markers were used, UPA, rbcL-3P, COI-5P and psbA, allied to light and scanning electron microscopy, that resulted in the identification of at least 37 species between Corallinales, Hapalidiales and Sporolithales. The results of the cluster analyses of the four markers showed that Corallinales and Sporolithales are monophyletic, and Hapalidiales comprises a non-monophyletic group (with the exception of psbA, which resolved the order as a monophyly). Our results also revealed a great diversity of species and genera of these three orders in Brazil, as well as putative new species and at least a new genus. This study also revealed phylogeographic relationships between Brazilian species and species from Gulf of Mexico and from Indo-Pacific oceans. Considering all the three orders of CCA, this study represents the first broad attempt and effort to unveil the diversity of CCA species found on the Brazilian coast using molecular data

Les crinoïdes sont bien connus pour leurs fossiles, mais la biominéralisation de leurs stades larvaires n’est que peu documentée. La première partie du projet présente le développement des ossicules des trois stades larvaires du comatule Florometra serratissima : doliolaria, cystidienne et pentacrinoïde. Les ossicules du crinoïde démontraient de la plasticité phénotypique et de la désynchronisation dans leur développement. Les crinoïdes étant la classe basale des échinodermes modernes, ceci porte à croire que ces traits étaient aussi caractéristiques des échinodermes ancestraux et auraient joué un rôle dans la radiation hâtive et la grande disparité des échinodermes. Pour notre deuxième étude, comme les patrons de morphologie des crinoïdes et des autres échinodermes sont nombreux et sont régulés par des protéines spécifiques, nous avons vérifié la présence de quatre familles de protéines de la matrice de spicules (SMAP) connues chez les oursins dans les transcriptomes des autres échinodermes et d’autres deutérostomes. La famille des spicules matrix (SM) et l’anhydrase carbonique CARA7LA étaient absentes chez tout autre organisme que les oursins, les protéines spécifiques au mésenchyme (MSP130) étaient présentes en nombres différents chez tous les ambulacraires suggérant de multiples duplications et pertes, et les métalloprotéases étaient nombreuses chez chacun. Le développement des ossicules chez les échinodermes est un sujet qui a gagné en popularité au cours des dernières décennies, spécialement chez les oursins, et inclure les crinoïdes dans ce type d’étude permettra de nous renseigner sur l’origine et l’évolution des échinodermes modernes. / While the fossil record of crinoids is widespread and largely known, biomineralization of their larval stages is poorly documented. The first part of the project focuses on the ossicle development of the three larval stages of the feather star Florometra serratissima: doliolaria, cystidean and pentacrinoid. The ossicles of the crinoid showed phenotypic plasticity and asynchronous development. Crinoids form the basal class of living echinoderms; this prompts one to believe that these traits were also characteristic of the ancestral echinoderms and would have played a role in the early radiation and large disparity of the modern echinoderms. For the second study, as patterns of morphology of crinoids and of other echinoderms are numerous and are regulated by specific proteins, we verified the presence of four families of spicule matrix associated proteins (SMAPs) known among sea urchins in transcriptomes of the other echinoderms and deuterostomes. The family of spicule matrix (SMs) proteins and the carbonic anhydrase CARA7LA were absent in any other organism aside from sea urchins, mesenchyme specific proteins (MSP130s) were present in varying numbers in all ambulacrarians suggesting multiple duplications and losses and matrix metalloproteases were numerous in every organisms. The development of ossicles in echinoderms is a topic that has gained popularity in the last decades, especially in sea urchins, and including crinoids in this type of study will inform us about the origin and evolution of the modern echinoderms.

Πρόκειται για μια προοπτικη, συγκριτική, τυχαιοποιημένη, κλινική και ακτινολογική μελέτη της εξέλιξης της πώρωσης οπισθοπλάγιας σπονδυλοδεσίας με τη χρήση είτε αυτόλογου μοσχευματός είτε κοραλλιογενους υδροξυαπατίτη είτε μιγματος των δύο. Μελετήθηκαν 3 ομάδες ασθενών Α, Β και Γ με 18, 19 και 20 ασθενείς αντιστοιχά. Στην πρώτη ομάδα χρησιμοποιήθηκε μόνο αυτόλογο μόσχευμα, στη δεύτερη κοραλλιογενής υδροξυαπατίτης και αυτόλογο μόσχευμα και στην τρίτη ομάδα μόνο κοραλλιογενής υδροξυαπατίτης. Η εκτίμηση ήταν κλινική και ακτινολογική. Διαπιστώθηκε ότι η ενσωμάτωση του κοραλλιογενούς υδροξυαππατίτη χρειάζεται επααρκή αποφλοιωμένη οστική επιφάνεια και η τοποθετηση του στα οπισθοπλάγια σπονδυλικά στοιχεία δεν οδηγεί σε σπονδυλοδεσία. Όμως η τοποθετησή του κοραλλιογενούς υδροξυαπατίτη στα οπίσθια σπονδυλικά στοιχεία οδηγεί σε σπονδυλοδεσία στον αναμενόμενο χρόνο. / This prospective longitudinal randomized clinical and radiological study compared the evolution of instrumented posterolateral lumbar and lumbosacral fusion using either coralline hydroxyapatite or iliac bone graft or both. Three comparable groups A, B, and C were evaluated. In group A only autograft was used. In group B autograft and coralline hydroxyapatite were used and in group C only coralline hydroxyapatite was used as graft extender. The goups were evaluated clinically and radiologicalý It was found that coralline hydroxyapatite applied in the poserolateral spinal elements does not leed to a spinal fusion because of lack of bleeding osseous surfaces. However if coralline hydroxyapatite is applied in the laminae of the posterior spine it leeds to spinal fusion within the expected time.

Climate variability in the North Atlantic has been linked in part to the North Atlantic Oscillation (NAO). The NAO influences marine ecosystems in the northwestern Atlantic and the transport variability of the cold Labrador Current (LC). Understanding historic patterns and predicting future changes in LC transport require long-term and high-resolution climate records that are not available from instrumental data sets. This thesis presents the first century-scale sea surface temperature (SST)reconstructions from the Northwestern Atlantic using Mg/Ca ratios in the long-lived crustose coralline algae Clathromorphum compactum. which is characterized by a high Mg-calcite skeleton exhibiting annual growth increments. Results indicate strong correlations between interannual variations in Mg/Ca ratios and instrumental SST. The 131-year algal Mg/Ca record reveals NAO-type periodicities and evidence of past cold events and warming periods associated with basin-wide ecosystem shifts. Negative correlations between LC volume transport and algal Mg/Ca reflect the cooling influence of the LC on eastern Canadian shelf ecosystems.

Climate variability in the North Atlantic has been linked in part to the North Atlantic Oscillation (NAO). The NAO influences marine ecosystems in the northwestern Atlantic and the transport variability of the cold Labrador Current (LC). Understanding historic patterns and predicting future changes in LC transport require long-term and high-resolution climate records that are not available from instrumental data sets. This thesis presents the first century-scale sea surface temperature (SST)reconstructions from the Northwestern Atlantic using Mg/Ca ratios in the long-lived crustose coralline algae Clathromorphum compactum. which is characterized by a high Mg-calcite skeleton exhibiting annual growth increments. Results indicate strong correlations between interannual variations in Mg/Ca ratios and instrumental SST. The 131-year algal Mg/Ca record reveals NAO-type periodicities and evidence of past cold events and warming periods associated with basin-wide ecosystem shifts. Negative correlations between LC volume transport and algal Mg/Ca reflect the cooling influence of the LC on eastern Canadian shelf ecosystems.