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The biology and ecology of species of Maireana and Enchylaena: intra- and inter-specific competition in plant communities in the eastern goldfields of Western AustraliaJefferson, Lara Vanessa January 2001 (has links)
Members of the family Chenopodiaceae are routinely used as colonizer plant species to rehabilitate waste and tailings materials on mine sites in the Eastern Goldfields of Western Australia. These are specifically selected for their salt and drought tolerance and also because they are representative of the surrounding natural vegetation. Where these have been sown, competition between several species has been observed. The resulting plant community structure is typically lower in species diversity than the initial seed mixture. This study aimed to determine whether competition was occurring between five of the species commonly used and some of the mechanisms that determine community structure on the rehabilitated areas of waste material. Atriplex bunburyana, Atriplex codonocarpa, Maireana brevifolia, Maireana georgei and Enchylaena tomentosa were selected for the study, which was conducted in three parts. Firstly, different plant densities and species combinations were studied in the field and in a pot trial to determine whether or not competition was occurring and to determine the resources that the plants were competing for. The results of the field trial revealed that competition was occurring, but that it formed only one component of the complex interactions between plant species, density and soil characteristics (i.e. pH and salinity). The pot trial complemented the outcome of the field trial. In addition, it showed that competition was occurring, but was even more pronounced. This was most likely due to the lack of nutrients and the limited availability of space in the pots. / In the second part of this study, the ability of each species to survive and grow when subjected to adverse environmental conditions, such as low moisture availability, high salinity and low light availability, was examined in relation to competition. All five species were treated with different water regimes and soil salinity. Salt played an important role, especially for the Atriplex spp. and M. brevifolia, in ensuring survival when moisture availability was low. The effect of shade on the Maireana species and E. tomentosa was also researched after field observations suggested that M georgei was adversely affected when growing within the canopy of A. bunburyana. The pot trial showed that growth of M. georgei was affected by progressively more shade, whereas E. tomentosa was facilitated by shade. Maireana brevifolia exhibited significant tolerance to low light intensity. In the last part of this three-part study, all five chenopods were screened for allelopathy. Allelopathy may play an important role in determining community structure in successive plant generations. All chenopod species produced allelopathic substances, which were isolated from their leaves. The inhibition of seed germination was found to be speciesspecific and occurred only at certain concentrations. The seed of the Atriplex spp. was not affected by M. georgei and E. tomentosa extracts.
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Novel Constraints in the Search for a Van Der Waals Energy FunctionalDinte, Bradley Paul, n/a January 2004 (has links)
In modelling the energetics of molecules and solids, the need for practical electron density functionals that seamlessly include the van der Waals interaction is growing. Such functionals are still in their infancy, and there is yet much experimentation to be performed in the formulation and numerical testing of the requisite approximations. A ground-state density functional approach that uses the exact relations of the adiabatic connection formula and the fluctuation-dissipation theorem to obtain the xc energy from the density-density response function seems promising, though a direct local density approximation for the interacting susceptibility will fail to yield the vdW interaction. Significant nonlocality can be built into the interacting susceptibility by screening a 'bare' susceptibility, for which a carefully chosen constraint-obeying local approximation is sufficient to yield a non-trivial van der Waals energy [6]. The constraints of charge conservation, and no response to a constant potential, are guaranteed by expressing the bare susceptibility in terms of the double gradients of a nonlocal bare polarisability. for which it should be easier to make an approximation based on physical principles than it would be for the susceptibility. The 'no-flow' condition is also deemed important. In this work, a simple delta-function approximation for the nonlocal polarisability is fully constrained by a new version of a recently-discovered force theorem (sum rule), requiring the additional input of the independent-electron Kohn-Sham potential. This constrained polarisability cannot be used as input for the seamless vdW scheme, which requires a non-delta-function bare polarisability, and is instead applied to systems containing spherical fragments in a perturbative/asymptotic fashion for calculation of the widely-separated van der Waals interaction. The main thrust of this work is an investigation of the efficacy of the force theorem to constrain simple approximations for response quantities. Many recent perturbative vdW density functionals are based on response functions that are electron-hydrodynamical approximations to the response of the uniform electron gas. These schemes require their response functions to be 'cut off' at low density and high density-gradient, where the approximation overestimates the true response. The imposition of the cut-off is crucial to the