Thesis (Ph. D.)--University of Washington, 2004. / Vita. Includes bibliographical references (p. 126-132).

Apresentamos os resultados do estudo das não-linearidades ópticas de origem eletrônica de duas moléculas da classe dos oligômeros de anilina: o dímero e o tetrâmero. Foram medidas quatro concentrações de tetrâmero, puras e também dopadas em 33 e 100%; uma de dímero pura e outra dopada em 100%. As soluções foram preparadas usando dimetil-sulfóxido (DMSO) como solvente e a dopagem foi realizada com ácido clorídrico. As amostras foram caracterizadas por medidas de absorção linear e fluorescência antes das medidas não-lineares. Obtivemos os valores da primeira hiperpolarizabilidade (?) para todas as amostras, o índice de refração não-linear (n2) do tetrâmero dopado e não dopado, e a absorção não-linear em função da intensidade e da concentração do tetrâmero. As medidas foram realizadas através das técnicas de Varredura-Z, absorção não-linear e espalhamento Hiper-Rayleigh. Os resultados foram interpretados em termos da comparação entre diferentes estados de dopagem e da variação da seção de choque do estado fundamental para o primeiro excitado. / We report on the study of electronic optical non linearities in two aniline oligomers: dimer and the tetramer. Four tetramer concentrations were measured, pure and also 33 and 100% doped; one of dimer non doped another 100% doped. The solutions were prepared using dimethyl sulfoxide (DMSO) as solvent and the doping was performed with hydrochloric acid. The samples were characterized by measurements of linear absorption and fluorescence. We obtained the values of the first hyperpolarizability (?) for all samples, the non linear index of refraction (n2) for non doped and doped tetramer, and the non linear absorption in function of intensity and concentration of the tetramer. The measurements were accomplished through the techniques of Z-Scan, non linear absorption and Hyper-Rayleigh Scattering. The results were interpreted in terms of the comparison among different doping states and of the variation of cross-section for the transition from ground to the first excited states.

Dans une première partie, nous mesurons l'affinité de l'interaction entre [Ru(pby)2dppz]2+ et l'ADN en utilisant la luminescence induite lors de la complexation. Nous étudions l'évolution de l'affinité lorsque la force ionique de la solution augmente. Dans une deuxième partie, nous modifions les extrémités d'un double brin d'ADN en y greffant des fluorophores. De la mesure de transfert d'énergie non-radiative entre ces fluorophores, nous étudions l'évolution de la longueur du complexe. Nous effectuons un dosage d'un double brin de 15 paires de bases d'ADN par le complexe ruthéné. Nous nous servons de la luminescence induite par l'intercalation du groupement dppz. Cependant, l'incrément de luminescence par groupement intercalé n'est pas connu, et nous ne pouvons pas le mesurer en saturant le brin d'ADN. Nous utilisons alors une technique mise au point par Nishida [Method for Measuring the Binding of Small Molecules to Proteins from Binding-Induced Alterations of Physical-Chemical Properties], dans laquelle deux titrations de deux solutions d'ADN de deux concentrations différentes sont effectuées. En utilisant le fait que, lorsque deux solutions d'ADN complexé par le composé ruthéné, possèdent la même luminescence par paire de base , le taux de complexation de ces deux solutions doit être le même, nous pouvons alors déterminer, sans hypothèse supplémentaire, le taux de complexation de l'ADN. De l'évolution de ce taux en fonction avec la concentration de ligand, nous déduisons son affinité pour l'ADN. Nous étudions maintenant le changement de longueur d'un double brin d'ADN de 15 paires de bases, modifié à ses deux extrémités par deux fluorophores : Alexa488 et Alexa568. Lorsque Alexa 488 est porté dans un état excité, il peut se désexciter en transférant de l'énergie de manière non-radiative à Alexa568, qui se désexcite alors en émettant des photons de plus faibles énergie que ceux émis par Alexa488. L'efficacité de ce transfert d'énergie peut être quantifié à partir de la mesure des intensités émises à basse et haute énergie. Elle dépend a priori de l'efficacité couplage (et en conséquence de la distance) entre les deux fluorophores. Nous effectuons des mesures de temps de vie des états excités de chacun des fluorophores. Nous avons observé que l'addition de ligand a pour conséquence une forte inhibition quenching des fluorophores. De l'analyse de l'évolution du temps de vie du fluorophore donneur d'une part et de celui du fluorophore accepteur d'autre part, nous déduisons l'évolution de l'efficacité du transfert d'énergie en fonction de la concentration de ligand. Nous confrontons les résultats obtenus par chacune de ces analyses, et en déduisons finalement, en nous servant de l'analyse de l'équilibre effectuée dans la première partie, l'évolution de la longueur de la chaîne en fonction du taux de complexation / This Ph.D thesis is mainly divided in to 2 parts. The first part is luminescence study, we are interested in the affinity constant (Ka) change under different salinity environments when the complexation of [Ru(bpy)2dppz]2+-DNA arrive equilibrium. In the second part, we focus our attention on the kinetic study by fluorescence which comes from the fluorophore. The distance change between 2 fluorophores is explored when [Ru(bpy)2dppz]2+ intercalates into DNA, which lead to the variation of DNA conformation. Any changes in DNA conformation will be reflected by the efficiency change of fluorescence resonance energy transfer (FRET). Quantitative analysis on the Ru(bpy)2dppz]2+-DNA interaction will be built in the second part. In the first part, the interaction of [Ru(bpy)2dppz]2+ with DNA is studied in a wide range of DNA / [Ru(bpy)2dppz]2+ ratios by using the luminescence signal which comes from complex. The affinity constant (Ka) is explored under different chloride sodium concentration (NaCl=[0, 100 mM]), when the complexation reaches equilibrium. Nishida method is employed to compute the value of Ka without any hypothesis. The value of affinity constant is at the level scale of 106 M-1 which is basically identical to the other researcher’s results. Ka decreased with increasing the concentration of NaCl as we expected. Quantitative analysis on the Ru(bpy)2dppz]2+-DNA interaction will be done in the second part. DNA was modified by different fluorophores at its extremities, 5’ end and 3’ end were labeled with alexa488 (seen as donor) and alexa568 (seen as acceptor), respectively. Our goal is to study the efficiency change of FRET and the change of distance between 2 fluorophores with fluorescence technique when one Ruthenium molecule intercalate in to DAN base pair. Two methods will be employed to achieve our idea. One is that the efficiency of FRET can be computed from the donor emission (alexa488), the other is the efficiency of FRET can be calculated from the acceptor emission (acceptor), the efficiency of FRET is highly dependent on the distance of 2 fluorophores (), any changes in distance will cause the efficiency change. The FRET efficiency decreased when the [Ru(bpy)2dppz]2+ intercalated into DNA structure, which also meant that the distance between 2 fluorohore increased.

