Littoral zone primary production is under-studied relative to the pelagic zone, despite recent work indicating its importance to the lake as a whole. Benthic extracellular material, shown to be important for food web dynamics and stabilization of the surrounding ecosystem in the marine intertidal, is even less frequently studied in lakes. I examined the environmental and community level drivers of benthic primary production, and found production to increase over the summer and to decrease with disturbance. I also found that maximum photosynthesis and efficiency under sub-saturating light both increased with depth, contrary to the existing, laboratory-derived paradigm of a trade-off between the two. I also examined how benthic primary production and environmental factors were correlated with the amount of extracellular material. I found that loosely bound colloidal extracellular material decreased with in situ photosynthesis and was affected by algal community composition, whereas tightly bound capsular extracellular material was affected only by date, indicating that capsular material is refractory in lakes just as it is in marine systems. Contrary to what is seen in marine systems, however, there were no direct effects of the environmental factors, possibly the result of physical differences between these systems. I also performed the first cross-ecosystem comparison of extracellular material. Despite relatively few studies from lakes and streams, and methods which have not been standardized, I found that lakes were similar to marine intertidal zones both in their median amounts of extracellular material and their relationships between extracellular material and chlorophyll a. This relationship appeared to be quite different in streams, with very low amounts of extracellular material found at sites with either high or low chlorophyll a concentrations. While the above studies will improve future estimates of lake carbon budgets and whole-lake production, my development of a permutation test for path analysis, and a novel application of the Bayesian principal components analysis, will assist all ecological studies that are often restricted in their sample sizes or compromised by missing data.

Littoral zone primary production is under-studied relative to the pelagic zone, despite recent work indicating its importance to the lake as a whole. Benthic extracellular material, shown to be important for food web dynamics and stabilization of the surrounding ecosystem in the marine intertidal, is even less frequently studied in lakes. I examined the environmental and community level drivers of benthic primary production, and found production to increase over the summer and to decrease with disturbance. I also found that maximum photosynthesis and efficiency under sub-saturating light both increased with depth, contrary to the existing, laboratory-derived paradigm of a trade-off between the two. I also examined how benthic primary production and environmental factors were correlated with the amount of extracellular material. I found that loosely bound colloidal extracellular material decreased with in situ photosynthesis and was affected by algal community composition, whereas tightly bound capsular extracellular material was affected only by date, indicating that capsular material is refractory in lakes just as it is in marine systems. Contrary to what is seen in marine systems, however, there were no direct effects of the environmental factors, possibly the result of physical differences between these systems. I also performed the first cross-ecosystem comparison of extracellular material. Despite relatively few studies from lakes and streams, and methods which have not been standardized, I found that lakes were similar to marine intertidal zones both in their median amounts of extracellular material and their relationships between extracellular material and chlorophyll a. This relationship appeared to be quite different in streams, with very low amounts of extracellular material found at sites with either high or low chlorophyll a concentrations. While the above studies will improve future estimates of lake carbon budgets and whole-lake production, my development of a permutation test for path analysis, and a novel application of the Bayesian principal components analysis, will assist all ecological studies that are often restricted in their sample sizes or compromised by missing data.