success of such schemes. Here, we replace the cut-off with an exact theorem (the force theorem) which naturally 'ties down' the response, based on the potential- and density-functions of the system. This is the first time that the force theorem has been directly applied as a constraint upon a model response function (its original use, by Vignale and Kohn (7), was as an exact identity in time-dependent DFT). Also new in this work is the orbital-by-orbital Kohn-Sham version of the force theorem, and its proof (differing significantly from Vignale's original derivation (8) of the interacting theorem) by directly appealing to the Kohn-Sham orbitals makes its first appearance here. For quantum dots, our constrained response-approximation exactly recovers the net linear dipole response, due mainly to the force theorem's ideal applicability to harmonically confined systems. For angularly-averaged atoms, reasonable static dipole polarisabilities are obtained for the independent-electron Kohn-Sham (bare) case. The results are poor for the fully-interacting case, attributable to the local nature of the approximation. This lends weight to the assertion that it is better to approximate a bare quantity, then screen it, than it is to directly approximate a fully-interacting quantity. Dynamic net polarisabilities constrained by the force theorem are guaranteed to have the correct high-frequency asymptotic convergence to the free electron response. It is seen that the calculated dynamic polarisabilities for atoms are too small at intermediate frequencies, since the calculated vdW C6 coefficients (Hamaker constants) of atomic dimers are up to an order of magnitude too small, even without the use of a low-density cutoff. It is seen that our constrained local model response is non-analytic along the imaginary-frequency axis, and this is very detrimental to the C6 calculations, even though the integrated net polarisability is analytic. Improvement of the polarisability ansatz is indicated, perhaps to a non-deltafunction uniform-gas-based approximation. The use of pseudopotentials may improve the force theorem results, by softening the extreme nature of the bare Coulomb potential.
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Utilising airborne scanning laser (LiDAR) to improve the assessment of Australian native forest structureLee, Alex C., alexanderlee@aapt.net.au January 2008 (has links)
Enhanced understanding of forest stocks and dynamics can be gained through improved forest measurement, which is required to assist with sustainable forest management decisions, meet Australian and international reporting needs, and improve research efforts to better respond to a changing climate. Integrated sampling schemes that utilise a multi-scale approach, with a range of data sourced from both field and remote sensing, have been identified as a way to generate the required forest information. Given the multi-scale approach proposed by these schemes, it is important to understand how scale potentially affects the interpretation and reporting of forest from a range of data.
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To provide improved forest assessment at a range of scales, this research has developed a strategy for facilitating tree and stand level retrieval of structural attributes within an integrated multi-scale analysis framework. The research investigated the use of fine-scale (~1m) airborne Light Detection and Ranging (LiDAR) data (1,125 ha in central Queensland, and 60,000 ha in NE Victoria) to calibrate other remotely sensed data at the two study sites. The strategy refines forest structure mapping through three-dimensional (3D) modelling combined with empirical relationships, allowing improved estimation of maximum and predominant height, as well as foliage and crown cover at multiple scales. Tree stems (including those in the sub-canopy) were located using a height scaled crown openness index (HSCOI), which integrated the 3D density of canopy elements within the vertical profile into a two-dimensional spatial layer. The HSCOI modelling also facilitated the reconstruction of the 3D distribution of foliage and branches (of varying size and orientation) within the forest volume.
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Comparisons between forests at the Queensland and NE Victorian study sites indicated that accurate and consistent retrieval of cover and height metrics could be achieved at multiple scales, with the algorithms applicable for semi-automated use in other forests with similar structure. This information has facilitated interpretation and evaluation of Landsat imagery and ICESat satellite laser data for forest height and canopy cover retrieval. The development of a forest cover translation matrix allows a range of data and metrics to be compared at the plot scale, and has initiated the development of continuous transfer functions between the metrics and datasets. These data have been used subsequently to support interpretation of SAR data, by providing valuable input to 2D and 3D radar simulation models. Scale effects have been identified as being significant enough to influence national forest class reporting in more heterogeneous forests, thus allowing the most appropriate use and integration of remote sensed data at a range of scales. An empirically based forest minimum mapping area of 1 ha for reporting is suggested. The research has concluded that LiDAR can provide calibration information just as detailed and possibly more accurately than field measurements for many required forest attributes. Therefore the use of LiDAR data offers a unique opportunity to bridge the gap between accurate field plot structural information and stand to landscape scale sampling, to provide enhanced forest assessment in Australia.