Apresentamos os resultados do estudo das não-linearidades ópticas de origem eletrônica de duas moléculas da classe dos oligômeros de anilina: o dímero e o tetrâmero. Foram medidas quatro concentrações de tetrâmero, puras e também dopadas em 33 e 100%; uma de dímero pura e outra dopada em 100%. As soluções foram preparadas usando dimetil-sulfóxido (DMSO) como solvente e a dopagem foi realizada com ácido clorídrico. As amostras foram caracterizadas por medidas de absorção linear e fluorescência antes das medidas não-lineares. Obtivemos os valores da primeira hiperpolarizabilidade (?) para todas as amostras, o índice de refração não-linear (n2) do tetrâmero dopado e não dopado, e a absorção não-linear em função da intensidade e da concentração do tetrâmero. As medidas foram realizadas através das técnicas de Varredura-Z, absorção não-linear e espalhamento Hiper-Rayleigh. Os resultados foram interpretados em termos da comparação entre diferentes estados de dopagem e da variação da seção de choque do estado fundamental para o primeiro excitado. / We report on the study of electronic optical non linearities in two aniline oligomers: dimer and the tetramer. Four tetramer concentrations were measured, pure and also 33 and 100% doped; one of dimer non doped another 100% doped. The solutions were prepared using dimethyl sulfoxide (DMSO) as solvent and the doping was performed with hydrochloric acid. The samples were characterized by measurements of linear absorption and fluorescence. We obtained the values of the first hyperpolarizability (?) for all samples, the non linear index of refraction (n2) for non doped and doped tetramer, and the non linear absorption in function of intensity and concentration of the tetramer. The measurements were accomplished through the techniques of Z-Scan, non linear absorption and Hyper-Rayleigh Scattering. The results were interpreted in terms of the comparison among different doping states and of the variation of cross-section for the transition from ground to the first excited states.

The master´s thesis is focused on design of ADSR filter and voltage controlled amplifier (VCA). Three additional circuits performing analog signal processing are added. Functionality of designed circuits is verified in simulation program. All designed circuits are practically realized. Thesis includes complete design of the mentioned circuits and all necessary informations for its practical realization. All designed circuits are measured and the results are presented.