Cross-boundary movements of energy and material are ubiquitous. Freshwater ecosystems receive nutrients, dissolved, and particulate organic matter from adjacent terrestrial ecosystems, whereas terrestrial ecosystems mainly receive prey organisms and detritus deposited by physical processes such as floods from freshwater ecosystems. Within lakes, fish are considered as integrators between habitats due to their high mobility, although they often occupy either near-shore littoral or open-water pelagic habitats and develop habitat-specific morphologies. Such intra-population divergence in morphological traits might limit the use of multiple habitats. In this thesis, I first focused on quantity and quality of reciprocal fluxes of particulate organic matter between freshwater and terrestrial ecosystems and responses of recipient consumers. Freshwater ecosystems generally received higher amounts of externally-produced resources than terrestrial ecosystems. Despite this discrepancy, aquatic and terrestrial consumer responses were similar, likely due to the differences in resource quality. Second, I investigated the potential of particulate organic carbon (POC) supporting benthic food webs in lakes; a pathway that has largely been neglected in previous studies. I found that POC can substantially subsidize the benthic food web and that the effects on the benthic food web were transferred to the pelagic habitat, thus emphasizing the importance of benthic pathways for pelagic production. Third, I examined how water transparency can affect intra-population divergence in perch (Perca fluviatilis). I observed that increased water transparency can considerably increase morphological divergence between littoral and pelagic populations likely due to its effects on foraging. Finally, I investigated the effects of such intra-population divergence on littoral-pelagic food web coupling. I found that low morphological divergence corresponded with high overlap in resource use, whereas strong morphological divergence resulted in low overlap in resource use. Here littoral populations mainly utilized littoral resources and pelagic populations primarily utilized pelagic resources, indicating that habitat coupling might be strongly limited when intra-population divergence is high. In conclusion, although different ecosystems seem separated by distinct physical boundaries, these boundaries are often crossed. However, the development of habitat-specific adaptive traits might limit movement between apparently contiguous habitats.

Il est de plus en plus clair que nos écosystèmes sont liés les uns aux autres de façons multiples et parfois complexes. De plus en plus nous identifions de nouvelles façons dont deux systèmes échangent des ressources et de l’énergie. Le rôle de ces échanges et transferts est encore difficile à quantifier. Nous en savons relativement peu sur les interactions de ceux-ci avec des processus locaux et spatiaux, ainsi que sur leur importance relativement à ces processus locaux et régionaux plus connus. À travers ce projet, nous cherchons à éclaircir l’importance relative des subsides particulaires de feuilles (et particulièrement de leur stoechiométrie) sur les communautés littorales d’invertébrés benthiques. Nous avons récolté des invertébrés et des feuilles mortes sur 23 sites à travers 7 lacs relativement isolés de l’influence humaine et avons comparé l’influence de la stoechiométrie de ces subsides à l’influence de facteurs locaux de qualité de l’eau et de facteurs spatiaux. Les résultats suggèrent que l’importance de la qualité nutritive (i.e. stoechiométrie) est secondaire aux facteurs locaux de qualité de l’eau dans des milieux naturels. L’importance des subsides particulaires de feuilles semble être grandement dépendante du contexte et pourrait gagner en importance dans des contextes de fortes perturbations. Les résultats indiquent que la qualité nutritive des subsides de feuilles, leur contenu relatif en azote et phosphore, est associée avec de plus grande abondance de plusieurs taxons. La richesse spécifique n’étant pas affecté, c’est à travers l’équitabilité (i.e. une distribution des abondances plus stable) que la qualité nutritive des feuilles pourrait promouvoir une plus grande biodiversité d’invertébrés benthiques. / It is clear now, more than ever before, that our ecosystems are linked to one another in multiples and sometimes complex ways. The role of these exchanges and transfers is still hard to quantify. We know little of the interactions of these fluxes with local and spatial processes happening in ecosystems, as well as their relative importance compared to local and regional drivers of ecosystem functions and community structure. With this project, we aim to untangle the relative importance of particulate subsidies of leaves (and specifically their stoichiometry) on littoral communities of benthic invertebrates in lakes. We collected invertebrates and leaf litter on 23 sites across 7 lakes somewhat isolated from human influence and compared the influence of leaf litter stoichiometry to the influence of local water quality and spatial variables. Results suggest that nutritive quality of leaf litter (i.e. stoichiometry) is secondary to water quality. Importance of leaf subsidies appears to be context dependant and could gain in importance in systems with higher degrees of disturbances. Results that nitrogen and phosphorus content of leaf subsidies is associated with higher abundances of several taxonomic groups. Species richness being unaffected, it is through higher evenness (i.e. even distribution of abundances) that higher quality of leaves may promote higher biodiversity of benthic invertebrates.