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Structure-property relationships in solid state materials a computational approach emphasizing chemical bonding /Stoltzfus, Matthew W., January 2007 (has links)
Thesis (Ph. D.)--Ohio State University, 2007. / Title from first page of PDF file. Includes bibliographical references (p. 189-196).
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Essays on Distance Based (Non-Euclidean) Tests for Spatial Clustering in Inhomogeneous Populations : Adjusting for the Inhomogeneity through the Distance UsedRomild, Ulla January 2006 (has links)
<p>This thesis consits of four papers dealing with distance based (non-Euclidean) tests for spatial clustering in inhomogeneous populations. </p><p>The density adjusted distance (DAD), which considers the underlying density, is defined in the first paper. The proposed distance can be used together with any of the old distance based methods developed for traditional homogeneous spatial patterns. </p><p>The test statistics in distance based tests can all be seen as a weighted sum of distance measures for distances between <i>n</i> cases with known co-ordinates. DAD based test statistics are developed and their performance is compared with the performance of previously suggested tests by simulation in the second paper. The tests are compared in different types of data set and for various kinds of clustering. It is shown that no test is the optimal choice for all alternative hypotheses and that the tests are unequally sensitive to the structure of the underlying data. Tests based on the DAD are often a good alternative. </p><p>Test statistics and graphical tools for the Empirical Distribution Function of DAD are developed and examined in the third paper. We show that the result of an EDF test combined with EDF plots provides more information about the possible nature of clustering in a sample than the result of a parametric test only. </p>
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Evaluation of bioluminescence as a measure of bacterial cell density in porous mediaUesugi, Sandra L. 14 June 2000 (has links)
Graduation date: 2001
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Multivariate Analysis of Diverse Data for Improved Geostatistical Reservoir ModelingHong, Sahyun 11 1900 (has links)
Improved numerical reservoir models are constructed when all available diverse data sources are accounted for to the maximum extent possible. Integrating various diverse data is not a simple problem because data show different precision and relevance to the primary variables being modeled, nonlinear relations and different qualities. Previous approaches rely on a strong Gaussian assumption or the combination of the source-specific probabilities that are individually calibrated from each data source.
This dissertation develops different approaches to integrate diverse earth science data. First approach is based on combining probability. Each of diverse data is calibrated to generate individual conditional probabilities, and they are combined by a combination model. Some existing models are reviewed and a combination model is proposed with a new weighting scheme. Weakness of the probability combination schemes (PCS) is addressed. Alternative to the PCS, this dissertation develops a multivariate analysis technique. The method models the multivariate distributions without a parametric distribution assumption and without ad-hoc probability combination procedures. The method accounts for nonlinear features and different types of the data. Once the multivariate distribution is modeled, the marginal distribution constraints are evaluated. A sequential iteration algorithm is proposed for the evaluation. The algorithm compares the extracted marginal distributions from the modeled multivariate distribution with the known marginal distributions and corrects the multivariate distribution. Ultimately, the corrected distribution satisfies all axioms of probability distribution functions as well as the complex features among the given data.
The methodology is applied to several applications including: (1) integration of continuous data for a categorical attribute modeling, (2) integration of continuous and a discrete geologic map for categorical attribute modeling, (3) integration of continuous data for a continuous attribute modeling. Results are evaluated based on the defined criteria such as the fairness of the estimated probability or probability distribution and reasonable reproduction of input statistics. / Mining Engineering
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Examination of 4He droplets and droplets containing impurities at zero Kelvin using a density functional approachBrown, Ellen 01 August 2011 (has links)
Abstract
Detailed in this manuscript is a methodology to model ground state properties of 4He droplets at zero pressure and zero Kelvin using a density functional theory of liquid helium. The density functional approach examined here consists of two noted functionals from the literature and corresponding mean field definitions. A mean field and trial density are defined for each system and optimized to self-consistency using a matrix diagonalization technique. Initial calculations of planar slabs are performed and demonstrate reasonable agreement with experiment and with prior studies using density functional theory. Quantum properties of droplets and droplets containing atomic dopants are calculated. Three different He-dopant potentials are examined to test the limits of the functional methods. For each impurity interaction, an average of 12 atoms were found to reside in the first solvation shell with an atomic dopant placed at the droplet center. Maximum densities in the first solvation shell reached those of solid helium as predicted by DF methods.
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cDNA cloning and transcriptional regulation of the vitellogenin receptor from the imported fire ant, Solenopsis invicta Buren (Hymenoptera: Formicidae)Chen, Mei-Er 17 February 2005 (has links)
Receptors that transport vitellogenin into oocytes are of vital importance to egg-laying species because they promote oocyte development. In this study, we describe the cloning of the first hymenopteran vitellogenin receptor (VgR) cDNA. Using reverse transcription polymerase chain reaction (RT-PCR) and both 5- and 3- rapid amplification of cDNA ends (RACE), cDNA fragments encompassing the entire coding region of a putative VgR from fire ant (= SiVgR) were cloned and sequenced. The complete SiVgR cDNA has a length of 5764 bp encoding a 1782-residue protein with a predicted molecular mass of 201.3 kDa. The deduced amino acid sequence of the SiVgR revealed that it encoded a protein belonging to the low-density lipoprotein receptor superfamily. The number and arrangement of modular domains of SiVgR are the same as those of mosquito and fruit fly VgRs, except there are only four Class A cysteine-rich repeats in the first ligand binding domain of SiVgR compared to five in the mosquito and fruit fly. The deduced amino acid sequence of the SiVgR exhibited 35% and 31% identity to those of the mosquito and fruit fly VgRs, respectively. Northern blot analysis demonstrated that the 7.4-kb SiVgR mRNA was present only in Northern blot analysis demonstrated that the 7.4-kb SiVgR mRNA was present only in ovaries of reproductive females − both alates (virgins) and queens (mated) and was more abundant in alates. The developmental profile of transcriptional expression was determined by semiquantitative RT-PCR. It showed that the SiVgR transcript increased 6-fold from 0- to 10-days after mating, then remained constant through 30 days. It also showed that the SiVgR transcripts increased with age in alate virgin females. The transcriptional expression of the SiVgR was up-regulated more than two-fold by methoprene, a juvenile hormone analog, as determined by using an in vitro system. This suggested the SiVgR gene is JH regulated.
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Immunohistochemical fiber typing, ultrastructure, and morphometry of harbor seal skeletal muscleWatson, Rebecca Reiko 30 September 2004 (has links)
There is strong evidence that the skeletal muscles of pinnipeds are adapted for an aerobic, lipid-based metabolism under the hypoxic conditions associated with breath-hold diving. However, regional variations in mitochondrial density are unknown, and the few fiber typing studies performed on pinniped skeletal muscles are not consistent with an aerobic physiological profile. Thus, the objectives of this study were to (1) reexamine the fiber type distribution throughout the primary locomotory muscles of the harbor seal, and (2) to better understand the density and distribution of mitochondria in the locomotory muscles. Multiple samples from transverse sections of the epaxial muscles and a single sample of the pectoralis muscle of wild harbor seals were analyzed using immunohistochemical fiber typing and electron microscopy. Fiber typing results indicated that harbor seal epaxial muscles are composed of 47.4% type I (slow twitch, oxidative) fibers and 52.8%, IIa (fast twitch, oxidative) fibers. No fast twitch, glycolytic (type IIb) fibers were detected in the epaxial muscles or the pectoralis muscle. Mean volume density of mitochondria [Vv(mt,f)] was 5.6%, which is elevated over what would be predicted for a terrestrial mammal of similar mass. The elevated Vv(mt,f) had a high proportion of intermyofibrillar mitochondria, a trait not normally found in the muscles of terrestrial mammals with elevated Vv(mt,f). These results provide further evidence that the elevated mitochondrial volume density in pinniped muscle decreases the oxygen diffusion distance between myoglobin and mitochondria to facilitate aerobic respiration in working muscles. In addition, analyses of heterogeneity revealed that the regions of the epaxial muscles that were located deep within the muscle showed a significantly higher Vv(mt,f) relative to those regions that were superficially-located. In contrast, there was no significant heterogeneity of fiber type detected in either plane of the epaxial muscles. Thus, there was a fine-scale pattern of spatial heterogeneity of Vv(mt,f) within the epaxial muscles that does not manifest in fiber type distribution, indicating that the fibers have similar oxidative capacities.
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